Wall clock time and date at job start Wed Apr 1 2020 00:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48504 * 109.47129 * 239.99999 * 3 2 1 5 5 H 1.48496 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47115 * 120.00162 * 3 2 1 7 7 C 1.38816 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00019 * 158.63103 * 7 2 1 9 9 N 1.36931 * 120.00192 * 338.62730 * 7 2 1 10 10 C 1.43427 * 120.54303 * 156.25451 * 9 7 2 11 11 C 1.54894 * 116.08227 * 271.59505 * 10 9 7 12 12 C 1.54839 * 110.14431 * 318.63504 * 11 10 9 13 13 C 1.50311 * 110.68971 * 321.13359 * 12 11 10 14 14 C 1.52529 * 105.32956 * 97.83533 * 13 12 11 15 15 H 1.09004 * 108.52098 * 31.56875 * 14 13 12 16 16 N 1.46498 * 108.52055 * 149.24095 * 14 13 12 17 17 C 1.34783 * 119.99929 * 207.28628 * 16 14 13 18 18 O 1.21278 * 120.00115 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99966 * 180.02562 * 17 16 14 20 20 N 1.46493 * 109.47082 * 180.02562 * 19 17 16 21 21 C 1.36834 * 125.06535 * 265.06680 * 20 19 17 22 22 C 1.34236 * 109.93230 * 180.31711 * 21 20 19 23 23 C 1.46489 * 106.99469 * 359.77432 * 22 21 20 24 24 C 1.39634 * 134.02603 * 179.97438 * 23 22 21 25 25 C 1.36630 * 119.75894 * 180.02562 * 24 23 22 26 26 C 1.38833 * 120.53208 * 359.97438 * 25 24 23 27 27 C 1.37753 * 120.66216 * 0.02562 * 26 25 24 28 28 C 1.37691 * 125.06435 * 85.00019 * 20 19 17 29 29 C 1.46235 * 114.15884 * 270.40373 * 14 13 12 30 30 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 31 31 H 1.09004 * 108.15453 * 33.31403 * 10 9 7 32 32 H 1.09006 * 108.16188 * 150.08164 * 10 9 7 33 33 H 1.09002 * 109.35990 * 78.84176 * 11 10 9 34 34 H 1.09007 * 109.36163 * 198.56547 * 11 10 9 35 35 H 1.09003 * 109.20674 * 81.47177 * 12 11 10 36 36 H 1.08989 * 109.21416 * 200.83331 * 12 11 10 37 37 H 1.08996 * 110.38726 * 338.84298 * 13 12 11 38 38 H 1.08998 * 110.19564 * 216.72897 * 13 12 11 39 39 H 0.97006 * 120.00127 * 27.28904 * 16 14 13 40 40 H 1.09001 * 109.47416 * 59.99434 * 19 17 16 41 41 H 1.09008 * 109.46826 * 300.00079 * 19 17 16 42 42 H 1.08001 * 125.02808 * 0.09029 * 21 20 19 43 43 H 1.07996 * 126.50390 * 179.79748 * 22 21 20 44 44 H 1.07994 * 120.12563 * 0.04584 * 24 23 22 45 45 H 1.08004 * 119.73441 * 179.97438 * 25 24 23 46 46 H 1.07992 * 119.66948 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.10551 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.84487 * 177.99363 * 29 14 13 49 49 H 1.08993 * 109.84991 * 298.97578 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0346 -1.2341 -0.3414 9 7 1.3963 -2.3475 0.4311 10 6 1.8580 -3.6322 -0.0087 11 6 1.2348 -4.1669 -1.3220 12 6 -0.2849 -3.8713 -1.3501 13 6 -0.8890 -4.0659 0.0124 14 6 -0.9651 -2.6701 0.6229 15 1 -1.1219 -1.9493 -0.1797 16 7 -2.1187 -2.6188 1.5244 17 6 -2.7401 -1.4457 1.7575 18 8 -2.3446 -0.4327 1.2205 19 6 -3.9264 -1.3927 2.6853 20 7 -4.4188 -0.0156 2.7703 21 6 -4.0694 0.8858 3.7386 22 6 -4.7023 2.0509 3.5290 23 6 -5.5200 1.8835 2.3251 24 6 -6.3857 2.7187 1.6161 25 6 -7.0166 2.2498 0.4985 26 6 -6.8035 0.9494 0.0615 27 6 -5.9536 0.1087 0.7460 28 6 -5.3012 0.5649 1.8869 29 6 0.2281 -2.2788 1.3723 30 1 -0.4851 0.8400 -0.0004 31 1 2.9383 -3.5770 -0.1431 32 1 1.6527 -4.3555 0.7806 33 1 1.7131 -3.6816 -2.1728 34 1 1.3926 -5.2437 -1.3847 35 1 -0.4440 -2.8416 -1.6704 36 1 -0.7684 -4.5455 -2.0569 37 1 -0.2540 -4.7096 0.6210 38 1 -1.8876 -4.4937 -0.0763 39 1 -2.4352 -3.4290 1.9537 40 1 -3.6280 -1.7342 3.6766 41 1 -4.7169 -2.0379 2.3016 42 1 -3.3884 0.6879 4.5531 43 1 -4.6234 2.9427 4.1330 44 1 -6.5558 3.7316 1.9496 45 1 -7.6864 2.8960 -0.0493 46 1 -7.3097 0.5931 -0.8234 47 1 -5.7947 -0.9014 0.3982 48 1 0.1132 -1.2613 1.7460 49 1 0.3832 -2.9644 2.2054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034532489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:27 Heat of formation + Delta-G solvation = 71.693820 kcal Electronic energy + Delta-G solvation = -30784.867453 eV Core-core repulsion = 26906.897080 eV Total energy + Delta-G solvation = -3877.970373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18420 -39.29514 -37.55756 -36.65382 -34.05252 -33.13539 -32.72995 -30.80960 -30.46332 -29.60711 -28.68174 -26.70668 -25.94394 -24.19986 -22.93932 -22.45059 -21.42356 -20.67140 -19.89593 -19.72227 -18.78413 -17.12123 -16.85220 -16.54363 -16.28812 -15.36443 -15.20742 -14.95121 -14.59656 -14.25280 -14.18661 -13.74130 -13.72068 -13.54849 -13.20259 -13.06993 -12.83217 -12.51740 -12.41095 -12.24960 -11.91521 -11.83208 -11.46774 -11.35501 -11.30431 -11.23740 -10.71602 -10.67898 -10.64910 -10.23037 -10.14633 -9.83404 -9.75971 -9.55792 -9.53192 -9.41988 -9.00392 -8.47803 -8.15421 -7.94790 -7.44918 -6.62582 -5.60002 -3.03946 1.33137 1.83113 2.75834 3.01426 3.24105 3.47664 3.55241 3.57508 3.81507 4.14364 4.63404 4.80040 4.84113 4.97647 5.06294 5.13206 5.18082 5.29202 5.45387 5.55346 5.56400 5.60700 5.64802 5.65405 5.82713 5.84005 5.95928 6.09796 6.11410 6.19207 6.23718 6.29701 6.38476 6.52229 6.57569 6.63892 6.77574 6.84686 6.93743 6.95314 6.98486 6.98879 7.06330 7.17909 7.23762 7.40141 7.43628 7.58204 7.62770 7.94363 8.23747 8.54464 8.94689 9.31642 9.97227 10.49215 11.44571 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.003781 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.379901 B = 7404.452464 C = 8469.880339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.013 3.987 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.281 4.281 8 H 0.065 0.935 9 N -0.579 5.579 10 C 0.158 3.842 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.122 4.122 14 C 0.131 3.869 15 H 0.129 0.871 16 N -0.733 5.733 17 C 0.468 3.532 18 O -0.460 6.460 19 C 0.087 3.913 20 N -0.463 5.463 21 C 0.066 3.934 22 C -0.210 4.210 23 C -0.108 4.108 24 C -0.075 4.075 25 C -0.152 4.152 26 C -0.105 4.105 27 C -0.120 4.120 28 C 0.113 3.887 29 C 0.160 3.840 30 H 0.263 0.737 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.381 0.619 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.164 0.836 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.093 0.907 49 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 -5.281 6.216 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.410 4.410 8 H 0.083 0.917 9 N -0.301 5.301 10 C 0.029 3.971 11 C -0.186 4.186 12 C -0.143 4.143 13 C -0.160 4.160 14 C 0.027 3.973 15 H 0.146 0.854 16 N -0.387 5.387 17 C 0.248 3.752 18 O -0.330 6.330 19 C -0.039 4.039 20 N -0.145 5.145 21 C -0.059 4.059 22 C -0.235 4.235 23 C -0.112 4.112 24 C -0.093 4.093 25 C -0.171 4.171 26 C -0.124 4.124 27 C -0.141 4.141 28 C 0.008 3.992 29 C 0.035 3.965 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.213 0.787 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.182 0.818 43 H 0.161 0.839 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.132 0.868 48 H 0.111 0.889 49 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -12.826 -4.630 5.815 14.824 hybrid contribution 0.433 0.303 0.063 0.532 sum -12.393 -4.327 5.878 14.383 Atomic orbital electron populations 1.69799 1.03907 1.26545 1.49594 1.24977 0.95280 0.97878 1.00747 0.86624 0.79105 0.84700 0.77783 1.21242 1.21817 1.21395 1.18948 0.94424 0.85530 1.42122 0.91740 1.44003 1.35454 1.01025 1.49592 1.20414 0.96375 0.87873 0.92484 1.22916 0.95869 0.98080 1.01740 1.21317 0.95576 1.02081 0.95336 1.21382 0.99292 0.97294 0.98005 1.21208 0.84756 0.96666 0.94632 0.85370 1.46454 1.33705 1.08778 1.49749 1.20697 0.84906 0.85367 0.84193 1.91001 1.62769 1.32433 1.46754 1.21690 0.97567 0.82397 1.02263 1.43374 1.37726 1.10517 1.22886 1.21728 1.00546 0.89402 0.94185 1.21569 1.03879 0.98231 0.99796 1.19178 1.01051 0.93369 0.97618 1.20203 0.95757 0.98489 0.94866 1.20543 1.02468 0.96144 0.97946 1.20718 0.98518 0.93872 0.99332 1.19981 0.99423 1.00279 0.94408 1.18146 0.94627 0.93051 0.93423 1.20387 0.85496 1.00955 0.89705 0.92594 0.94995 0.95691 0.93018 0.93977 0.90685 0.94491 0.92030 0.92934 0.78727 0.87165 0.87769 0.81824 0.83866 0.86465 0.86480 0.86176 0.86826 0.88919 0.97958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.43 7.78 55.49 0.43 -24.00 16 2 C 0.01 0.37 4.86 -17.43 -0.08 0.29 16 3 Si 0.89 22.47 29.60 -169.99 -5.03 17.44 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.28 -7.68 9.61 -15.06 -0.14 -7.83 16 8 H 0.06 1.77 7.90 -52.48 -0.41 1.36 16 9 N -0.58 -14.07 2.60 -175.08 -0.45 -14.53 16 10 C 0.16 3.25 5.18 -4.67 -0.02 3.23 16 11 C -0.14 -2.68 6.41 -24.76 -0.16 -2.84 16 12 C -0.11 -1.95 5.66 -27.10 -0.15 -2.10 16 13 C -0.12 -2.06 5.24 -28.31 -0.15 -2.20 16 14 C 0.13 2.60 1.82 -71.39 -0.13 2.47 16 15 H 0.13 3.22 4.61 -51.93 -0.24 2.98 16 16 N -0.73 -11.68 4.91 -57.21 -0.28 -11.96 16 17 C 0.47 8.12 7.74 -10.98 -0.08 8.03 16 18 O -0.46 -10.70 13.71 5.56 0.08 -10.62 16 19 C 0.09 1.09 6.48 -5.20 -0.03 1.05 16 20 N -0.46 -6.94 2.27 -115.71 -0.26 -7.21 16 21 C 0.07 0.94 11.27 -16.73 -0.19 0.75 16 22 C -0.21 -3.05 11.08 -37.67 -0.42 -3.47 16 23 C -0.11 -1.72 6.37 -105.14 -0.67 -2.39 16 24 C -0.07 -1.05 10.05 -39.64 -0.40 -1.45 16 25 C -0.15 -1.99 9.97 -39.94 -0.40 -2.39 16 26 C -0.11 -1.42 10.01 -39.54 -0.40 -1.81 16 27 C -0.12 -1.81 10.00 -39.43 -0.39 -2.21 16 28 C 0.11 1.85 6.80 -83.99 -0.57 1.28 16 29 C 0.16 3.63 4.63 -5.20 -0.02 3.60 16 30 H 0.26 7.86 8.06 -40.82 -0.33 7.53 16 31 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 32 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.69 6.82 -51.93 -0.35 1.34 16 36 H 0.04 0.60 8.14 -51.94 -0.42 0.18 16 37 H 0.06 1.00 6.27 -51.93 -0.33 0.68 16 38 H 0.05 0.77 8.03 -51.93 -0.42 0.35 16 39 H 0.38 4.49 8.58 -40.82 -0.35 4.14 16 40 H 0.11 1.02 8.12 -51.93 -0.42 0.60 16 41 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 42 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 48 H 0.09 2.48 5.79 -51.93 -0.30 2.18 16 49 H 0.00 0.05 8.12 -51.93 -0.42 -0.37 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -33.17 383.43 -11.53 -44.71 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.37 Total: 8.38 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -4.42 Total: -7.98 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.57 Total: -57.70 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.17 -11.53 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034532489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.400 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds