Wall clock time and date at job start Wed Apr 1 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46909 * 300.00250 * 3 2 1 6 6 H 1.48508 * 109.46892 * 59.99755 * 3 2 1 7 7 C 1.38815 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.48159 * 126.40511 * 0.02562 * 9 7 2 11 11 C 1.55289 * 107.04550 * 184.92608 * 10 9 7 12 12 C 1.53739 * 101.84227 * 22.47226 * 11 10 9 13 13 H 1.09002 * 111.29867 * 79.84500 * 12 11 10 14 14 C 1.52240 * 114.75078 * 207.23982 * 12 11 10 15 15 N 1.47721 * 106.35756 * 169.60963 * 14 12 11 16 16 C 1.34772 * 119.68581 * 127.66661 * 15 14 12 17 17 O 1.21279 * 120.00223 * 355.06758 * 16 15 14 18 18 C 1.50705 * 120.00106 * 175.06772 * 16 15 14 19 19 C 1.50705 * 115.54771 * 293.82856 * 18 16 15 20 20 C 1.38222 * 119.61769 * 313.67151 * 19 18 16 21 21 C 1.38631 * 119.16260 * 179.71097 * 20 19 18 22 22 C 1.38682 * 118.41386 * 0.54988 * 21 20 19 23 23 C 1.38174 * 119.16474 * 359.73242 * 22 21 20 24 24 N 1.31854 * 119.61788 * 133.93701 * 19 18 16 25 25 C 1.52991 * 117.50281 * 148.15897 * 18 16 15 26 26 C 1.53001 * 117.49771 * 79.49544 * 18 16 15 27 27 C 1.46599 * 120.62640 * 307.93662 * 15 14 12 28 28 C 1.53960 * 110.58056 * 47.82505 * 27 15 14 29 29 C 1.45473 * 126.40700 * 180.02562 * 9 7 2 30 30 H 1.09002 * 109.27043 * 266.21163 * 29 9 7 31 31 H 0.97006 * 120.00011 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.92263 * 65.57211 * 10 9 7 33 33 H 1.09003 * 109.91934 * 304.27087 * 10 9 7 34 34 H 1.09007 * 110.94868 * 264.34389 * 11 10 9 35 35 H 1.08990 * 110.95824 * 140.61823 * 11 10 9 36 36 H 1.08998 * 110.07407 * 50.39668 * 14 12 11 37 37 H 1.09000 * 110.16017 * 288.86234 * 14 12 11 38 38 H 1.08006 * 120.42027 * 359.97438 * 20 19 18 39 39 H 1.08002 * 120.79242 * 180.25413 * 21 20 19 40 40 H 1.07998 * 120.41100 * 179.71110 * 22 21 20 41 41 H 1.08003 * 119.61716 * 180.02562 * 23 22 21 42 42 H 1.09011 * 117.49673 * 359.97438 * 25 18 16 43 43 H 1.08996 * 117.50492 * 145.01813 * 25 18 16 44 44 H 1.09002 * 117.49607 * 214.97920 * 26 18 16 45 45 H 1.08990 * 117.50003 * 359.97438 * 26 18 16 46 46 H 1.09004 * 109.25361 * 168.10555 * 27 15 14 47 47 H 1.08998 * 109.25597 * 287.54024 * 27 15 14 48 48 H 1.09001 * 109.88273 * 189.48353 * 28 27 15 49 49 H 1.09008 * 109.94446 * 68.43768 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5533 -0.0005 11 6 -0.4343 -4.0740 0.1274 12 6 0.8677 -4.5889 0.7626 13 1 0.8836 -4.4055 1.8369 14 6 1.2004 -6.0405 0.4466 15 7 2.5814 -6.2635 0.9212 16 6 2.8459 -7.2988 1.7426 17 8 1.9398 -7.9883 2.1603 18 6 4.2676 -7.5997 2.1420 19 6 5.1731 -8.0565 1.0273 20 6 4.7346 -9.0258 0.1448 21 6 5.5730 -9.4347 -0.8807 22 6 6.8312 -8.8589 -0.9737 23 6 7.2026 -7.8997 -0.0511 24 7 6.3764 -7.5307 0.9083 25 6 4.4996 -8.1981 3.5308 26 6 4.8864 -6.7441 3.2492 27 6 3.6659 -5.3660 0.5120 28 6 3.2469 -3.8951 0.6888 29 6 1.9077 -3.7212 0.0016 30 1 1.9902 -4.0785 -1.0249 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5625 -2.1741 -0.9340 33 1 -0.5809 -2.0209 0.8458 34 1 -0.5945 -4.5241 -0.8523 35 1 -1.2862 -4.2560 0.7824 36 1 1.1419 -6.2123 -0.6281 37 1 0.5133 -6.7058 0.9694 38 1 3.7496 -9.4561 0.2503 39 1 5.2557 -10.1871 -1.5875 40 1 7.5122 -9.1568 -1.7572 41 1 8.1806 -7.4462 -0.1169 42 1 3.6240 -8.3739 4.1558 43 1 5.3074 -8.9220 3.6384 44 1 5.9486 -6.5120 3.1716 45 1 4.2655 -5.9633 3.6884 46 1 4.5467 -5.5647 1.1227 47 1 3.9069 -5.5476 -0.5354 48 1 3.9874 -3.2408 0.2288 49 1 3.1527 -3.6602 1.7491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036716192.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:12 Heat of formation + Delta-G solvation = 65.917398 kcal Electronic energy + Delta-G solvation = -30766.956822 eV Core-core repulsion = 26888.735965 eV Total energy + Delta-G solvation = -3878.220857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12314 -39.88507 -38.47350 -36.52232 -35.35978 -32.67639 -32.64798 -31.56424 -31.30133 -29.66871 -28.19048 -25.64657 -24.73596 -23.83361 -23.65067 -22.53329 -22.25543 -21.82639 -20.06790 -19.69093 -18.78774 -17.68008 -16.65871 -16.41267 -16.25716 -15.97875 -15.50978 -15.16083 -15.00425 -14.63518 -14.26530 -14.15498 -13.89433 -13.79177 -13.49252 -13.23623 -13.02845 -12.73730 -12.57397 -12.37224 -12.05709 -11.67712 -11.65347 -11.49858 -11.40539 -10.95625 -10.88916 -10.82718 -10.76131 -10.67482 -10.13940 -10.12043 -10.06945 -9.89535 -9.74689 -9.65156 -9.60996 -9.44144 -9.12000 -8.62809 -8.50510 -6.83656 -5.71642 -3.04726 0.79902 1.01033 2.50267 2.94639 3.34283 3.39318 3.44771 3.47227 3.77152 3.90637 4.32558 4.43512 4.49137 4.59073 4.72342 4.76385 4.83633 4.98407 5.05475 5.14813 5.20383 5.28042 5.36198 5.42172 5.49029 5.53532 5.59452 5.62565 5.67791 5.74701 5.82476 5.85412 5.90663 5.93012 6.01508 6.03446 6.16310 6.20024 6.25536 6.36757 6.40777 6.50385 6.62136 6.64621 6.84556 7.07001 7.46979 7.55662 7.61833 7.71228 7.81185 8.18576 8.24245 9.19473 9.83029 10.51157 11.40965 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003228 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.901935 B = 8672.513170 C = 9388.941741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.123 4.123 13 H 0.080 0.920 14 C 0.125 3.875 15 N -0.596 5.596 16 C 0.555 3.445 17 O -0.541 6.541 18 C -0.121 4.121 19 C 0.175 3.825 20 C -0.158 4.158 21 C -0.071 4.071 22 C -0.177 4.177 23 C 0.104 3.896 24 N -0.475 5.475 25 C -0.130 4.130 26 C -0.138 4.138 27 C 0.111 3.889 28 C -0.127 4.127 29 C 0.169 3.831 30 H 0.018 0.982 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.802 -19.264 0.638 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.143 4.143 13 H 0.098 0.902 14 C 0.003 3.997 15 N -0.328 5.328 16 C 0.341 3.659 17 O -0.418 6.418 18 C -0.125 4.125 19 C 0.037 3.963 20 C -0.178 4.178 21 C -0.097 4.097 22 C -0.196 4.196 23 C -0.053 4.053 24 N -0.184 5.184 25 C -0.168 4.168 26 C -0.175 4.175 27 C -0.012 4.012 28 C -0.167 4.167 29 C 0.061 3.939 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.136 0.864 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.539 -18.717 1.406 22.033 hybrid contribution 0.221 0.349 -0.899 0.990 sum 11.761 -18.368 0.507 21.816 Atomic orbital electron populations 1.69952 1.04888 1.24893 1.57142 1.24789 0.95673 0.97616 1.02370 0.86084 0.78737 0.83965 0.77230 1.20512 1.21805 1.21799 1.19044 0.90386 0.82298 1.43550 0.90337 1.44217 1.01663 0.99468 1.86563 1.21526 0.83934 0.88273 1.00946 1.22719 0.95784 0.99713 0.99282 1.22617 0.97854 0.93194 1.00651 0.90191 1.21669 0.81547 0.97384 0.99078 1.48223 1.09947 1.27403 1.47204 1.19211 0.88247 0.80313 0.78142 1.90673 1.46425 1.50158 1.54580 1.19926 0.92821 1.09858 0.89936 1.19756 0.90703 0.92277 0.93547 1.21911 1.01491 0.98485 0.95924 1.21584 0.93413 0.98076 0.96627 1.22160 0.97467 0.98902 1.01101 1.22743 0.98681 0.93954 0.89944 1.67337 1.03295 1.25768 1.22009 1.23067 1.03543 0.96894 0.93302 1.23126 1.02813 0.94182 0.97422 1.21845 0.89144 0.90182 1.00063 1.21877 0.99348 0.93425 1.02001 1.20611 0.91114 0.87193 0.95030 0.96456 0.93828 0.94393 0.92698 0.92382 0.92031 0.91354 0.89164 0.84872 0.84696 0.84706 0.82461 0.87226 0.88047 0.86407 0.87858 0.89274 0.92427 0.90599 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.44 55.49 0.58 -26.36 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.11 9.88 -15.06 -0.15 -6.26 16 8 H 0.08 2.06 7.21 -52.49 -0.38 1.68 16 9 N -0.59 -14.86 3.35 -163.09 -0.55 -15.41 16 10 C 0.18 4.28 5.45 -1.92 -0.01 4.27 16 11 C -0.14 -2.54 6.54 -25.13 -0.16 -2.71 16 12 C -0.12 -2.21 2.85 -89.37 -0.26 -2.47 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.12 1.95 5.97 -3.76 -0.02 1.93 16 15 N -0.60 -8.99 3.00 -172.48 -0.52 -9.51 16 16 C 0.55 8.34 6.33 -10.99 -0.07 8.27 16 17 O -0.54 -9.51 16.07 5.56 0.09 -9.42 16 18 C -0.12 -1.50 1.13 -156.81 -0.18 -1.68 16 19 C 0.17 2.04 5.12 -82.59 -0.42 1.62 16 20 C -0.16 -1.71 9.40 -39.44 -0.37 -2.08 16 21 C -0.07 -0.60 10.18 -39.27 -0.40 -1.00 16 22 C -0.18 -1.35 10.11 -39.44 -0.40 -1.75 16 23 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 24 N -0.48 -5.29 9.27 -9.48 -0.09 -5.38 16 25 C -0.13 -1.39 9.76 -26.70 -0.26 -1.65 16 26 C -0.14 -1.52 8.63 -26.69 -0.23 -1.75 16 27 C 0.11 1.62 5.73 -3.49 -0.02 1.60 16 28 C -0.13 -2.23 5.48 -26.98 -0.15 -2.38 16 29 C 0.17 3.40 2.57 -67.98 -0.17 3.23 16 30 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.05 1.47 7.21 -51.93 -0.37 1.10 16 34 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.09 1.43 6.98 -51.93 -0.36 1.07 16 38 H 0.13 1.47 7.85 -52.48 -0.41 1.05 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 42 H 0.11 1.21 8.01 -51.92 -0.42 0.80 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.12 1.22 7.59 -51.93 -0.39 0.83 16 45 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.09 1.21 4.97 -51.93 -0.26 0.96 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 1.35 7.62 -51.93 -0.40 0.96 16 49 H 0.07 1.25 8.13 -51.92 -0.42 0.83 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -31.98 385.45 -10.85 -42.83 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.59 Total: 2.92 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.57 Total: -2.42 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.57 Total: -56.65 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.98 -10.85 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036716192.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.746 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds