Wall clock time and date at job start Wed Apr 1 2020 00:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99823 * 2 1 4 4 H 1.48499 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47192 * 300.00173 * 3 2 1 6 6 H 1.48497 * 109.47057 * 59.99837 * 3 2 1 7 7 C 1.38810 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00398 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.47431 * 125.64964 * 359.95574 * 9 7 2 11 11 C 1.54913 * 104.83035 * 204.16998 * 10 9 7 12 12 C 1.55162 * 101.58174 * 322.98236 * 11 10 9 13 13 H 1.09000 * 110.87453 * 277.07533 * 12 11 10 14 14 C 1.52995 * 110.71931 * 153.86918 * 12 11 10 15 15 N 1.46496 * 109.47244 * 180.02562 * 14 12 11 16 16 C 1.34777 * 119.99900 * 179.97438 * 15 14 12 17 17 O 1.21587 * 120.00411 * 0.02562 * 16 15 14 18 18 C 1.47526 * 119.99762 * 179.97438 * 16 15 14 19 19 C 1.39792 * 120.06994 * 180.02562 * 18 16 15 20 20 C 1.37601 * 119.93575 * 180.02562 * 19 18 16 21 21 C 1.39225 * 120.06433 * 0.02562 * 20 19 18 22 22 N 1.39045 * 119.92773 * 179.97438 * 21 20 19 23 23 C 1.48229 * 111.00173 * 120.02936 * 22 21 20 24 24 C 1.51123 * 105.36036 * 144.89530 * 23 22 21 25 25 C 1.30956 * 109.45660 * 343.02385 * 24 23 22 26 26 C 1.48230 * 110.99740 * 233.66302 * 22 21 20 27 27 C 1.39218 * 120.13939 * 0.25426 * 21 20 19 28 28 C 1.37609 * 120.06594 * 359.44382 * 27 21 20 29 29 C 1.47025 * 125.65007 * 179.97438 * 9 7 2 30 30 H 0.97000 * 120.00767 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36149 * 322.99827 * 10 9 7 32 32 H 1.08993 * 110.36695 * 85.32465 * 10 9 7 33 33 H 1.09001 * 110.99798 * 204.91436 * 11 10 9 34 34 H 1.08993 * 111.00923 * 81.06435 * 11 10 9 35 35 H 1.08997 * 109.47086 * 60.02703 * 14 12 11 36 36 H 1.09005 * 109.47117 * 300.02636 * 14 12 11 37 37 H 0.96997 * 119.99816 * 359.97438 * 15 14 12 38 38 H 1.08003 * 120.03306 * 0.02562 * 19 18 16 39 39 H 1.08003 * 119.97270 * 180.02562 * 20 19 18 40 40 H 1.09003 * 110.26521 * 263.86855 * 23 22 21 41 41 H 1.08999 * 110.26730 * 25.92717 * 23 22 21 42 42 H 1.08000 * 125.26460 * 163.04507 * 24 23 22 43 43 H 1.08008 * 125.26868 * 180.02562 * 25 24 23 44 44 H 1.08997 * 110.26801 * 334.07447 * 26 22 21 45 45 H 1.09007 * 110.26688 * 96.03892 * 26 22 21 46 46 H 1.08003 * 119.96442 * 179.73137 * 27 21 20 47 47 H 1.07998 * 120.03280 * 180.27432 * 28 27 21 48 48 H 1.09004 * 109.88338 * 59.48782 * 29 9 7 49 49 H 1.08990 * 110.01243 * 298.39340 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4013 -3.9320 0.6139 12 6 0.7786 -4.7525 0.0290 13 1 0.5479 -5.1011 -0.9776 14 6 1.1236 -5.9307 0.9420 15 7 2.2392 -6.6850 0.3653 16 6 2.7176 -7.7726 1.0015 17 8 2.2230 -8.1280 2.0538 18 6 3.8407 -8.5325 0.4205 19 6 4.3377 -9.6611 1.0788 20 6 5.3857 -10.3675 0.5346 21 6 5.9513 -9.9589 -0.6701 22 7 7.0105 -10.6746 -1.2172 23 6 6.6609 -11.1986 -2.5589 24 6 7.9406 -11.1333 -3.3602 25 6 8.7888 -10.3341 -2.7630 26 6 8.1614 -9.7850 -1.5027 27 6 5.4624 -8.8320 -1.3253 28 6 4.4105 -8.1250 -0.7893 29 6 1.9319 -3.7274 0.0005 30 1 -0.4851 0.8400 0.0004 31 1 -0.5991 -1.7585 0.6162 32 1 -0.5275 -2.4875 -1.0174 33 1 -1.3588 -4.3326 0.2809 34 1 -0.3515 -3.8971 1.7022 35 1 0.2553 -6.5826 1.0377 36 1 1.4076 -5.5570 1.9258 37 1 2.6335 -6.4017 -0.4744 38 1 3.8996 -9.9783 2.0136 39 1 5.7699 -11.2398 1.0425 40 1 6.3150 -12.2295 -2.4832 41 1 5.8946 -10.5753 -3.0198 42 1 8.1264 -11.6634 -4.2826 43 1 9.7828 -10.1029 -3.1167 44 1 7.8176 -8.7636 -1.6661 45 1 8.8754 -9.8154 -0.6796 46 1 5.9062 -8.5151 -2.2576 47 1 4.0288 -7.2535 -1.3002 48 1 2.5589 -3.8506 0.8837 49 1 2.5294 -3.8664 -0.9004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028799263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:20 Heat of formation + Delta-G solvation = 61.330449 kcal Electronic energy + Delta-G solvation = -28431.576935 eV Core-core repulsion = 24553.157173 eV Total energy + Delta-G solvation = -3878.419762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07561 -39.88803 -38.09689 -37.46759 -34.75032 -33.37734 -32.53777 -31.37197 -30.04620 -29.20633 -28.90058 -28.06204 -25.66342 -24.40775 -23.31990 -23.07645 -21.69587 -20.58561 -19.94934 -19.87799 -19.71087 -18.27538 -17.40558 -16.84716 -16.57461 -15.84532 -15.47235 -15.15742 -14.97607 -14.80967 -14.58454 -14.25695 -14.18662 -13.73880 -13.62786 -13.41148 -13.31671 -12.89598 -12.78351 -12.54259 -12.47748 -12.20037 -11.81461 -11.79096 -11.71123 -11.58509 -11.50376 -10.97445 -10.83875 -10.48241 -10.18381 -10.14128 -10.03740 -9.96491 -9.78778 -9.53584 -9.35896 -9.15039 -8.90369 -8.83755 -8.67817 -6.86065 -5.67961 -3.09736 0.45548 1.03285 1.65936 2.66352 3.16104 3.36971 3.37816 3.43288 3.45824 3.58451 4.16302 4.33751 4.44887 4.46094 4.51802 4.64633 4.86236 4.97971 4.98934 5.02223 5.08855 5.10842 5.20447 5.23364 5.24742 5.37935 5.45041 5.50119 5.63158 5.67069 5.80531 5.85732 5.86137 5.91656 5.99348 6.02423 6.06232 6.12136 6.31565 6.31733 6.34444 6.42526 6.51673 6.56572 6.69191 6.87577 6.88595 7.48837 7.49911 7.60645 7.83342 8.18202 8.34037 9.19652 9.80586 10.45252 11.36082 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.002094 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.158163 B =13367.832196 C =14837.265713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.555 3.445 17 O -0.541 6.541 18 C -0.132 4.132 19 C -0.053 4.053 20 C -0.100 4.100 21 C 0.097 3.903 22 N -0.472 5.472 23 C 0.054 3.946 24 C -0.169 4.169 25 C -0.166 4.166 26 C 0.051 3.949 27 C -0.158 4.158 28 C -0.073 4.073 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.400 0.600 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.024 0.976 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -23.541 -5.544 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.370 5.370 16 C 0.342 3.658 17 O -0.419 6.419 18 C -0.135 4.135 19 C -0.072 4.072 20 C -0.119 4.119 21 C 0.003 3.997 22 N -0.193 5.193 23 C -0.071 4.071 24 C -0.187 4.187 25 C -0.185 4.185 26 C -0.074 4.074 27 C -0.178 4.178 28 C -0.093 4.093 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.235 0.765 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.042 0.958 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 12.268 -23.969 -4.388 27.282 hybrid contribution 0.546 1.675 -1.216 2.140 sum 12.814 -22.295 -5.604 26.318 Atomic orbital electron populations 1.69800 1.04892 1.24693 1.57670 1.24795 0.95745 0.97757 1.02440 0.85998 0.78638 0.83591 0.77273 1.20547 1.21748 1.21695 1.19117 0.90512 0.82473 1.42983 0.90499 1.44510 1.02003 0.99700 1.86817 1.21943 0.84651 0.92547 0.98201 1.23009 0.95502 0.98542 1.00362 1.22457 0.98394 0.93998 0.98613 0.90580 1.21495 0.88093 0.92174 0.97343 1.46016 1.36198 1.28402 1.26397 1.18170 0.82766 0.80503 0.84397 1.90778 1.60077 1.68543 1.22508 1.20087 0.98545 0.98182 0.96669 1.21255 0.94144 0.92490 0.99310 1.20960 0.95928 1.00498 0.94516 1.19178 0.92907 0.92690 0.94969 1.63118 1.04463 1.30381 1.21348 1.22230 0.96366 1.01909 0.86609 1.23576 0.95172 0.99852 1.00095 1.23584 0.99847 0.98511 0.96532 1.22270 0.92713 0.95459 0.96985 1.21554 0.98336 0.96898 1.01052 1.21211 0.94977 0.98807 0.94294 1.21323 0.93483 0.86045 0.97667 0.93748 0.87487 0.96982 0.92069 0.91766 0.91441 0.91027 0.76450 0.84090 0.84533 0.89069 0.91602 0.84357 0.84337 0.91396 0.89007 0.85508 0.85273 0.95772 0.96537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.32 3.39 -170.07 -0.58 -15.90 16 10 C 0.15 3.62 5.89 -2.52 -0.01 3.61 16 11 C -0.13 -2.47 6.53 -24.58 -0.16 -2.64 16 12 C -0.12 -1.89 3.02 -88.78 -0.27 -2.16 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.95 4.99 -4.05 -0.02 1.93 16 15 N -0.72 -9.43 5.35 -61.36 -0.33 -9.76 16 16 C 0.55 7.84 7.76 -12.47 -0.10 7.75 16 17 O -0.54 -9.43 16.34 5.29 0.09 -9.34 16 18 C -0.13 -1.52 5.88 -104.95 -0.62 -2.14 16 19 C -0.05 -0.56 9.58 -39.23 -0.38 -0.94 16 20 C -0.10 -0.93 9.95 -39.45 -0.39 -1.33 16 21 C 0.10 0.89 4.90 -83.86 -0.41 0.48 16 22 N -0.47 -3.95 5.56 -171.16 -0.95 -4.90 16 23 C 0.05 0.38 6.46 -4.03 -0.03 0.36 16 24 C -0.17 -1.00 10.95 -35.81 -0.39 -1.39 16 25 C -0.17 -1.00 10.94 -35.81 -0.39 -1.39 16 26 C 0.05 0.37 6.43 -4.04 -0.03 0.35 16 27 C -0.16 -1.39 7.65 -39.45 -0.30 -1.69 16 28 C -0.07 -0.70 9.53 -39.23 -0.37 -1.08 16 29 C 0.14 2.83 6.53 -3.06 -0.02 2.81 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 37 H 0.40 4.44 6.34 -40.82 -0.26 4.18 16 38 H 0.14 1.49 7.64 -52.48 -0.40 1.08 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.46 6.74 -51.93 -0.35 0.11 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.07 0.50 6.27 -51.93 -0.33 0.17 16 45 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 46 H 0.13 0.94 7.01 -52.48 -0.37 0.57 16 47 H 0.13 1.04 6.39 -52.49 -0.34 0.70 16 48 H 0.02 0.50 7.77 -51.93 -0.40 0.10 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -32.63 391.79 -11.83 -44.46 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.36 Total: 3.01 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -4.14 Total: -4.25 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -1.30 Total: -56.77 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.63 -11.83 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028799263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.792 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds