Wall clock time and date at job start Wed Apr 1 2020 00:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00048 * 2 1 4 4 H 1.48504 * 109.47615 * 270.00603 * 3 2 1 5 5 H 1.48508 * 109.47059 * 30.00456 * 3 2 1 6 6 H 1.48499 * 109.47124 * 149.99997 * 3 2 1 7 7 C 1.38816 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99267 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00196 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99709 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47173 * 35.00133 * 10 9 7 12 12 C 1.53005 * 109.47092 * 154.99969 * 10 9 7 13 13 C 1.52992 * 109.46962 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47303 * 299.99536 * 13 12 10 15 15 H 1.08993 * 109.47257 * 300.00934 * 14 13 12 16 16 N 1.46503 * 109.47267 * 180.02562 * 14 13 12 17 17 C 1.34775 * 119.99884 * 155.00134 * 16 14 13 18 18 O 1.21289 * 119.99850 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00057 * 179.97438 * 17 16 14 20 20 N 1.46499 * 109.47097 * 180.02562 * 19 17 16 21 21 C 1.36839 * 125.06099 * 265.02572 * 20 19 17 22 22 C 1.34238 * 109.92649 * 179.97438 * 21 20 19 23 23 C 1.46489 * 106.99945 * 0.02562 * 22 21 20 24 24 C 1.39630 * 134.03224 * 179.97438 * 23 22 21 25 25 C 1.36622 * 119.76576 * 179.97438 * 24 23 22 26 26 C 1.38836 * 120.52657 * 359.97438 * 25 24 23 27 27 C 1.37747 * 120.66455 * 0.28149 * 26 25 24 28 28 C 1.37680 * 125.06307 * 85.00542 * 20 19 17 29 29 C 1.53005 * 109.46732 * 60.00323 * 14 13 12 30 30 C 1.52993 * 109.47191 * 275.00020 * 10 9 7 31 31 H 0.97005 * 119.99977 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99877 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47169 * 59.99608 * 12 10 9 34 34 H 1.09000 * 109.46589 * 300.00119 * 12 10 9 35 35 H 1.09006 * 109.46795 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.47727 * 60.00182 * 13 12 10 37 37 H 0.96998 * 119.99955 * 335.00320 * 16 14 13 38 38 H 1.09000 * 109.46708 * 60.00414 * 19 17 16 39 39 H 1.08994 * 109.47025 * 300.00706 * 19 17 16 40 40 H 1.07996 * 125.03543 * 359.96209 * 21 20 19 41 41 H 1.07998 * 126.49612 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.11474 * 0.02562 * 24 23 22 43 43 H 1.07995 * 119.73746 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.66275 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.10491 * 179.70310 * 27 26 25 46 46 H 1.09004 * 109.46977 * 59.99876 * 29 14 13 47 47 H 1.09001 * 109.47239 * 180.02562 * 29 14 13 48 48 H 1.09004 * 109.47154 * 300.00124 * 30 10 9 49 49 H 1.09001 * 109.47503 * 59.99516 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 0.5889 12 6 1.1808 -4.7522 0.6091 13 6 1.9460 -6.0770 0.6097 14 6 2.3104 -6.4562 -0.8271 15 1 1.3999 -6.5627 -1.4168 16 7 3.0426 -7.7251 -0.8266 17 6 3.0340 -8.5085 -1.9233 18 8 2.4205 -8.1627 -2.9108 19 6 3.7877 -9.8135 -1.9230 20 7 3.6235 -10.4725 -3.2211 21 6 2.6826 -11.4243 -3.5059 22 6 2.8038 -11.8197 -4.7830 23 6 3.9134 -11.0593 -5.3632 24 6 4.5111 -11.0244 -6.6246 25 6 5.5598 -10.1795 -6.8551 26 6 6.0359 -9.3546 -5.8450 27 6 5.4644 -9.3768 -4.5919 28 6 4.3926 -10.2262 -4.3361 29 6 3.1876 -5.3608 -1.4368 30 6 2.4219 -4.0356 -1.4375 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 0.0002 33 1 0.2701 -4.8584 0.0197 34 1 0.9216 -4.4822 1.6329 35 1 1.3209 -6.8575 1.0436 36 1 2.8565 -5.9705 1.1994 37 1 3.5335 -8.0014 -0.0370 38 1 3.3972 -10.4583 -1.1357 39 1 4.8457 -9.6219 -1.7444 40 1 1.9510 -11.8016 -2.8068 41 1 2.1981 -12.5582 -5.2871 42 1 4.1452 -11.6623 -7.4155 43 1 6.0215 -10.1526 -7.8310 44 1 6.8660 -8.6924 -6.0424 45 1 5.8451 -8.7347 -3.8114 46 1 4.0981 -5.2543 -0.8470 47 1 3.4468 -5.6307 -2.4605 48 1 1.5112 -4.1419 -2.0270 49 1 3.0467 -3.2553 -1.8719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034796949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:01 Heat of formation + Delta-G solvation = 29.555020 kcal Electronic energy + Delta-G solvation = -28828.948708 eV Core-core repulsion = 24949.151060 eV Total energy + Delta-G solvation = -3879.797648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61369 -39.97918 -38.07977 -37.07492 -34.93952 -33.37483 -32.92541 -30.97482 -30.47594 -30.38876 -29.06153 -27.95500 -26.52516 -23.66476 -22.89162 -22.43667 -21.84647 -21.40136 -20.73779 -20.28153 -19.51209 -17.73400 -17.46693 -16.97143 -16.68394 -16.10213 -15.58588 -15.46272 -15.14255 -14.74904 -14.22936 -14.12468 -13.95479 -13.82084 -13.61726 -13.59120 -13.32010 -13.09518 -12.82718 -12.62150 -12.44153 -12.06565 -11.86216 -11.78763 -11.74738 -11.48520 -11.09653 -11.01478 -10.84126 -10.81022 -10.70719 -10.22994 -10.17114 -10.13578 -9.80759 -9.75898 -9.59794 -9.09184 -8.86659 -8.31954 -7.83630 -6.95349 -5.76363 -3.04999 0.98800 1.48044 2.28186 2.32873 2.58765 3.06214 3.43285 3.48287 3.49876 3.80238 4.29213 4.35331 4.49137 4.58457 4.58947 4.59881 4.83655 4.86317 4.97621 4.98063 5.21741 5.26969 5.31064 5.47675 5.49156 5.54992 5.63081 5.63854 5.67672 5.77052 5.78927 5.82525 5.90744 5.97768 6.17818 6.18762 6.24690 6.31987 6.42389 6.46862 6.51868 6.59226 6.60231 6.61161 6.68916 6.95465 7.00175 7.05778 7.12409 7.28737 7.69948 7.97745 8.42425 9.53342 10.11714 10.46152 11.46377 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002058 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.561228 B =13600.346232 C =14553.135465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.178 3.822 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.146 3.854 15 H 0.087 0.913 16 N -0.723 5.723 17 C 0.488 3.512 18 O -0.515 6.515 19 C 0.091 3.909 20 N -0.469 5.469 21 C 0.059 3.941 22 C -0.203 4.203 23 C -0.108 4.108 24 C -0.073 4.073 25 C -0.149 4.149 26 C -0.100 4.100 27 C -0.125 4.125 28 C 0.110 3.890 29 C -0.123 4.123 30 C -0.132 4.132 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.238 -27.789 -4.105 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.160 4.160 13 C -0.156 4.156 14 C 0.042 3.958 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.271 3.729 18 O -0.389 6.389 19 C -0.035 4.035 20 N -0.152 5.152 21 C -0.065 4.065 22 C -0.228 4.228 23 C -0.113 4.113 24 C -0.091 4.091 25 C -0.168 4.168 26 C -0.120 4.120 27 C -0.146 4.146 28 C 0.004 3.996 29 C -0.162 4.162 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.184 0.816 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.901 -27.244 -4.493 29.334 hybrid contribution 0.316 0.976 0.427 1.111 sum 10.218 -26.269 -4.066 28.477 Atomic orbital electron populations 1.69663 1.05095 1.25617 1.57782 1.24747 0.95520 0.97688 1.03125 0.86207 0.78620 0.83943 0.77526 1.21740 1.21798 1.20807 1.19233 0.90949 0.84150 1.42527 0.91244 1.42429 1.05795 0.99791 1.88561 1.20233 0.94274 0.86000 0.92735 0.93611 1.21756 0.98955 0.93431 1.01833 1.21744 1.00843 0.98337 0.94701 1.21142 0.95435 0.81550 0.97626 0.89487 1.46141 1.53487 1.22006 1.15824 1.20921 0.82184 0.85944 0.83815 1.90812 1.42328 1.73083 1.32718 1.21590 1.02863 0.93492 0.85570 1.43338 1.28864 1.34321 1.08710 1.21751 0.94192 0.92851 0.97739 1.21641 1.01488 1.05633 0.93997 1.19199 0.98655 0.99713 0.93720 1.20249 0.95520 0.98584 0.94761 1.20613 0.98529 0.98340 0.99297 1.20794 0.99849 0.99093 0.92223 1.20002 0.96489 0.99971 0.98098 1.18175 0.95429 0.99320 0.86639 1.21897 0.98554 0.95427 1.00348 1.22237 0.99772 0.94440 1.00870 0.93535 0.78298 0.91968 0.91291 0.91898 0.91513 0.76827 0.86288 0.86817 0.81637 0.83584 0.86189 0.86162 0.85860 0.86725 0.92294 0.92478 0.92511 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.06 5.12 -53.42 -0.27 -18.33 16 10 C 0.18 3.41 2.77 -67.93 -0.19 3.23 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.12 -1.88 5.39 -26.73 -0.14 -2.02 16 13 C -0.12 -1.36 5.39 -26.73 -0.14 -1.50 16 14 C 0.15 1.82 2.45 -67.93 -0.17 1.66 16 15 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 16 N -0.72 -6.68 5.08 -53.80 -0.27 -6.95 16 17 C 0.49 5.34 7.86 -10.99 -0.09 5.25 16 18 O -0.52 -8.44 16.08 5.55 0.09 -8.35 16 19 C 0.09 0.66 6.48 -5.19 -0.03 0.62 16 20 N -0.47 -4.83 2.27 -115.71 -0.26 -5.09 16 21 C 0.06 0.55 11.28 -16.73 -0.19 0.36 16 22 C -0.20 -2.07 11.08 -37.67 -0.42 -2.49 16 23 C -0.11 -1.30 6.37 -105.14 -0.67 -1.97 16 24 C -0.07 -0.77 10.05 -39.65 -0.40 -1.16 16 25 C -0.15 -1.47 9.97 -39.94 -0.40 -1.87 16 26 C -0.10 -1.03 10.01 -39.54 -0.40 -1.42 16 27 C -0.13 -1.41 10.00 -39.43 -0.39 -1.81 16 28 C 0.11 1.33 6.80 -83.99 -0.57 0.76 16 29 C -0.12 -1.78 5.50 -26.70 -0.15 -1.93 16 30 C -0.13 -2.40 5.51 -26.71 -0.15 -2.54 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 2.25 8.60 -40.82 -0.35 1.90 16 38 H 0.12 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -35.80 402.76 -11.48 -47.28 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.79 Total: 9.58 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -4.74 Total: -14.08 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.08 Total: -57.96 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.80 -11.48 -47.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034796949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.835 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds