Wall clock time and date at job start Wed Apr 1 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48503 * 109.46999 * 269.99375 * 3 2 1 5 5 H 1.48499 * 109.47437 * 29.99785 * 3 2 1 6 6 H 1.48505 * 109.47264 * 149.99709 * 3 2 1 7 7 C 1.38818 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00353 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99446 * 0.02562 * 7 2 1 10 10 C 1.47661 * 134.45214 * 179.97438 * 9 7 2 11 11 C 1.53507 * 85.97589 * 204.31264 * 10 9 7 12 12 C 1.47664 * 134.45766 * 359.97438 * 9 7 2 13 13 C 1.52675 * 113.57190 * 91.01733 * 11 10 9 14 14 C 1.53339 * 109.11132 * 73.80791 * 13 11 10 15 15 N 1.46882 * 108.76539 * 52.40307 * 14 13 11 16 16 C 1.34778 * 120.46879 * 124.48675 * 15 14 13 17 17 O 1.21510 * 119.99817 * 180.83420 * 16 15 14 18 18 C 1.48167 * 119.99620 * 0.82900 * 16 15 14 19 19 C 1.39311 * 119.72215 * 202.66730 * 18 16 15 20 20 C 1.38586 * 119.06144 * 179.75360 * 19 18 16 21 21 C 1.38635 * 118.48609 * 0.51776 * 20 19 18 22 22 C 1.50701 * 120.32334 * 179.70713 * 21 20 19 23 23 C 1.52998 * 117.49700 * 188.64654 * 22 21 20 24 24 C 1.52990 * 117.49938 * 120.02111 * 22 21 20 25 25 C 1.38558 * 119.34808 * 359.72366 * 21 20 19 26 26 N 1.31524 * 120.90819 * 0.02904 * 25 21 20 27 27 C 1.46894 * 119.06387 * 304.47113 * 15 14 13 28 28 C 1.52675 * 113.56165 * 222.22902 * 11 10 9 29 29 H 0.96990 * 120.00087 * 0.02562 * 1 2 3 30 30 H 1.08994 * 113.79197 * 90.04952 * 10 9 7 31 31 H 1.09002 * 113.79387 * 318.57306 * 10 9 7 32 32 H 1.09005 * 113.79172 * 41.41898 * 12 9 7 33 33 H 1.09001 * 113.79020 * 269.95087 * 12 9 7 34 34 H 1.08999 * 109.53276 * 193.69424 * 13 11 10 35 35 H 1.08999 * 109.53478 * 313.91995 * 13 11 10 36 36 H 1.08996 * 109.59377 * 172.19102 * 14 13 11 37 37 H 1.09010 * 109.58639 * 292.62787 * 14 13 11 38 38 H 1.08003 * 120.46601 * 359.97438 * 19 18 16 39 39 H 1.08002 * 120.76201 * 180.24548 * 20 19 18 40 40 H 1.08997 * 115.54700 * 334.34419 * 22 21 20 41 41 H 1.09006 * 117.49996 * 359.97438 * 23 22 21 42 42 H 1.08995 * 117.50588 * 145.01870 * 23 22 21 43 43 H 1.08996 * 117.49833 * 214.97491 * 24 22 21 44 44 H 1.09005 * 117.50107 * 359.97438 * 24 22 21 45 45 H 1.08006 * 119.54732 * 180.02562 * 25 21 20 46 46 H 1.09000 * 109.58896 * 295.75768 * 27 15 14 47 47 H 1.09001 * 109.71105 * 175.39374 * 27 15 14 48 48 H 1.09002 * 109.53081 * 46.09637 * 28 11 10 49 49 H 1.09005 * 109.52792 * 166.23783 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.7215 -3.8107 0.0005 11 6 0.3482 -4.0809 -0.6299 12 6 -0.1042 -2.7567 0.0005 13 6 0.3620 -4.0583 -2.1564 14 6 1.0390 -5.3342 -2.6713 15 7 0.3933 -6.4965 -2.0473 16 6 -0.1284 -7.4789 -2.8083 17 8 -0.6742 -8.4293 -2.2834 18 6 -0.0366 -7.3999 -4.2850 19 6 -0.9400 -8.1105 -5.0723 20 6 -0.8448 -8.0227 -6.4520 21 6 0.1579 -7.2355 -6.9969 22 6 0.3034 -7.1157 -8.4921 23 6 1.5458 -6.4000 -9.0258 24 6 0.1778 -5.7193 -9.1044 25 6 1.0251 -6.5602 -6.1532 26 7 0.9091 -6.6573 -4.8467 27 6 0.3244 -6.5733 -0.5819 28 6 -0.3577 -5.3058 -0.0533 29 1 -0.4850 0.8399 -0.0004 30 1 1.8385 -4.2345 0.9979 31 1 2.5598 -4.0339 -0.6594 32 1 -0.7168 -2.1423 -0.6593 33 1 -0.5298 -2.8674 0.9979 34 1 -0.6611 -4.0128 -2.5296 35 1 0.9167 -3.1863 -2.5030 36 1 0.9310 -5.3938 -3.7542 37 1 2.0967 -5.3186 -2.4077 38 1 -1.7059 -8.7184 -4.6137 39 1 -1.5333 -8.5588 -7.0885 40 1 -0.0815 -7.9555 -9.0706 41 1 2.2578 -6.0153 -8.2955 42 1 1.9787 -6.7688 -9.9557 43 1 -0.2894 -5.6405 -10.0861 44 1 -0.0105 -4.8872 -8.4259 45 1 1.8072 -5.9457 -6.5742 46 1 1.3318 -6.6443 -0.1719 47 1 -0.2530 -7.4494 -0.2864 48 1 -0.2942 -5.2845 1.0346 49 1 -1.4044 -5.3000 -0.3575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035844488.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:50 Heat of formation + Delta-G solvation = 100.834678 kcal Electronic energy + Delta-G solvation = -29819.641811 eV Core-core repulsion = 25942.935081 eV Total energy + Delta-G solvation = -3876.706730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15981 -39.83606 -38.58791 -37.37583 -35.71471 -33.06503 -32.37245 -31.57147 -30.58825 -30.19854 -26.95309 -25.52297 -24.90602 -24.33774 -23.28051 -22.99647 -22.68755 -21.52375 -20.96583 -20.02113 -18.09414 -17.46153 -16.79692 -16.65748 -16.14448 -15.77764 -15.34948 -15.11638 -15.04101 -14.81832 -14.54538 -14.11892 -13.93527 -13.83099 -13.68147 -13.33834 -13.03794 -12.90982 -12.34130 -12.18466 -12.11536 -12.00674 -11.90149 -11.56666 -11.41903 -11.02810 -10.97516 -10.86101 -10.81394 -10.75172 -10.42466 -10.27861 -10.21497 -10.00795 -9.65563 -9.48666 -9.27838 -9.17863 -8.99985 -8.72090 -8.32198 -6.79945 -5.71334 -3.02687 0.40679 0.91682 2.60026 3.02837 3.33807 3.40997 3.46023 3.47897 3.68489 3.88558 4.14380 4.36456 4.45147 4.49575 4.50052 4.57061 4.63807 4.94362 4.96458 5.12164 5.20741 5.21696 5.33436 5.39710 5.42770 5.47339 5.50792 5.55473 5.60227 5.68012 5.70921 5.74799 5.85245 5.88450 6.02372 6.05101 6.15194 6.27779 6.31493 6.41519 6.44423 6.64867 6.70985 6.75830 6.89958 6.93606 7.30422 7.41714 7.45409 7.57873 7.64330 8.04403 8.18302 9.10550 9.76622 10.68186 11.45650 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.002954 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.453906 B = 9475.722908 C =11349.199580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.127 3.873 11 C -0.109 4.109 12 C 0.173 3.827 13 C -0.097 4.097 14 C 0.079 3.921 15 N -0.580 5.580 16 C 0.567 3.433 17 O -0.546 6.546 18 C 0.080 3.920 19 C -0.108 4.108 20 C -0.076 4.076 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.174 4.174 24 C -0.166 4.166 25 C 0.091 3.909 26 N -0.439 5.439 27 C 0.112 3.888 28 C -0.116 4.116 29 H 0.252 0.748 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.163 0.837 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -16.925 -17.291 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.136 4.136 14 C -0.043 4.043 15 N -0.310 5.310 16 C 0.354 3.646 17 O -0.424 6.424 18 C -0.057 4.057 19 C -0.129 4.129 20 C -0.102 4.102 21 C -0.086 4.086 22 C -0.140 4.140 23 C -0.211 4.211 24 C -0.202 4.202 25 C -0.068 4.068 26 N -0.150 5.150 27 C -0.010 4.010 28 C -0.155 4.155 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.180 0.820 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.649 -16.609 -16.399 23.350 hybrid contribution -0.073 0.677 -0.275 0.735 sum -0.721 -15.931 -16.675 23.073 Atomic orbital electron populations 1.69820 1.04950 1.25130 1.56981 1.24752 0.95618 0.97361 1.02792 0.86169 0.78597 0.83732 0.77556 1.21618 1.21756 1.20792 1.19017 0.90196 0.82148 1.43345 0.90457 1.45962 1.02369 0.99175 1.85995 1.22582 0.94479 0.86486 0.96371 1.22402 0.97891 0.95487 0.95290 1.22229 0.88014 0.88480 0.96503 1.21528 1.00538 0.97339 0.94160 1.22897 0.96344 0.83427 1.01585 1.47993 1.55304 1.20880 1.06826 1.17887 0.78774 0.82813 0.85140 1.90752 1.45099 1.33300 1.73278 1.21217 0.93986 0.95829 0.94674 1.22065 0.99177 0.98055 0.93599 1.21403 0.97034 0.97208 0.94569 1.20329 0.95918 0.97342 0.95009 1.20976 1.04531 0.97477 0.91005 1.23103 0.91089 1.03595 1.03266 1.23082 1.00105 0.94550 1.02512 1.22855 0.97908 0.97651 0.88349 1.67697 1.20158 1.14634 1.12536 1.21697 1.01387 0.99373 0.78539 1.21816 0.99533 0.93793 1.00394 0.93784 0.95202 0.94146 0.91097 0.95847 0.92637 0.89610 0.85053 0.91440 0.83469 0.84084 0.86502 0.88005 0.88059 0.88110 0.88163 0.82042 0.91249 0.89451 0.90743 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 11.39 55.49 0.63 -26.82 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.17 10.70 -15.05 -0.16 -6.33 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.58 3.53 -179.82 -0.64 -16.22 16 10 C 0.13 2.60 7.72 -3.15 -0.02 2.57 16 11 C -0.11 -2.04 0.77 -154.42 -0.12 -2.16 16 12 C 0.17 4.09 6.64 -3.17 -0.02 4.07 16 13 C -0.10 -1.71 5.21 -26.72 -0.14 -1.84 16 14 C 0.08 1.19 5.87 -3.66 -0.02 1.17 16 15 N -0.58 -8.83 2.94 -173.64 -0.51 -9.34 16 16 C 0.57 8.80 7.60 -12.18 -0.09 8.71 16 17 O -0.55 -9.55 15.94 5.36 0.09 -9.47 16 18 C 0.08 1.06 6.42 -83.01 -0.53 0.52 16 19 C -0.11 -1.16 9.63 -39.05 -0.38 -1.54 16 20 C -0.08 -0.64 9.88 -39.31 -0.39 -1.02 16 21 C -0.08 -0.69 5.63 -104.36 -0.59 -1.28 16 22 C -0.12 -0.73 6.06 -91.78 -0.56 -1.28 16 23 C -0.17 -0.91 9.87 -26.73 -0.26 -1.18 16 24 C -0.17 -0.93 10.17 -26.74 -0.27 -1.20 16 25 C 0.09 0.88 10.47 -17.57 -0.18 0.69 16 26 N -0.44 -5.40 6.43 -9.80 -0.06 -5.46 16 27 C 0.11 1.65 6.31 -3.65 -0.02 1.62 16 28 C -0.12 -1.84 5.26 -26.72 -0.14 -1.98 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.04 0.80 7.41 -51.93 -0.38 0.41 16 32 H 0.07 1.86 7.12 -51.93 -0.37 1.50 16 33 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.70 8.01 -51.93 -0.42 1.28 16 36 H 0.13 1.88 3.97 -77.68 -0.31 1.57 16 37 H 0.07 1.03 7.49 -51.92 -0.39 0.64 16 38 H 0.15 1.48 7.81 -52.48 -0.41 1.07 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.53 6.20 -51.93 -0.32 0.20 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.16 1.22 6.03 -52.48 -0.32 0.90 16 46 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 47 H 0.09 1.28 6.98 -51.93 -0.36 0.92 16 48 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -33.06 387.24 -11.14 -44.21 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.46 Total: 0.83 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -4.00 Total: -0.81 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.58 Total: -57.84 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.06 -11.14 -44.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035844488.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.041 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds