Wall clock time and date at job start Wed Apr 1 2020 00:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99760 * 2 1 4 4 H 1.48509 * 109.46727 * 264.99421 * 3 2 1 5 5 H 1.48491 * 109.47274 * 24.99246 * 3 2 1 6 6 H 1.48503 * 109.47109 * 144.99834 * 3 2 1 7 7 C 1.38810 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00408 * 186.13352 * 7 2 1 9 9 N 1.36939 * 120.00216 * 6.12571 * 7 2 1 10 10 C 1.47022 * 125.64531 * 5.45889 * 9 7 2 11 11 C 1.54322 * 107.27106 * 181.02050 * 10 9 7 12 12 C 1.55152 * 102.94305 * 22.19134 * 11 10 9 13 13 H 1.09004 * 111.03529 * 82.58792 * 12 11 10 14 14 C 1.52998 * 111.00631 * 206.42341 * 12 11 10 15 15 N 1.46499 * 109.47197 * 178.64744 * 14 12 11 16 16 C 1.34779 * 120.00144 * 179.97438 * 15 14 12 17 17 O 1.21603 * 119.99610 * 0.02562 * 16 15 14 18 18 C 1.47523 * 120.00197 * 180.02562 * 16 15 14 19 19 C 1.39793 * 120.06822 * 179.97438 * 18 16 15 20 20 C 1.37613 * 119.93034 * 179.97438 * 19 18 16 21 21 C 1.39217 * 120.06549 * 0.02562 * 20 19 18 22 22 N 1.39050 * 119.92757 * 180.02562 * 21 20 19 23 23 C 1.48222 * 111.00197 * 119.38220 * 22 21 20 24 24 C 1.51119 * 105.36160 * 144.89566 * 23 22 21 25 25 C 1.30960 * 109.45909 * 343.02958 * 24 23 22 26 26 C 1.48229 * 110.99857 * 233.02485 * 22 21 20 27 27 C 1.39216 * 120.13861 * 359.97438 * 21 20 19 28 28 C 1.37606 * 120.07285 * 0.02562 * 27 21 20 29 29 C 1.47419 * 125.65159 * 185.40929 * 9 7 2 30 30 H 0.96999 * 120.00487 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88498 * 300.43941 * 10 9 7 32 32 H 1.09001 * 109.88175 * 61.44958 * 10 9 7 33 33 H 1.09006 * 110.71945 * 263.83156 * 11 10 9 34 34 H 1.08999 * 110.72165 * 140.55721 * 11 10 9 35 35 H 1.09003 * 109.47249 * 58.65125 * 14 12 11 36 36 H 1.08994 * 109.47361 * 298.65249 * 14 12 11 37 37 H 0.96997 * 120.00124 * 0.02562 * 15 14 12 38 38 H 1.08008 * 120.03633 * 359.70937 * 19 18 16 39 39 H 1.08003 * 119.96182 * 179.97438 * 20 19 18 40 40 H 1.08995 * 110.27028 * 263.86778 * 23 22 21 41 41 H 1.09007 * 110.26848 * 25.92960 * 23 22 21 42 42 H 1.08005 * 125.27455 * 163.04601 * 24 23 22 43 43 H 1.07995 * 125.27798 * 180.02562 * 25 24 23 44 44 H 1.09007 * 110.26297 * 334.06696 * 26 22 21 45 45 H 1.08991 * 110.27001 * 96.03571 * 26 22 21 46 46 H 1.08006 * 119.96132 * 179.97438 * 27 21 20 47 47 H 1.07996 * 120.03524 * 180.02562 * 28 27 21 48 48 H 1.09002 * 110.36609 * 37.07859 * 29 9 7 49 49 H 1.08999 * 110.46533 * 274.80114 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6034 1.9853 -1.3948 5 1 1.3987 2.6809 0.5915 6 1 3.4909 1.4731 0.8031 7 6 2.0103 -1.2021 -0.0005 8 1 3.0857 -1.2049 0.0994 9 7 1.3315 -2.3846 -0.1276 10 6 -0.1098 -2.5221 -0.3833 11 6 -0.4263 -4.0320 -0.4216 12 6 0.7500 -4.6541 0.3761 13 1 0.5661 -4.6016 1.4492 14 6 1.0083 -6.0967 -0.0631 15 7 2.1436 -6.6397 0.6869 16 6 2.5548 -7.9040 0.4656 17 8 1.9836 -8.5939 -0.3569 18 6 3.6977 -8.4509 1.2212 19 6 4.1249 -9.7623 0.9932 20 6 5.1917 -10.2694 1.6993 21 6 5.8449 -9.4781 2.6402 22 7 6.9229 -9.9932 3.3516 23 6 8.1522 -9.2050 3.0979 24 6 8.9073 -9.2086 4.4070 25 6 8.0995 -9.5613 5.3756 26 6 6.7234 -9.8287 4.8112 27 6 5.4218 -8.1717 2.8695 28 6 4.3557 -7.6588 2.1667 29 6 1.9251 -3.7306 -0.0317 30 1 -0.4851 0.8400 0.0004 31 1 -0.6754 -2.0449 0.4169 32 1 -0.3619 -2.0637 -1.3396 33 1 -0.4328 -4.3987 -1.4481 34 1 -1.3773 -4.2392 0.0690 35 1 1.2341 -6.1171 -1.1292 36 1 0.1219 -6.7002 0.1321 37 1 2.5990 -6.0895 1.3432 38 1 3.6156 -10.3782 0.2667 39 1 5.5220 -11.2826 1.5238 40 1 8.7486 -9.6764 2.3168 41 1 7.8946 -8.1847 2.8136 42 1 9.9513 -8.9588 4.5255 43 1 8.3740 -9.6472 6.4165 44 1 6.0634 -8.9841 5.0091 45 1 6.3082 -10.7404 5.2406 46 1 5.9303 -7.5605 3.6004 47 1 4.0282 -6.6453 2.3447 48 1 2.7037 -3.7484 0.7309 49 1 2.3318 -4.0373 -0.9953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028799262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:17 Heat of formation + Delta-G solvation = 59.682168 kcal Electronic energy + Delta-G solvation = -28444.294094 eV Core-core repulsion = 24565.802857 eV Total energy + Delta-G solvation = -3878.491237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06810 -39.88164 -38.08541 -37.46656 -34.74757 -33.36855 -32.52654 -31.36742 -30.04978 -29.20215 -28.89141 -28.09104 -25.65604 -24.39779 -23.32834 -23.06994 -21.68948 -20.52622 -19.96281 -19.86835 -19.78481 -18.28228 -17.40565 -16.81275 -16.56608 -15.83906 -15.42853 -15.16622 -14.95950 -14.74137 -14.59424 -14.27029 -14.13669 -13.77213 -13.62094 -13.39183 -13.31267 -13.06431 -12.77434 -12.48203 -12.38685 -12.25008 -11.99949 -11.79086 -11.75467 -11.60202 -11.35864 -10.92563 -10.81445 -10.47129 -10.19972 -10.14112 -10.05780 -9.88794 -9.81302 -9.69106 -9.35230 -9.15000 -8.90178 -8.82785 -8.64081 -6.85210 -5.72428 -3.08834 0.45996 1.03962 1.67062 2.66385 3.16017 3.37759 3.37918 3.42788 3.44540 3.58661 4.17279 4.34787 4.45804 4.46862 4.52585 4.65012 4.87148 4.99006 4.99666 5.03257 5.08436 5.11400 5.20346 5.22901 5.24979 5.40465 5.45841 5.50275 5.63216 5.66956 5.81263 5.86838 5.86952 5.92369 5.99473 6.01230 6.04012 6.10066 6.31465 6.32610 6.34690 6.42444 6.46383 6.51527 6.65675 6.88128 6.89273 7.47856 7.49924 7.63125 7.80841 8.17871 8.24881 9.18796 9.79828 10.45979 11.37125 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.002192 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.470126 B =12771.139709 C =14676.148364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.718 5.718 16 C 0.555 3.445 17 O -0.541 6.541 18 C -0.132 4.132 19 C -0.053 4.053 20 C -0.101 4.101 21 C 0.098 3.902 22 N -0.472 5.472 23 C 0.054 3.946 24 C -0.167 4.167 25 C -0.168 4.168 26 C 0.052 3.948 27 C -0.158 4.158 28 C -0.073 4.073 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.034 0.966 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 -21.144 9.331 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.370 5.370 16 C 0.342 3.658 17 O -0.420 6.420 18 C -0.135 4.135 19 C -0.072 4.072 20 C -0.119 4.119 21 C 0.003 3.997 22 N -0.193 5.193 23 C -0.072 4.072 24 C -0.185 4.185 25 C -0.186 4.186 26 C -0.074 4.074 27 C -0.178 4.178 28 C -0.093 4.093 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.052 0.948 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.498 -21.943 8.570 26.667 hybrid contribution 0.632 2.141 0.610 2.314 sum 13.130 -19.802 9.181 25.471 Atomic orbital electron populations 1.69950 1.04919 1.25087 1.56746 1.24819 0.95689 0.97733 1.02217 0.86145 0.78541 0.83414 0.77690 1.21547 1.21680 1.20745 1.19026 0.90697 0.82630 1.43486 0.90564 1.44468 1.04491 0.99825 1.84319 1.21225 0.85180 0.88501 1.00447 1.22831 0.96398 0.99216 0.98772 1.22629 0.98715 0.91949 1.00531 0.90177 1.21437 0.87818 0.93733 0.96119 1.46010 1.34528 1.13573 1.42853 1.18173 0.83332 0.81775 0.82526 1.90779 1.57164 1.59020 1.35056 1.20079 0.98125 0.95790 0.99529 1.21255 0.94647 0.93887 0.97416 1.20957 0.95256 1.00299 0.95427 1.19178 0.93096 0.91785 0.95660 1.63116 1.01739 1.49709 1.04757 1.22236 0.90350 0.97061 0.97519 1.23586 0.99799 1.00668 0.94463 1.23574 0.94822 1.00597 0.99656 1.22262 0.96186 1.02197 0.86731 1.21560 0.98678 0.96010 1.01586 1.21220 0.94530 0.99379 0.94123 1.21577 0.93472 0.86180 0.97234 0.93721 0.92039 0.95133 0.92238 0.91866 0.91172 0.91468 0.76364 0.84105 0.84547 0.89023 0.91512 0.84339 0.84359 0.91452 0.89069 0.85487 0.85226 0.94767 0.96255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.42 55.49 0.58 -26.29 16 2 C -0.01 -0.23 5.46 -17.43 -0.10 -0.32 16 3 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.36 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.03 7.84 -52.48 -0.41 1.62 16 9 N -0.60 -15.22 3.39 -170.08 -0.58 -15.80 16 10 C 0.17 4.09 5.44 -3.07 -0.02 4.08 16 11 C -0.13 -2.40 6.42 -24.90 -0.16 -2.56 16 12 C -0.12 -1.94 3.10 -88.47 -0.27 -2.21 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.13 1.90 5.12 -4.04 -0.02 1.88 16 15 N -0.72 -9.33 5.36 -61.35 -0.33 -9.65 16 16 C 0.55 7.75 7.76 -12.47 -0.10 7.65 16 17 O -0.54 -9.30 16.34 5.27 0.09 -9.21 16 18 C -0.13 -1.52 5.88 -104.95 -0.62 -2.14 16 19 C -0.05 -0.56 9.58 -39.23 -0.38 -0.93 16 20 C -0.10 -0.93 9.95 -39.45 -0.39 -1.33 16 21 C 0.10 0.89 4.90 -83.86 -0.41 0.48 16 22 N -0.47 -3.98 5.56 -171.17 -0.95 -4.93 16 23 C 0.05 0.39 6.46 -4.04 -0.03 0.37 16 24 C -0.17 -1.02 10.95 -35.81 -0.39 -1.41 16 25 C -0.17 -1.02 10.95 -35.81 -0.39 -1.41 16 26 C 0.05 0.37 6.43 -4.03 -0.03 0.35 16 27 C -0.16 -1.40 7.65 -39.45 -0.30 -1.71 16 28 C -0.07 -0.71 9.53 -39.23 -0.37 -1.08 16 29 C 0.14 2.80 6.41 -2.53 -0.02 2.79 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.06 1.63 6.93 -51.93 -0.36 1.27 16 32 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.06 1.01 8.04 -51.93 -0.42 0.60 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.48 6.35 -40.82 -0.26 4.22 16 38 H 0.14 1.47 7.64 -52.48 -0.40 1.06 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.50 6.76 -51.93 -0.35 0.15 16 42 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.07 0.48 6.25 -51.92 -0.32 0.15 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.13 0.96 7.01 -52.48 -0.37 0.59 16 47 H 0.13 1.06 6.39 -52.49 -0.34 0.73 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -32.71 392.77 -11.86 -44.56 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.42 Total: 2.50 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -4.14 Total: -4.02 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -1.28 Total: -56.67 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.71 -11.86 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028799262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.247 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds