Wall clock time and date at job start Wed Apr 1 2020 00:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00337 * 2 1 4 4 H 1.48503 * 109.46944 * 354.55018 * 3 2 1 5 5 H 1.48500 * 109.47209 * 234.54792 * 3 2 1 6 6 H 1.48497 * 109.46752 * 114.54917 * 3 2 1 7 7 C 1.38812 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00369 * 8.04905 * 7 2 1 9 9 N 1.36944 * 119.99736 * 188.04470 * 7 2 1 10 10 C 1.47418 * 125.65028 * 27.85484 * 9 7 2 11 11 C 1.54911 * 104.82970 * 155.83542 * 10 9 7 12 12 C 1.55149 * 101.58377 * 37.01316 * 11 10 9 13 13 C 1.47030 * 125.64551 * 207.55274 * 9 7 2 14 14 H 1.08998 * 109.88219 * 300.51268 * 13 9 7 15 15 C 1.52999 * 109.88100 * 61.68021 * 13 9 7 16 16 N 1.46502 * 109.46952 * 300.45585 * 15 13 9 17 17 C 1.34776 * 119.99827 * 174.01842 * 16 15 13 18 18 O 1.21598 * 120.00421 * 359.97438 * 17 16 15 19 19 C 1.47527 * 120.00293 * 179.97438 * 17 16 15 20 20 C 1.39802 * 120.06230 * 359.72507 * 19 17 16 21 21 C 1.37606 * 119.92449 * 179.76492 * 20 19 17 22 22 C 1.39217 * 120.07125 * 0.49007 * 21 20 19 23 23 N 1.39057 * 119.93141 * 179.76307 * 22 21 20 24 24 C 1.48233 * 110.99825 * 116.73548 * 23 22 21 25 25 C 1.51118 * 105.35983 * 144.89997 * 24 23 22 26 26 C 1.30967 * 109.45453 * 343.02264 * 25 24 23 27 27 C 1.48222 * 110.99836 * 230.37243 * 23 22 21 28 28 C 1.39209 * 120.13853 * 359.78426 * 22 21 20 29 29 C 1.37614 * 120.07300 * 359.95692 * 28 22 21 30 30 H 0.96990 * 120.00374 * 185.10604 * 1 2 3 31 31 H 1.08994 * 110.37491 * 274.67693 * 10 9 7 32 32 H 1.09004 * 110.36243 * 37.00215 * 10 9 7 33 33 H 1.09004 * 111.00123 * 155.08958 * 11 10 9 34 34 H 1.09005 * 111.00604 * 278.89927 * 11 10 9 35 35 H 1.09012 * 110.71921 * 82.85575 * 12 11 10 36 36 H 1.08995 * 110.72608 * 205.95244 * 12 11 10 37 37 H 1.09001 * 109.47785 * 60.45422 * 15 13 9 38 38 H 1.08998 * 109.46984 * 180.45770 * 15 13 9 39 39 H 0.97002 * 120.00141 * 354.01544 * 16 15 13 40 40 H 1.08003 * 120.03608 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.96633 * 180.27082 * 21 20 19 42 42 H 1.09006 * 110.26504 * 263.87315 * 24 23 22 43 43 H 1.08997 * 110.26397 * 25.92757 * 24 23 22 44 44 H 1.07995 * 125.27000 * 163.04101 * 25 24 23 45 45 H 1.08001 * 125.26424 * 180.02562 * 26 25 24 46 46 H 1.08996 * 110.27141 * 334.07192 * 27 23 22 47 47 H 1.08996 * 110.26904 * 96.03920 * 27 23 22 48 48 H 1.08006 * 119.97038 * 179.97438 * 28 22 21 49 49 H 1.07994 * 120.03860 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2908 2.7433 -0.1330 5 1 3.2011 1.6403 -1.1405 6 1 3.0015 1.7554 1.2735 7 6 2.0101 -1.2022 -0.0005 8 1 1.4782 -2.1328 -0.1319 9 7 3.3695 -1.2081 0.1654 10 6 4.1500 -0.1948 0.8983 11 6 5.4456 -0.9270 1.3285 12 6 5.7132 -1.8348 0.0991 13 6 4.2915 -2.2296 -0.3525 14 1 4.0291 -3.2062 0.0542 15 6 4.2246 -2.2640 -1.8807 16 7 2.8568 -2.5760 -2.3027 17 6 2.5304 -2.5411 -3.6098 18 8 3.3710 -2.2502 -4.4389 19 6 1.1532 -2.8557 -4.0349 20 6 0.1870 -3.1959 -3.0835 21 6 -1.0979 -3.4842 -3.4827 22 6 -1.4337 -3.4473 -4.8333 23 7 -2.7318 -3.7439 -5.2339 24 6 -3.3723 -2.5692 -5.8720 25 6 -4.2524 -3.1360 -6.9619 26 6 -3.8920 -4.3691 -7.2165 27 6 -2.7350 -4.7502 -6.3222 28 6 -0.4724 -3.1145 -5.7836 29 6 0.8131 -2.8200 -5.3904 30 1 -0.4850 -0.8366 0.0748 31 1 4.3879 0.6456 0.2463 32 1 3.5991 0.1477 1.7743 33 1 6.2623 -0.2207 1.4779 34 1 5.2781 -1.5229 2.2258 35 1 6.2306 -1.2806 -0.6842 36 1 6.2853 -2.7164 0.3878 37 1 4.5149 -1.2919 -2.2792 38 1 4.9042 -3.0286 -2.2569 39 1 2.1861 -2.8077 -1.6413 40 1 0.4480 -3.2291 -2.0360 41 1 -1.8460 -3.7428 -2.7478 42 1 -3.9751 -2.0261 -5.1441 43 1 -2.6151 -1.9130 -6.3010 44 1 -5.0540 -2.6061 -7.4547 45 1 -4.3505 -5.0135 -7.9519 46 1 -1.7984 -4.7081 -6.8781 47 1 -2.8857 -5.7489 -5.9126 48 1 -0.7357 -3.0871 -6.8307 49 1 1.5582 -2.5615 -6.1281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028134839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:01 Heat of formation + Delta-G solvation = 64.163534 kcal Electronic energy + Delta-G solvation = -29869.961059 eV Core-core repulsion = 25991.664148 eV Total energy + Delta-G solvation = -3878.296910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.68870 -39.43470 -38.11514 -37.25481 -34.01789 -32.98242 -32.80747 -30.95071 -29.90158 -29.80203 -28.62098 -28.41575 -25.06551 -24.02140 -23.36910 -22.26356 -21.56748 -20.97791 -19.77050 -19.60958 -19.41272 -18.03355 -17.43474 -16.85741 -16.07209 -15.67336 -15.47002 -15.03038 -14.72244 -14.52400 -14.45332 -13.89227 -13.71592 -13.47566 -13.42530 -13.29135 -13.12479 -12.87663 -12.72598 -12.49930 -12.31924 -12.04298 -11.85039 -11.71392 -11.51624 -11.37251 -11.16386 -11.10636 -10.96908 -10.69130 -10.48609 -9.97417 -9.85570 -9.45117 -9.43892 -9.14785 -8.88995 -8.77018 -8.66803 -8.51181 -8.26011 -7.04932 -6.39458 -3.44949 0.93109 1.50844 1.89668 3.16344 3.37991 3.50764 3.67111 3.70287 3.78079 4.10713 4.44868 4.54851 4.59180 4.89371 4.91515 4.99774 5.14247 5.18728 5.23764 5.27707 5.28561 5.29581 5.37894 5.41022 5.45933 5.52620 5.58966 5.62865 5.76042 5.81139 5.88775 6.07494 6.08173 6.08337 6.12817 6.22674 6.23630 6.25736 6.34327 6.38526 6.44266 6.54209 6.58730 6.60715 6.72910 6.78459 6.81126 7.09477 7.29102 7.66439 8.18077 8.23454 8.78182 8.89499 9.43665 10.17378 11.07241 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.003027 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.257262 B = 9246.974639 C =10252.687321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 1.062 2.938 4 H -0.301 1.301 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.324 4.324 8 H 0.068 0.932 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.044 0.956 15 C 0.116 3.884 16 N -0.692 5.692 17 C 0.551 3.449 18 O -0.562 6.562 19 C -0.125 4.125 20 C -0.065 4.065 21 C -0.095 4.095 22 C 0.092 3.908 23 N -0.469 5.469 24 C 0.054 3.946 25 C -0.165 4.165 26 C -0.171 4.171 27 C 0.052 3.948 28 C -0.165 4.165 29 C -0.054 4.054 30 H 0.263 0.737 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.409 0.591 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -8.609 -8.963 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.205 4.205 3 Si 0.894 3.106 4 H -0.228 1.228 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.452 4.452 8 H 0.085 0.915 9 N -0.330 5.330 10 C -0.018 4.018 11 C -0.170 4.170 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.062 0.938 15 C -0.010 4.010 16 N -0.344 5.344 17 C 0.338 3.662 18 O -0.443 6.443 19 C -0.128 4.128 20 C -0.084 4.084 21 C -0.114 4.114 22 C -0.003 4.003 23 N -0.190 5.190 24 C -0.072 4.072 25 C -0.183 4.183 26 C -0.189 4.189 27 C -0.074 4.074 28 C -0.185 4.185 29 C -0.073 4.073 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.141 0.859 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.473 -6.955 -9.059 11.516 hybrid contribution 0.228 -1.359 -0.381 1.430 sum -1.245 -8.315 -9.440 12.641 Atomic orbital electron populations 1.70915 1.05781 1.29600 1.49368 1.26075 0.96404 1.01130 0.96865 0.83912 0.73889 0.76207 0.76575 1.22833 1.21969 1.21194 1.19795 0.79738 0.94236 1.51423 0.91491 1.44822 1.02706 1.25732 1.59757 1.22193 0.91704 0.92533 0.95343 1.22733 0.98030 0.98636 0.97565 1.22517 0.96015 0.99542 0.98128 1.21320 0.90307 0.94158 0.90578 0.93827 1.21930 0.82421 1.00008 0.96663 1.46020 1.13496 1.67851 1.07055 1.18160 0.87313 0.77691 0.82989 1.90700 1.50906 1.50270 1.52440 1.20105 0.94287 1.04075 0.94317 1.21385 0.92469 0.95026 0.99540 1.20884 0.96160 0.99892 0.94472 1.19084 0.88734 0.98590 0.93845 1.63085 1.14868 1.07920 1.33133 1.22233 0.96941 0.92905 0.95116 1.23598 0.99632 0.96637 0.98424 1.23556 0.97957 0.97330 1.00094 1.22251 0.97268 0.97415 0.90494 1.21474 0.94101 1.03394 0.99494 1.21048 0.95844 0.95453 0.94987 0.92717 0.95801 0.92050 0.91686 0.91408 0.91297 0.91452 0.91822 0.93020 0.75017 0.84881 0.84725 0.88930 0.91603 0.84481 0.84554 0.91573 0.89267 0.85896 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 13.70 55.49 0.76 -26.04 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 1.06 26.19 24.66 -169.99 -4.19 22.00 16 4 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.29 -7.25 7.00 56.52 0.40 -6.85 16 6 H -0.28 -6.39 5.56 56.52 0.31 -6.08 16 7 C -0.32 -8.23 8.57 -15.06 -0.13 -8.35 16 8 H 0.07 1.73 6.71 -52.49 -0.35 1.38 16 9 N -0.60 -13.42 2.89 -162.58 -0.47 -13.89 16 10 C 0.11 2.19 4.51 -2.53 -0.01 2.18 16 11 C -0.13 -2.06 7.08 -24.59 -0.17 -2.24 16 12 C -0.12 -1.86 6.47 -24.91 -0.16 -2.02 16 13 C 0.14 2.65 3.38 -66.95 -0.23 2.43 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 15 C 0.12 2.20 5.21 -4.04 -0.02 2.18 16 16 N -0.69 -13.81 4.76 -61.35 -0.29 -14.10 16 17 C 0.55 11.31 7.76 -12.47 -0.10 11.21 16 18 O -0.56 -12.75 16.32 5.28 0.09 -12.66 16 19 C -0.12 -2.25 5.88 -104.94 -0.62 -2.87 16 20 C -0.06 -1.10 9.53 -39.23 -0.37 -1.47 16 21 C -0.10 -1.47 9.95 -39.45 -0.39 -1.86 16 22 C 0.09 1.31 4.89 -83.86 -0.41 0.90 16 23 N -0.47 -5.96 5.56 -171.17 -0.95 -6.91 16 24 C 0.05 0.61 6.49 -4.03 -0.03 0.58 16 25 C -0.16 -1.50 10.95 -35.81 -0.39 -1.89 16 26 C -0.17 -1.50 10.95 -35.81 -0.39 -1.89 16 27 C 0.05 0.54 6.42 -4.04 -0.03 0.51 16 28 C -0.16 -2.29 7.70 -39.45 -0.30 -2.59 16 29 C -0.05 -0.86 9.58 -39.23 -0.38 -1.24 16 30 H 0.26 7.51 8.73 -40.82 -0.36 7.15 16 31 H 0.02 0.52 5.47 -51.93 -0.28 0.24 16 32 H 0.06 1.33 6.44 -51.93 -0.33 0.99 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.00 7.84 -51.92 -0.41 0.60 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.41 8.16 3.81 -40.82 -0.16 8.00 16 40 H 0.13 2.29 6.39 -52.48 -0.34 1.95 16 41 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 0.77 6.94 -51.93 -0.36 0.41 16 44 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.07 0.67 6.06 -51.93 -0.31 0.36 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.12 1.44 6.98 -52.48 -0.37 1.07 16 49 H 0.13 2.08 7.64 -52.49 -0.40 1.68 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -31.26 380.65 -10.75 -42.01 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.21 Total: 10.45 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -4.22 Total: -6.60 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.95 Total: -60.94 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -4.19 Total: 22.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.26 -10.75 -42.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028134839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.173 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds