Wall clock time and date at job start Wed Apr 1 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00253 * 2 1 4 4 H 1.48495 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46848 * 300.00106 * 3 2 1 6 6 H 1.48502 * 109.46985 * 60.00026 * 3 2 1 7 7 C 1.38808 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.40556 * 0.02702 * 9 7 2 11 11 C 1.55293 * 107.04262 * 175.05375 * 10 9 7 12 12 C 1.53744 * 101.84158 * 337.52045 * 11 10 9 13 13 H 1.09007 * 111.98045 * 280.77202 * 12 11 10 14 14 C 1.52235 * 114.75182 * 152.76990 * 12 11 10 15 15 N 1.47716 * 106.36472 * 190.40457 * 14 12 11 16 16 C 1.34779 * 119.68854 * 232.04243 * 15 14 12 17 17 O 1.21287 * 119.99459 * 5.07226 * 16 15 14 18 18 C 1.50693 * 120.00041 * 185.07360 * 16 15 14 19 19 C 1.50702 * 115.54946 * 65.77537 * 18 16 15 20 20 C 1.38231 * 119.62012 * 10.02189 * 19 18 16 21 21 C 1.38622 * 119.16475 * 180.02562 * 20 19 18 22 22 C 1.38674 * 118.41693 * 0.02562 * 21 20 19 23 23 C 1.38179 * 119.16516 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61871 * 190.04990 * 19 18 16 25 25 C 1.53007 * 117.49894 * 211.43529 * 18 16 15 26 26 C 1.52995 * 117.50272 * 280.09982 * 18 16 15 27 27 C 1.46600 * 120.62450 * 52.31711 * 15 14 12 28 28 C 1.54341 * 110.36508 * 311.83611 * 27 15 14 29 29 C 1.45471 * 126.40429 * 180.02562 * 9 7 2 30 30 H 1.09003 * 109.26980 * 93.81550 * 29 9 7 31 31 H 0.97006 * 119.99620 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.92061 * 294.40502 * 10 9 7 33 33 H 1.09006 * 109.92001 * 55.50644 * 10 9 7 34 34 H 1.08996 * 110.95455 * 219.38444 * 11 10 9 35 35 H 1.08995 * 110.95461 * 95.65727 * 11 10 9 36 36 H 1.09002 * 110.06639 * 71.19273 * 14 12 11 37 37 H 1.08998 * 110.06973 * 309.61593 * 14 12 11 38 38 H 1.08000 * 120.41703 * 0.03328 * 20 19 18 39 39 H 1.07999 * 120.79161 * 179.72944 * 21 20 19 40 40 H 1.08003 * 120.41572 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.61376 * 179.97438 * 23 22 21 42 42 H 1.08997 * 117.49981 * 215.00626 * 25 18 16 43 43 H 1.08999 * 117.49932 * 0.03277 * 25 18 16 44 44 H 1.08996 * 117.49919 * 359.97438 * 26 18 16 45 45 H 1.08997 * 117.50078 * 144.97483 * 26 18 16 46 46 H 1.08991 * 109.25712 * 72.20245 * 27 15 14 47 47 H 1.09004 * 109.24865 * 191.63539 * 27 15 14 48 48 H 1.08995 * 110.03734 * 291.80915 * 28 27 15 49 49 H 1.08998 * 109.80843 * 170.67840 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1469 -2.5533 -0.0006 11 6 -0.4342 -4.0741 -0.1286 12 6 0.8683 -4.5889 -0.7629 13 1 0.9012 -4.4015 -1.8362 14 6 1.2008 -6.0405 -0.4468 15 7 2.5822 -6.2635 -0.9201 16 6 2.8485 -7.3022 -1.7366 17 8 1.9433 -7.9936 -2.1533 18 6 4.2710 -7.6046 -2.1317 19 6 5.1765 -8.0477 -1.0116 20 6 4.6365 -8.3509 0.2242 21 6 5.4782 -8.7570 1.2481 22 6 6.8379 -8.8429 0.9896 23 6 7.3054 -8.5226 -0.2706 24 7 6.4749 -8.1412 -1.2215 25 6 4.5052 -8.2177 -3.5139 26 6 4.8890 -6.7599 -3.2476 27 6 3.6673 -5.3693 -0.5053 28 6 3.2476 -3.8952 -0.6870 29 6 1.9077 -3.7211 -0.0005 30 1 1.9890 -4.0782 1.0261 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5632 -2.1739 0.9326 33 1 -0.5807 -2.0180 -0.8452 34 1 -1.2856 -4.2561 -0.7843 35 1 -0.5952 -4.5241 0.8510 36 1 0.5138 -6.7044 -0.9716 37 1 1.1413 -6.2124 0.6279 38 1 3.5722 -8.2725 0.3900 39 1 5.0850 -8.9961 2.2251 40 1 7.5230 -9.1554 1.7639 41 1 8.3631 -8.5865 -0.4797 42 1 5.3142 -8.9413 -3.6129 43 1 3.6304 -8.4018 -4.1376 44 1 4.2666 -5.9857 -3.6963 45 1 5.9505 -6.5242 -3.1714 46 1 3.9032 -5.5525 0.5429 47 1 4.5502 -5.5699 -1.1123 48 1 3.1541 -3.6615 -1.7474 49 1 3.9876 -3.2409 -0.2261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036716193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:15 Heat of formation + Delta-G solvation = 66.552433 kcal Electronic energy + Delta-G solvation = -30821.149944 eV Core-core repulsion = 26942.956625 eV Total energy + Delta-G solvation = -3878.193320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20151 -39.87209 -38.48920 -36.53707 -35.39873 -32.77672 -32.55891 -31.58904 -31.32342 -29.67413 -28.20970 -25.69866 -24.76202 -23.80541 -23.53000 -22.67190 -22.29469 -21.79613 -20.09043 -19.71643 -18.79235 -17.74857 -16.69419 -16.47028 -16.23070 -15.91691 -15.48392 -15.13337 -15.07655 -14.58559 -14.27680 -14.21038 -13.92781 -13.81759 -13.49151 -13.21365 -13.04810 -12.74710 -12.61364 -12.41249 -12.06113 -11.69103 -11.64931 -11.52887 -11.42975 -11.06565 -10.90884 -10.84632 -10.78729 -10.71851 -10.16589 -10.11741 -10.07343 -9.91451 -9.75963 -9.65687 -9.62861 -9.46261 -9.05396 -8.64400 -8.54323 -6.85432 -5.73397 -3.06593 0.80064 1.01486 2.47517 2.91602 3.30592 3.37983 3.43370 3.45900 3.82605 3.95801 4.21385 4.42041 4.47408 4.58811 4.74328 4.78156 4.83941 4.97721 5.03772 5.08360 5.19256 5.24519 5.32888 5.41218 5.50365 5.52903 5.56691 5.61482 5.64108 5.75200 5.79176 5.85670 5.88060 5.94654 6.00411 6.02330 6.12913 6.16788 6.22241 6.33961 6.40759 6.47352 6.59887 6.62617 6.81593 7.04694 7.42460 7.53988 7.59990 7.69997 7.79801 8.15499 8.22688 9.17671 9.81291 10.49205 11.39138 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.003218 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.490903 B = 8697.925565 C = 9344.848743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.080 0.920 14 C 0.125 3.875 15 N -0.598 5.598 16 C 0.553 3.447 17 O -0.538 6.538 18 C -0.124 4.124 19 C 0.178 3.822 20 C -0.162 4.162 21 C -0.068 4.068 22 C -0.179 4.179 23 C 0.105 3.895 24 N -0.481 5.481 25 C -0.123 4.123 26 C -0.137 4.137 27 C 0.113 3.887 28 C -0.128 4.128 29 C 0.168 3.832 30 H 0.019 0.981 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.550 -18.325 -0.134 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.143 4.143 13 H 0.098 0.902 14 C 0.003 3.997 15 N -0.330 5.330 16 C 0.340 3.660 17 O -0.415 6.415 18 C -0.128 4.128 19 C 0.041 3.959 20 C -0.181 4.181 21 C -0.094 4.094 22 C -0.199 4.199 23 C -0.052 4.052 24 N -0.190 5.190 25 C -0.161 4.161 26 C -0.175 4.175 27 C -0.011 4.011 28 C -0.167 4.167 29 C 0.060 3.940 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.133 0.867 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.349 -18.210 -1.133 21.487 hybrid contribution 0.172 0.823 1.115 1.396 sum 11.520 -17.387 -0.018 20.857 Atomic orbital electron populations 1.69949 1.04889 1.24912 1.57076 1.24787 0.95670 0.97621 1.02328 0.86089 0.78723 0.83976 0.77248 1.20532 1.21784 1.21792 1.19036 0.90367 0.82302 1.43639 0.90356 1.44218 1.01666 0.99461 1.86568 1.21533 0.83918 0.88297 1.00991 1.22698 0.95755 0.99661 0.99275 1.22630 0.97852 0.93166 1.00695 0.90166 1.21675 0.81478 0.97446 0.99098 1.48258 1.09875 1.27388 1.47526 1.19220 0.88372 0.80299 0.78133 1.90683 1.46530 1.50015 1.54269 1.19987 0.92615 1.09998 0.90188 1.19758 0.89806 0.94606 0.91757 1.21930 1.01537 1.00951 0.93724 1.21580 0.93436 0.95179 0.99196 1.22141 0.96343 1.02520 0.98872 1.22702 0.99455 0.94216 0.88860 1.67258 1.03241 1.13541 1.34928 1.23046 1.03425 0.96592 0.93024 1.23159 1.02422 0.94566 0.97323 1.21903 0.88919 0.90290 0.99954 1.21958 0.99406 0.93313 1.02034 1.20635 0.91078 0.87243 0.95055 0.96422 0.93810 0.94413 0.92665 0.92029 0.92333 0.89121 0.91262 0.84999 0.84633 0.84702 0.82533 0.87547 0.87445 0.87836 0.86682 0.92006 0.90051 0.91322 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.43 55.49 0.58 -26.15 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.06 9.88 -15.06 -0.15 -6.21 16 8 H 0.08 2.03 7.21 -52.49 -0.38 1.65 16 9 N -0.59 -14.64 3.35 -163.05 -0.55 -15.18 16 10 C 0.18 4.21 5.46 -1.91 -0.01 4.20 16 11 C -0.13 -2.47 6.54 -25.13 -0.16 -2.63 16 12 C -0.12 -2.16 2.86 -89.35 -0.26 -2.41 16 13 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 14 C 0.12 1.86 5.97 -3.77 -0.02 1.84 16 15 N -0.60 -8.57 2.67 -172.25 -0.46 -9.03 16 16 C 0.55 8.16 5.45 -10.99 -0.06 8.10 16 17 O -0.54 -9.46 16.06 5.55 0.09 -9.37 16 18 C -0.12 -1.54 1.30 -156.81 -0.20 -1.74 16 19 C 0.18 2.11 5.41 -82.58 -0.45 1.67 16 20 C -0.16 -1.80 8.63 -39.44 -0.34 -2.14 16 21 C -0.07 -0.60 10.18 -39.28 -0.40 -1.00 16 22 C -0.18 -1.39 10.11 -39.44 -0.40 -1.79 16 23 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 24 N -0.48 -5.34 9.46 -9.47 -0.09 -5.43 16 25 C -0.12 -1.37 9.65 -26.69 -0.26 -1.63 16 26 C -0.14 -1.50 8.68 -26.69 -0.23 -1.73 16 27 C 0.11 1.54 5.17 -3.28 -0.02 1.53 16 28 C -0.13 -2.16 5.50 -26.76 -0.15 -2.31 16 29 C 0.17 3.30 2.57 -67.95 -0.17 3.12 16 30 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 33 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.13 1.56 6.71 -52.49 -0.35 1.21 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 41 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.11 1.23 8.00 -51.93 -0.42 0.81 16 44 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.11 1.19 7.78 -51.93 -0.40 0.78 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 1.04 5.06 -51.93 -0.26 0.78 16 48 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 49 H 0.08 1.30 7.62 -51.93 -0.40 0.91 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -31.75 382.59 -10.79 -42.55 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.54 Total: 2.81 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -3.57 Total: -2.74 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.52 Total: -55.79 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.75 -10.79 -42.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036716193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.100 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds