Wall clock time and date at job start Wed Apr 1 2020 00:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47051 * 300.00003 * 3 2 1 6 6 H 1.48506 * 109.47096 * 60.00064 * 3 2 1 7 7 C 1.38815 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99514 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64943 * 359.97369 * 9 7 2 11 11 C 1.54910 * 104.83342 * 155.90266 * 10 9 7 12 12 C 1.55159 * 101.57966 * 37.01160 * 11 10 9 13 13 H 1.09001 * 110.72363 * 83.03453 * 12 11 10 14 14 C 1.53001 * 110.71900 * 206.13279 * 12 11 10 15 15 N 1.46494 * 109.47268 * 182.55635 * 14 12 11 16 16 C 1.34772 * 120.00362 * 179.97438 * 15 14 12 17 17 O 1.21551 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.47863 * 120.00285 * 180.02562 * 16 15 14 19 19 C 1.39613 * 120.10653 * 359.97438 * 18 16 15 20 20 C 1.37984 * 120.00230 * 180.02562 * 19 18 16 21 21 C 1.38251 * 120.22702 * 359.75885 * 20 19 18 22 22 C 1.38979 * 120.21784 * 0.52218 * 21 20 19 23 23 N 1.39714 * 120.00400 * 179.73754 * 22 21 20 24 24 C 1.48226 * 110.99932 * 122.94755 * 23 22 21 25 25 C 1.51113 * 105.44053 * 92.60000 * 24 23 22 26 26 C 1.30960 * 109.45740 * 16.92477 * 25 24 23 27 27 C 1.48358 * 110.97697 * 236.49996 * 23 22 21 28 28 C 1.38678 * 119.99302 * 359.45606 * 22 21 20 29 29 C 1.47319 * 125.61485 * 180.19048 * 9 7 2 30 30 H 0.96990 * 120.00194 * 359.97438 * 1 2 3 31 31 H 1.09008 * 110.36628 * 37.06511 * 10 9 7 32 32 H 1.09001 * 110.46199 * 274.79140 * 10 9 7 33 33 H 1.08996 * 111.00734 * 278.93638 * 11 10 9 34 34 H 1.08999 * 111.03144 * 155.09815 * 11 10 9 35 35 H 1.08998 * 109.47174 * 62.55575 * 14 12 11 36 36 H 1.09002 * 109.46931 * 302.56016 * 14 12 11 37 37 H 0.97007 * 119.99813 * 0.02562 * 15 14 12 38 38 H 1.07994 * 120.00231 * 0.02562 * 19 18 16 39 39 H 1.07997 * 119.88555 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.88715 * 180.25606 * 21 20 19 41 41 H 1.08998 * 110.26744 * 333.57349 * 24 23 22 42 42 H 1.09009 * 110.26377 * 211.61416 * 24 23 22 43 43 H 1.08003 * 125.27215 * 196.93121 * 25 24 23 44 44 H 1.08004 * 125.27489 * 180.02562 * 26 25 24 45 45 H 1.09001 * 110.19043 * 148.42965 * 27 23 22 46 46 H 1.08998 * 110.38046 * 26.43607 * 27 23 22 47 47 H 1.08006 * 120.11467 * 180.30191 * 28 22 21 48 48 H 1.09001 * 110.06249 * 61.68820 * 29 9 7 49 49 H 1.08999 * 109.85477 * 300.42499 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4014 -3.9326 -0.6109 12 6 0.7786 -4.7525 -0.0254 13 1 0.5449 -5.1003 0.9808 14 6 1.1234 -5.9317 -0.9372 15 7 2.1979 -6.7208 -0.3298 16 6 2.6682 -7.8159 -0.9590 17 8 2.2011 -8.1487 -2.0307 18 6 3.7523 -8.6127 -0.3457 19 6 4.2908 -8.2322 0.8850 20 6 5.3028 -8.9770 1.4551 21 6 5.7837 -10.1037 0.8142 22 6 5.2584 -10.4876 -0.4138 23 7 5.7515 -11.6239 -1.0602 24 6 4.6647 -12.5952 -1.3299 25 6 4.1715 -12.2710 -2.7210 26 6 5.0607 -11.5340 -3.3384 27 6 6.2376 -11.2915 -2.4219 28 6 4.2408 -9.7460 -0.9949 29 6 1.9339 -3.7298 0.0051 30 1 -0.4850 0.8399 0.0004 31 1 -0.5992 -1.7591 -0.6154 32 1 -0.5290 -2.4859 1.0182 33 1 -0.3518 -3.8989 -1.6992 34 1 -1.3588 -4.3333 -0.2777 35 1 1.4512 -5.5574 -1.9070 36 1 0.2418 -6.5590 -1.0690 37 1 2.5704 -6.4554 0.5257 38 1 3.9154 -7.3550 1.3907 39 1 5.7178 -8.6812 2.4073 40 1 6.5731 -10.6850 1.2675 41 1 3.8597 -12.4718 -0.6055 42 1 5.0513 -13.6138 -1.2941 43 1 3.2313 -12.5967 -3.1410 44 1 4.9673 -11.1573 -4.3463 45 1 7.0684 -11.9424 -2.6940 46 1 6.5452 -10.2470 -2.4706 47 1 3.8278 -10.0454 -1.9469 48 1 2.5277 -3.8681 0.9087 49 1 2.5625 -3.8543 -0.8767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028837415.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:01 Heat of formation + Delta-G solvation = 61.305805 kcal Electronic energy + Delta-G solvation = -28824.781720 eV Core-core repulsion = 24946.360889 eV Total energy + Delta-G solvation = -3878.420831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19440 -39.80841 -38.03720 -37.47443 -34.74044 -33.00267 -32.41139 -31.35752 -29.88989 -29.12423 -28.81897 -28.16455 -25.71978 -24.29600 -23.81045 -22.87034 -21.62332 -20.56636 -19.91267 -19.68304 -19.62967 -18.17471 -16.89287 -16.76646 -16.33894 -16.15139 -15.78101 -15.38405 -14.88035 -14.79760 -14.61891 -14.40967 -14.29663 -13.77979 -13.56571 -13.17173 -12.98066 -12.71130 -12.60484 -12.53530 -12.35413 -12.18590 -11.81934 -11.72337 -11.71336 -11.66209 -11.51133 -10.96610 -10.83489 -10.47634 -10.17493 -10.04822 -9.99765 -9.80473 -9.55385 -9.44599 -9.29412 -9.24879 -9.09255 -8.92963 -8.67281 -6.85673 -5.67421 -3.09095 0.61607 0.94478 1.75163 2.72400 3.14127 3.38299 3.41745 3.43779 3.46308 3.59816 4.39731 4.42823 4.46070 4.51677 4.58604 4.79138 4.86733 4.94821 5.07738 5.08036 5.17224 5.23111 5.23757 5.27853 5.35939 5.38106 5.48442 5.50567 5.58376 5.67198 5.85697 5.94700 5.98162 6.01300 6.01743 6.04778 6.07033 6.12047 6.31990 6.36413 6.38532 6.43919 6.52237 6.56374 6.69551 6.87825 6.94307 7.48974 7.49872 7.60816 7.83668 8.17780 8.34339 9.20207 9.80876 10.45697 11.36677 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.002053 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.000665 B =13636.237218 C =14110.812269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.718 5.718 16 C 0.554 3.446 17 O -0.541 6.541 18 C -0.124 4.124 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.070 4.070 22 C 0.060 3.940 23 N -0.468 5.468 24 C 0.057 3.943 25 C -0.189 4.189 26 C -0.187 4.187 27 C 0.056 3.944 28 C -0.089 4.089 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.141 0.859 48 H 0.018 0.982 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -25.429 0.126 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.369 5.369 16 C 0.341 3.659 17 O -0.420 6.420 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.089 4.089 22 C -0.034 4.034 23 N -0.187 5.187 24 C -0.069 4.069 25 C -0.208 4.208 26 C -0.206 4.206 27 C -0.070 4.070 28 C -0.110 4.110 29 C 0.014 3.986 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.117 0.883 46 H 0.099 0.901 47 H 0.158 0.842 48 H 0.036 0.964 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.551 -25.636 -0.264 27.358 hybrid contribution -0.071 1.374 -0.051 1.377 sum 9.480 -24.261 -0.315 26.050 Atomic orbital electron populations 1.69800 1.04893 1.24683 1.57720 1.24796 0.95747 0.97752 1.02473 0.85997 0.78644 0.83589 0.77264 1.20539 1.21708 1.21751 1.19125 0.90525 0.82476 1.42916 0.90486 1.44582 1.01958 0.99689 1.86846 1.21930 0.84647 0.92507 0.98218 1.23005 0.95479 0.98580 1.00342 1.22455 0.98385 0.93986 0.98613 0.90567 1.21499 0.89055 0.91592 0.96953 1.46010 1.38964 1.27238 1.24729 1.18268 0.82270 0.80623 0.84729 1.90759 1.59769 1.69949 1.21518 1.19936 0.98916 0.97584 0.96357 1.21424 0.95791 0.99209 0.94110 1.21078 0.97148 0.95187 1.00556 1.21169 0.98709 0.95821 0.93193 1.18967 0.95918 0.93115 0.95377 1.63193 1.29212 1.09259 1.17073 1.22258 0.92886 0.97314 0.94489 1.24043 0.99857 0.99447 0.97458 1.24057 0.95970 0.99713 1.00865 1.22291 0.97173 1.02331 0.85218 1.22077 0.95151 0.93446 1.00313 1.21390 0.93451 0.85996 0.97719 0.93759 0.87502 0.96996 0.91811 0.92085 0.91067 0.91493 0.76389 0.85272 0.84814 0.84875 0.90230 0.88307 0.84487 0.84452 0.88275 0.90123 0.84156 0.96385 0.95706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.36 3.40 -169.83 -0.58 -15.94 16 10 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 11 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 12 C -0.12 -1.89 2.98 -88.78 -0.26 -2.16 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.97 5.00 -4.04 -0.02 1.95 16 15 N -0.72 -9.53 5.38 -61.25 -0.33 -9.86 16 16 C 0.55 8.05 7.77 -12.32 -0.10 7.95 16 17 O -0.54 -9.65 16.34 5.32 0.09 -9.57 16 18 C -0.12 -1.50 5.87 -104.99 -0.62 -2.11 16 19 C -0.09 -0.83 9.54 -39.16 -0.37 -1.20 16 20 C -0.12 -0.99 10.02 -39.67 -0.40 -1.39 16 21 C -0.07 -0.60 9.96 -39.30 -0.39 -1.00 16 22 C 0.06 0.60 4.53 -83.83 -0.38 0.22 16 23 N -0.47 -4.17 5.61 -171.09 -0.96 -5.13 16 24 C 0.06 0.45 6.39 -4.04 -0.03 0.42 16 25 C -0.19 -1.50 9.57 -35.81 -0.34 -1.84 16 26 C -0.19 -1.51 9.57 -35.81 -0.34 -1.85 16 27 C 0.06 0.45 6.39 -3.96 -0.03 0.43 16 28 C -0.09 -1.04 8.08 -38.97 -0.31 -1.36 16 29 C 0.14 2.83 6.66 -2.90 -0.02 2.81 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.11 2.90 5.88 -51.92 -0.31 2.59 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 4.47 6.43 -40.82 -0.26 4.20 16 38 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.08 0.65 7.74 -51.93 -0.40 0.25 16 42 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 47 H 0.14 1.78 4.95 -52.48 -0.26 1.52 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -32.77 390.50 -11.79 -44.56 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.40 Total: 4.23 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.04 Total: -4.93 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -1.31 Total: -57.20 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.77 -11.79 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028837415.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.870 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds