Wall clock time and date at job start Wed Apr 1 2020 00:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48504 * 109.47129 * 239.99999 * 3 2 1 5 5 H 1.48496 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47115 * 120.00162 * 3 2 1 7 7 C 1.38816 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00019 * 158.63103 * 7 2 1 9 9 N 1.36931 * 120.00192 * 338.62730 * 7 2 1 10 10 C 1.43427 * 120.54303 * 156.25451 * 9 7 2 11 11 C 1.54894 * 116.08227 * 271.59505 * 10 9 7 12 12 C 1.54839 * 110.14431 * 318.63504 * 11 10 9 13 13 C 1.50311 * 110.68971 * 321.13359 * 12 11 10 14 14 C 1.52529 * 105.32956 * 97.83533 * 13 12 11 15 15 H 1.09004 * 108.52098 * 31.56875 * 14 13 12 16 16 N 1.46498 * 108.52055 * 149.24095 * 14 13 12 17 17 C 1.34783 * 119.99929 * 207.28628 * 16 14 13 18 18 O 1.21278 * 120.00115 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99966 * 180.02562 * 17 16 14 20 20 N 1.46493 * 109.47082 * 180.02562 * 19 17 16 21 21 C 1.36834 * 125.06535 * 265.06680 * 20 19 17 22 22 C 1.34236 * 109.93230 * 180.31711 * 21 20 19 23 23 C 1.46489 * 106.99469 * 359.77432 * 22 21 20 24 24 C 1.39634 * 134.02603 * 179.97438 * 23 22 21 25 25 C 1.36630 * 119.75894 * 180.02562 * 24 23 22 26 26 C 1.38833 * 120.53208 * 359.97438 * 25 24 23 27 27 C 1.37753 * 120.66216 * 0.02562 * 26 25 24 28 28 C 1.37691 * 125.06435 * 85.00019 * 20 19 17 29 29 C 1.46235 * 114.15884 * 270.40373 * 14 13 12 30 30 H 0.96996 * 120.00642 * 0.02562 * 1 2 3 31 31 H 1.09004 * 108.15453 * 33.31403 * 10 9 7 32 32 H 1.09006 * 108.16188 * 150.08164 * 10 9 7 33 33 H 1.09002 * 109.35990 * 78.84176 * 11 10 9 34 34 H 1.09007 * 109.36163 * 198.56547 * 11 10 9 35 35 H 1.09003 * 109.20674 * 81.47177 * 12 11 10 36 36 H 1.08989 * 109.21416 * 200.83331 * 12 11 10 37 37 H 1.08996 * 110.38726 * 338.84298 * 13 12 11 38 38 H 1.08998 * 110.19564 * 216.72897 * 13 12 11 39 39 H 0.97006 * 120.00127 * 27.28904 * 16 14 13 40 40 H 1.09001 * 109.47416 * 59.99434 * 19 17 16 41 41 H 1.09008 * 109.46826 * 300.00079 * 19 17 16 42 42 H 1.08001 * 125.02808 * 0.09029 * 21 20 19 43 43 H 1.07996 * 126.50390 * 179.79748 * 22 21 20 44 44 H 1.07994 * 120.12563 * 0.04584 * 24 23 22 45 45 H 1.08004 * 119.73441 * 179.97438 * 25 24 23 46 46 H 1.07992 * 119.66948 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.10551 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.84487 * 177.99363 * 29 14 13 49 49 H 1.08993 * 109.84991 * 298.97578 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0346 -1.2341 -0.3414 9 7 1.3963 -2.3475 0.4311 10 6 1.8580 -3.6322 -0.0087 11 6 1.2348 -4.1669 -1.3220 12 6 -0.2849 -3.8713 -1.3501 13 6 -0.8890 -4.0659 0.0124 14 6 -0.9651 -2.6701 0.6229 15 1 -1.1219 -1.9493 -0.1797 16 7 -2.1187 -2.6188 1.5244 17 6 -2.7401 -1.4457 1.7575 18 8 -2.3446 -0.4327 1.2205 19 6 -3.9264 -1.3927 2.6853 20 7 -4.4188 -0.0156 2.7703 21 6 -4.0694 0.8858 3.7386 22 6 -4.7023 2.0509 3.5290 23 6 -5.5200 1.8835 2.3251 24 6 -6.3857 2.7187 1.6161 25 6 -7.0166 2.2498 0.4985 26 6 -6.8035 0.9494 0.0615 27 6 -5.9536 0.1087 0.7460 28 6 -5.3012 0.5649 1.8869 29 6 0.2281 -2.2788 1.3723 30 1 -0.4851 0.8400 -0.0004 31 1 2.9383 -3.5770 -0.1431 32 1 1.6527 -4.3555 0.7806 33 1 1.7131 -3.6816 -2.1728 34 1 1.3926 -5.2437 -1.3847 35 1 -0.4440 -2.8416 -1.6704 36 1 -0.7684 -4.5455 -2.0569 37 1 -0.2540 -4.7096 0.6210 38 1 -1.8876 -4.4937 -0.0763 39 1 -2.4352 -3.4290 1.9537 40 1 -3.6280 -1.7342 3.6766 41 1 -4.7169 -2.0379 2.3016 42 1 -3.3884 0.6879 4.5531 43 1 -4.6234 2.9427 4.1330 44 1 -6.5558 3.7316 1.9496 45 1 -7.6864 2.8960 -0.0493 46 1 -7.3097 0.5931 -0.8234 47 1 -5.7947 -0.9014 0.3982 48 1 0.1132 -1.2613 1.7460 49 1 0.3832 -2.9644 2.2054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034532489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:26 Heat of formation + Delta-G solvation = 52.810869 kcal Electronic energy + Delta-G solvation = -30785.686279 eV Core-core repulsion = 26906.897080 eV Total energy + Delta-G solvation = -3878.789199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25865 -40.74427 -39.05388 -37.76151 -35.71191 -34.82532 -33.83961 -32.63970 -31.79918 -30.92174 -29.73990 -28.09086 -27.54898 -25.82144 -24.60389 -23.57708 -22.54565 -22.03089 -21.38936 -20.95157 -20.34047 -18.59144 -18.25377 -17.99183 -17.33933 -16.84226 -16.69137 -16.27242 -16.10072 -15.80926 -15.53138 -15.27747 -15.05441 -14.83273 -14.63299 -14.39027 -13.98738 -13.92996 -13.84280 -13.49326 -13.45515 -13.24203 -13.05540 -12.90229 -12.64888 -12.47923 -12.45910 -12.42523 -12.08821 -11.89555 -11.72834 -11.62274 -11.29711 -11.19461 -11.10594 -10.74082 -10.44319 -10.31883 -9.75780 -9.04268 -8.57015 -8.51965 -7.70244 -5.14146 0.25547 0.74432 1.40729 1.44038 1.50104 1.67555 1.95130 1.97996 2.51254 2.60196 3.04967 3.37613 3.70299 3.77387 3.87263 4.00235 4.02977 4.09825 4.16543 4.20965 4.24224 4.29678 4.31896 4.58367 4.61475 4.62154 4.68517 4.74028 4.80863 4.85345 4.93648 4.95774 5.05787 5.07423 5.19350 5.29094 5.37036 5.43982 5.46055 5.58669 5.64780 5.66695 5.71709 5.76530 5.89194 5.92958 5.94748 6.01568 6.34908 6.39875 6.45557 6.92593 7.23542 7.72372 7.97940 8.46492 9.26004 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.003781 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.379901 B = 7404.452464 C = 8469.880339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C -0.032 4.032 3 Si 0.935 3.065 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.284 1.284 7 C -0.285 4.285 8 H 0.057 0.943 9 N -0.596 5.596 10 C 0.150 3.850 11 C -0.138 4.138 12 C -0.102 4.102 13 C -0.108 4.108 14 C 0.142 3.858 15 H 0.076 0.924 16 N -0.719 5.719 17 C 0.463 3.537 18 O -0.526 6.526 19 C 0.096 3.904 20 N -0.470 5.470 21 C 0.056 3.944 22 C -0.227 4.227 23 C -0.139 4.139 24 C -0.088 4.088 25 C -0.155 4.155 26 C -0.110 4.110 27 C -0.141 4.141 28 C 0.086 3.914 29 C 0.169 3.831 30 H 0.242 0.758 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.407 0.593 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.190 0.810 43 H 0.160 0.840 44 H 0.136 0.864 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.120 0.880 48 H 0.046 0.954 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 -7.868 6.980 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.232 4.232 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.235 1.235 6 H -0.210 1.210 7 C -0.415 4.415 8 H 0.075 0.925 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.178 4.178 12 C -0.140 4.140 13 C -0.146 4.146 14 C 0.037 3.963 15 H 0.094 0.906 16 N -0.374 5.374 17 C 0.246 3.754 18 O -0.400 6.400 19 C -0.030 4.030 20 N -0.152 5.152 21 C -0.069 4.069 22 C -0.252 4.252 23 C -0.144 4.144 24 C -0.107 4.107 25 C -0.174 4.174 26 C -0.129 4.129 27 C -0.161 4.161 28 C -0.020 4.020 29 C 0.044 3.956 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.243 0.757 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.207 0.793 43 H 0.178 0.822 44 H 0.154 0.846 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.138 0.862 48 H 0.065 0.935 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -13.850 -7.290 6.601 16.987 hybrid contribution 0.783 1.085 -0.196 1.352 sum -13.068 -6.205 6.405 15.821 Atomic orbital electron populations 1.70047 1.04326 1.25044 1.50603 1.25518 0.95947 0.99960 1.01791 0.85865 0.77830 0.81886 0.77909 1.20612 1.23495 1.21045 1.19075 0.94224 0.86976 1.41268 0.92541 1.44142 1.36050 1.01469 1.50216 1.20574 0.96033 0.86786 0.94369 1.22829 0.95470 1.00101 0.99432 1.21250 0.96010 0.99632 0.97082 1.21308 1.01334 0.95352 0.96629 1.20627 0.84850 0.97377 0.93441 0.90599 1.46178 1.32406 1.09813 1.48977 1.21577 0.85548 0.84516 0.83760 1.90990 1.64912 1.34690 1.49379 1.21841 0.96042 0.82033 1.03034 1.43576 1.37471 1.11444 1.22697 1.22238 1.00574 0.89369 0.94671 1.21917 1.04071 0.99258 0.99925 1.19647 1.02099 0.94009 0.98610 1.20562 0.95587 0.99330 0.95202 1.20935 1.02371 0.96446 0.97667 1.21120 0.97987 0.93974 0.99817 1.20247 1.00165 1.01093 0.94628 1.18516 0.95496 0.93733 0.94232 1.20238 0.86367 0.98785 0.90235 0.94801 0.95712 0.93082 0.95056 0.90011 0.95752 0.91721 0.90263 0.89804 0.75724 0.83224 0.84749 0.79335 0.82204 0.84629 0.83647 0.83685 0.86180 0.93537 0.95954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.52 7.78 21.65 0.17 -51.36 16 2 C -0.03 -1.83 4.86 84.86 0.41 -1.42 16 3 Si 0.93 47.97 29.60 68.60 2.03 50.00 16 4 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.31 -16.47 7.11 99.48 0.71 -15.77 16 6 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.29 -15.98 9.61 84.04 0.81 -15.17 16 8 H 0.06 3.19 7.90 -2.91 -0.02 3.16 16 9 N -0.60 -29.08 2.60 -707.84 -1.84 -30.92 16 10 C 0.15 5.95 5.18 87.59 0.45 6.41 16 11 C -0.14 -4.80 6.41 31.87 0.20 -4.60 16 12 C -0.10 -3.58 5.66 30.35 0.17 -3.41 16 13 C -0.11 -3.33 5.24 29.57 0.16 -3.17 16 14 C 0.14 5.58 1.82 42.75 0.08 5.65 16 15 H 0.08 3.94 4.61 -2.38 -0.01 3.93 16 16 N -0.72 -21.74 4.91 -453.31 -2.22 -23.96 16 17 C 0.46 15.89 7.74 87.66 0.68 16.56 16 18 O -0.53 -25.45 13.71 -3.02 -0.04 -25.49 16 19 C 0.10 2.20 6.48 85.63 0.55 2.76 16 20 N -0.47 -13.87 2.27 -520.00 -1.18 -15.05 16 21 C 0.06 1.58 11.27 83.00 0.94 2.52 16 22 C -0.23 -6.68 11.08 23.51 0.26 -6.42 16 23 C -0.14 -4.52 6.37 -20.20 -0.13 -4.65 16 24 C -0.09 -2.49 10.05 22.23 0.22 -2.26 16 25 C -0.16 -3.94 9.97 22.04 0.22 -3.72 16 26 C -0.11 -2.89 10.01 22.30 0.22 -2.67 16 27 C -0.14 -4.24 10.00 22.37 0.22 -4.02 16 28 C 0.09 2.83 6.80 39.03 0.27 3.10 16 29 C 0.17 7.65 4.63 83.58 0.39 8.04 16 30 H 0.24 15.40 8.06 -92.71 -0.75 14.65 16 31 H 0.02 1.00 7.99 -2.38 -0.02 0.98 16 32 H 0.05 1.75 6.87 -2.38 -0.02 1.74 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.02 1.10 6.82 -2.39 -0.02 1.09 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.20 6.27 -2.39 -0.01 2.18 16 38 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 39 H 0.41 8.11 8.58 -92.70 -0.80 7.32 16 40 H 0.15 2.24 8.12 -2.39 -0.02 2.22 16 41 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 44 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 45 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 46 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 47 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 48 H 0.05 2.56 5.79 -2.39 -0.01 2.55 16 49 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 Total: -1.00 -78.91 383.43 3.23 -75.69 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.19 Total: 27.57 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 6.12 Total: -6.48 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -5.07 Total: -121.29 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.04 Total: -25.49 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -78.91 3.23 -75.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034532489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.497 kcal (2) G-P(sol) polarization free energy of solvation -78.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds