Wall clock time and date at job start Wed Apr 1 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99986 * 2 1 4 4 H 1.48497 * 109.46994 * 274.99876 * 3 2 1 5 5 H 1.48494 * 109.47178 * 34.99958 * 3 2 1 6 6 H 1.48502 * 109.46838 * 154.99924 * 3 2 1 7 7 C 1.38818 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99696 * 185.04305 * 7 2 1 9 9 N 1.36938 * 119.99882 * 5.05069 * 7 2 1 10 10 C 1.47665 * 134.44983 * 175.03292 * 9 7 2 11 11 C 1.53517 * 85.97360 * 204.28926 * 10 9 7 12 12 C 1.47658 * 134.46044 * 355.00011 * 9 7 2 13 13 C 1.52679 * 113.56903 * 91.01928 * 11 10 9 14 14 C 1.53335 * 109.11243 * 73.81539 * 13 11 10 15 15 N 1.46885 * 108.76267 * 52.40256 * 14 13 11 16 16 C 1.34775 * 120.46265 * 124.47491 * 15 14 13 17 17 O 1.21559 * 120.00016 * 4.21124 * 16 15 14 18 18 C 1.47840 * 120.00029 * 184.21270 * 16 15 14 19 19 C 1.40024 * 120.55778 * 304.95232 * 18 16 15 20 20 C 1.38353 * 118.28661 * 179.70391 * 19 18 16 21 21 C 1.38359 * 119.30651 * 0.27061 * 20 19 18 22 22 N 1.31924 * 121.07725 * 359.97438 * 21 20 19 23 23 C 1.31698 * 121.87619 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.71292 * 179.97438 * 23 22 21 25 25 C 1.53002 * 117.50068 * 3.70533 * 24 23 22 26 26 C 1.53004 * 117.49913 * 295.04449 * 24 23 22 27 27 C 1.46879 * 119.07019 * 304.74511 * 15 14 13 28 28 C 1.52668 * 113.56554 * 222.23227 * 11 10 9 29 29 H 0.97000 * 119.99957 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.79201 * 90.03013 * 10 9 7 31 31 H 1.08994 * 113.79516 * 318.55334 * 10 9 7 32 32 H 1.09002 * 113.79188 * 41.43182 * 12 9 7 33 33 H 1.09004 * 113.79345 * 269.97266 * 12 9 7 34 34 H 1.08998 * 109.52935 * 313.92055 * 13 11 10 35 35 H 1.08994 * 109.52763 * 193.70669 * 13 11 10 36 36 H 1.08999 * 109.58740 * 292.61996 * 14 13 11 37 37 H 1.09000 * 109.58905 * 172.18880 * 14 13 11 38 38 H 1.07999 * 120.85592 * 359.97062 * 19 18 16 39 39 H 1.08000 * 120.34834 * 180.25244 * 20 19 18 40 40 H 1.07998 * 119.46057 * 180.02562 * 21 20 19 41 41 H 1.09004 * 115.55520 * 149.37594 * 24 23 22 42 42 H 1.09000 * 117.49981 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.50404 * 145.02509 * 25 24 23 44 44 H 1.09005 * 117.49934 * 214.97791 * 26 24 23 45 45 H 1.09006 * 117.49973 * 359.97438 * 26 24 23 46 46 H 1.08993 * 109.58878 * 175.04212 * 27 15 14 47 47 H 1.09003 * 109.58805 * 295.48088 * 27 15 14 48 48 H 1.08999 * 109.53093 * 46.07860 * 28 11 10 49 49 H 1.09000 * 109.53109 * 166.22330 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5045 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0828 9 7 1.3295 -2.3858 -0.1033 10 6 1.7300 -3.8018 -0.2262 11 6 0.3580 -4.0209 -0.8792 12 6 -0.0991 -2.7578 -0.1367 13 6 0.3730 -3.8660 -2.3980 14 6 1.0544 -5.0903 -3.0208 15 7 0.4118 -6.3043 -2.5005 16 6 -0.1064 -7.2185 -3.3445 17 8 0.0233 -7.0796 -4.5451 18 6 -0.8326 -8.3900 -2.8100 19 6 -0.2254 -9.2389 -1.8765 20 6 -0.9502 -10.3180 -1.4028 21 6 -2.2373 -10.5252 -1.8663 22 7 -2.7821 -9.7113 -2.7501 23 6 -2.1328 -8.6711 -3.2306 24 6 -2.8022 -7.7735 -4.2392 25 6 -4.2595 -8.0742 -4.5954 26 6 -3.1470 -8.3764 -5.6025 27 6 0.3366 -6.5052 -1.0475 28 6 -0.3442 -5.2933 -0.4117 29 1 -0.4850 0.8400 0.0004 30 1 1.8477 -4.3101 0.7307 31 1 2.5696 -3.9642 -0.9021 32 1 -0.7133 -2.0904 -0.7413 33 1 -0.5251 -2.9559 0.8469 34 1 0.9250 -2.9654 -2.6670 35 1 -0.6499 -3.7913 -2.7667 36 1 2.1117 -5.0943 -2.7559 37 1 0.9473 -5.0561 -4.1050 38 1 0.7812 -9.0536 -1.5319 39 1 -0.5159 -10.9917 -0.6790 40 1 -2.8055 -11.3665 -1.4979 41 1 -2.4957 -6.7277 -4.2145 42 1 -4.7340 -8.9216 -4.1005 43 1 -4.9116 -7.2264 -4.8053 44 1 -3.0677 -7.7272 -6.4746 45 1 -2.8893 -9.4222 -5.7701 46 1 -0.2432 -7.4027 -0.8322 47 1 1.3423 -6.6108 -0.6406 48 1 -0.2815 -5.3662 0.6740 49 1 -1.3908 -5.2643 -0.7150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035744586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:20 Heat of formation + Delta-G solvation = 90.440927 kcal Electronic energy + Delta-G solvation = -30331.939915 eV Core-core repulsion = 26454.782478 eV Total energy + Delta-G solvation = -3877.157437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.19198 -39.85707 -38.50911 -37.05192 -35.76541 -33.17098 -32.40101 -31.58339 -30.87309 -30.26905 -26.96001 -25.24784 -24.94125 -24.79061 -23.46101 -22.94810 -22.38131 -21.30467 -21.01179 -19.86993 -18.02003 -17.32065 -16.95293 -16.72302 -16.45665 -16.05790 -15.40975 -14.95214 -14.87680 -14.71072 -14.50554 -14.14650 -13.90565 -13.80182 -13.69721 -13.54389 -13.01729 -12.90148 -12.50077 -12.38124 -12.12574 -11.85455 -11.73094 -11.59509 -11.14954 -11.06246 -10.95234 -10.89086 -10.85451 -10.59463 -10.36425 -10.25155 -10.22282 -9.99693 -9.71907 -9.66889 -9.46989 -9.37412 -9.07121 -8.75182 -8.48489 -6.86457 -5.76777 -3.08523 0.55419 0.87734 2.57226 2.95551 3.34528 3.38458 3.43525 3.45517 3.84523 3.92640 4.22112 4.40988 4.45170 4.49070 4.72654 4.86020 4.87516 4.95525 5.00110 5.01522 5.08220 5.22139 5.28643 5.31861 5.34395 5.47574 5.50171 5.57809 5.65800 5.69581 5.74413 5.78598 5.83385 5.88686 5.92617 5.99556 6.09930 6.15316 6.23488 6.28147 6.31213 6.40585 6.58816 6.62257 6.78998 6.84742 7.22685 7.37135 7.39071 7.58613 7.64726 7.99328 8.09385 9.05056 9.71499 10.61718 11.39987 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002719 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.079481 B =10293.809313 C =10754.891564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.608 5.608 10 C 0.127 3.873 11 C -0.108 4.108 12 C 0.170 3.830 13 C -0.096 4.096 14 C 0.114 3.886 15 N -0.596 5.596 16 C 0.563 3.437 17 O -0.530 6.530 18 C -0.166 4.166 19 C -0.044 4.044 20 C -0.184 4.184 21 C 0.119 3.881 22 N -0.483 5.483 23 C 0.208 3.792 24 C -0.118 4.118 25 C -0.159 4.159 26 C -0.149 4.149 27 C 0.103 3.897 28 C -0.118 4.118 29 H 0.253 0.747 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -22.103 -4.149 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.001 3.999 11 C -0.109 4.109 12 C 0.045 3.955 13 C -0.134 4.134 14 C -0.008 4.008 15 N -0.328 5.328 16 C 0.350 3.650 17 O -0.408 6.408 18 C -0.172 4.172 19 C -0.070 4.070 20 C -0.204 4.204 21 C -0.039 4.039 22 N -0.192 5.192 23 C 0.071 3.929 24 C -0.137 4.137 25 C -0.197 4.197 26 C -0.186 4.186 27 C -0.020 4.020 28 C -0.157 4.157 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.138 0.862 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.297 -21.804 -5.041 22.997 hybrid contribution 1.475 1.101 0.845 2.025 sum -3.822 -20.703 -4.196 21.467 Atomic orbital electron populations 1.69821 1.04978 1.25217 1.56643 1.24766 0.95608 0.97413 1.02508 0.86148 0.78635 0.83713 0.77546 1.21571 1.21782 1.20706 1.19013 0.90481 0.82131 1.43406 0.90462 1.45964 1.02303 0.99491 1.85669 1.22585 0.94396 0.86923 0.96041 1.22373 0.97980 0.95208 0.95355 1.22283 0.88238 0.89397 0.95567 1.21492 1.00911 0.97285 0.93717 1.21756 0.96413 0.82846 0.99765 1.48065 1.56933 1.21074 1.06748 1.18060 0.78538 0.82249 0.86182 1.90791 1.59033 1.76415 1.14523 1.20695 0.96620 0.98896 1.00946 1.21744 1.00064 0.92755 0.92473 1.22073 0.96385 0.99172 1.02742 1.22909 0.92669 0.96658 0.91619 1.67434 1.36931 1.03918 1.10902 1.20355 0.88837 0.91178 0.92573 1.20894 0.98802 0.98332 0.95643 1.23001 0.90241 1.03896 1.02519 1.22885 1.02227 1.01660 0.91870 1.21891 1.01473 0.99251 0.79378 1.21740 0.99640 0.94083 1.00261 0.93717 0.95219 0.94128 0.90772 0.95902 0.89277 0.92117 0.91192 0.89212 0.84073 0.84081 0.82272 0.86178 0.87412 0.88506 0.88169 0.88856 0.90143 0.90939 0.90638 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.36 55.49 0.63 -26.30 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.01 29.56 -169.99 -5.02 16.99 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.04 3.53 -179.80 -0.63 -15.67 16 10 C 0.13 2.43 7.73 -3.14 -0.02 2.41 16 11 C -0.11 -1.87 0.77 -154.42 -0.12 -1.99 16 12 C 0.17 3.86 6.71 -3.17 -0.02 3.84 16 13 C -0.10 -1.61 5.22 -26.72 -0.14 -1.75 16 14 C 0.11 1.65 6.29 -3.66 -0.02 1.62 16 15 N -0.60 -7.95 2.95 -174.07 -0.51 -8.46 16 16 C 0.56 7.99 6.27 -12.33 -0.08 7.91 16 17 O -0.53 -9.05 15.57 5.31 0.08 -8.97 16 18 C -0.17 -2.03 4.87 -104.82 -0.51 -2.54 16 19 C -0.04 -0.41 7.57 -38.87 -0.29 -0.70 16 20 C -0.18 -1.37 10.10 -39.49 -0.40 -1.77 16 21 C 0.12 1.00 11.17 -17.47 -0.20 0.81 16 22 N -0.48 -5.45 9.29 -9.14 -0.08 -5.53 16 23 C 0.21 2.60 6.49 -82.17 -0.53 2.06 16 24 C -0.12 -1.45 4.98 -91.77 -0.46 -1.91 16 25 C -0.16 -1.63 10.03 -26.69 -0.27 -1.90 16 26 C -0.15 -1.61 10.24 -26.69 -0.27 -1.88 16 27 C 0.10 1.18 5.50 -3.91 -0.02 1.16 16 28 C -0.12 -1.63 5.24 -26.97 -0.14 -1.77 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 32 H 0.07 1.89 7.01 -51.93 -0.36 1.53 16 33 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.09 1.72 8.01 -51.93 -0.42 1.30 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.97 7.49 -51.93 -0.39 0.59 16 37 H 0.09 1.35 6.99 -51.93 -0.36 0.98 16 38 H 0.14 1.06 7.50 -52.49 -0.39 0.66 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.63 7.31 -51.93 -0.38 1.25 16 42 H 0.11 1.11 7.54 -51.93 -0.39 0.72 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.08 0.80 4.67 -51.93 -0.24 0.56 16 47 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 48 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 49 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -32.70 388.22 -10.96 -43.66 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.51 Total: 1.40 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.75 Total: -2.96 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.60 Total: -55.97 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.70 -10.96 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035744586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.098 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds