Wall clock time and date at job start Wed Apr 1 2020 01:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99961 * 2 1 4 4 H 1.48502 * 109.47205 * 240.00017 * 3 2 1 5 5 H 1.48500 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46961 * 120.00481 * 3 2 1 7 7 C 1.38817 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00232 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99536 * 359.97438 * 7 2 1 10 10 C 1.47655 * 126.20354 * 354.85170 * 9 7 2 11 11 C 1.54650 * 106.94146 * 178.34625 * 10 9 7 12 12 C 1.56270 * 102.20326 * 335.91851 * 11 10 9 13 13 H 1.09001 * 112.60931 * 158.91186 * 12 11 10 14 14 C 1.51873 * 106.81961 * 282.54766 * 12 11 10 15 15 N 1.43521 * 116.04084 * 130.06622 * 14 12 11 16 16 C 1.34778 * 115.76065 * 180.56517 * 15 14 12 17 17 O 1.21284 * 120.00189 * 5.28300 * 16 15 14 18 18 C 1.50698 * 120.00133 * 185.28359 * 16 15 14 19 19 C 1.50704 * 115.55355 * 67.96445 * 18 16 15 20 20 C 1.38227 * 119.61300 * 10.83922 * 19 18 16 21 21 C 1.38634 * 119.15767 * 180.27649 * 20 19 18 22 22 C 1.38671 * 118.41709 * 359.42893 * 21 20 19 23 23 C 1.38183 * 119.16474 * 0.56855 * 22 21 20 24 24 N 1.31845 * 119.61985 * 190.80860 * 19 18 16 25 25 C 1.53003 * 117.49734 * 213.64131 * 18 16 15 26 26 C 1.53008 * 117.49794 * 282.29709 * 18 16 15 27 27 C 1.44225 * 128.47876 * 0.85266 * 15 14 12 28 28 C 1.52193 * 112.63914 * 7.02771 * 27 15 14 29 29 C 1.48374 * 125.93285 * 174.70472 * 9 7 2 30 30 H 1.08996 * 108.86743 * 91.05070 * 29 9 7 31 31 H 0.96999 * 119.99541 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.96848 * 58.97723 * 10 9 7 33 33 H 1.08997 * 110.00077 * 297.73179 * 10 9 7 34 34 H 1.08995 * 110.85505 * 217.74123 * 11 10 9 35 35 H 1.08996 * 111.03125 * 94.17243 * 11 10 9 36 36 H 1.09003 * 108.16484 * 8.36022 * 14 12 11 37 37 H 1.08999 * 108.16558 * 251.77139 * 14 12 11 38 38 H 1.08000 * 120.42154 * 359.97438 * 20 19 18 39 39 H 1.07996 * 120.78851 * 179.72662 * 21 20 19 40 40 H 1.08005 * 120.41604 * 180.26303 * 22 21 20 41 41 H 1.07997 * 119.61362 * 179.71883 * 23 22 21 42 42 H 1.09004 * 117.49409 * 214.99639 * 25 18 16 43 43 H 1.08990 * 117.50191 * 0.02562 * 25 18 16 44 44 H 1.08994 * 117.49596 * 359.97438 * 26 18 16 45 45 H 1.08997 * 117.49549 * 144.96897 * 26 18 16 46 46 H 1.09000 * 108.82348 * 126.75453 * 27 15 14 47 47 H 1.08993 * 108.82599 * 245.07360 * 27 15 14 48 48 H 1.08996 * 108.53738 * 202.99691 * 28 27 15 49 49 H 1.08997 * 109.98776 * 83.85543 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1382 -2.5499 0.1069 11 6 -0.4317 -4.0657 0.0184 12 6 0.8195 -4.6001 -0.7503 13 1 0.9815 -5.6670 -0.5968 14 6 0.6157 -4.2549 -2.2152 15 7 1.7144 -3.6011 -2.8672 16 6 1.5231 -3.2867 -4.1638 17 8 0.4406 -3.4707 -4.6791 18 6 2.6541 -2.7067 -4.9734 19 6 3.8031 -3.6422 -5.2484 20 6 3.6712 -4.9884 -4.9635 21 6 4.7362 -5.8395 -5.2148 22 6 5.8949 -5.3044 -5.7570 23 6 5.9535 -3.9483 -6.0157 24 7 4.9223 -3.1674 -5.7586 25 6 2.2967 -1.6886 -6.0581 26 6 2.9818 -1.2261 -4.7698 27 6 2.9985 -3.2414 -2.3180 28 6 3.2064 -3.7831 -0.9110 29 6 1.9259 -3.7403 -0.1119 30 1 2.1342 -4.1171 0.8894 31 1 -0.4849 0.8401 0.0004 32 1 -0.6317 -2.0268 -0.7122 33 1 -0.4875 -2.1584 1.0623 34 1 -1.3440 -4.2519 -0.5482 35 1 -0.4961 -4.5103 1.0115 36 1 -0.2591 -3.6094 -2.2937 37 1 0.4004 -5.1772 -2.7549 38 1 2.7518 -5.3714 -4.5457 39 1 4.6634 -6.8950 -4.9981 40 1 6.7428 -5.9388 -5.9697 41 1 6.8540 -3.5231 -6.4336 42 1 2.8928 -1.6955 -6.9707 43 1 1.2438 -1.4380 -6.1859 44 1 2.3791 -0.6715 -4.0506 45 1 4.0285 -0.9289 -4.8343 46 1 3.7813 -3.6517 -2.9559 47 1 3.0864 -2.1550 -2.3113 48 1 3.9571 -3.1709 -0.4113 49 1 3.5618 -4.8125 -0.9568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036716194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:18 Heat of formation + Delta-G solvation = 72.131059 kcal Electronic energy + Delta-G solvation = -32005.716588 eV Core-core repulsion = 28127.765175 eV Total energy + Delta-G solvation = -3877.951412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.11990 -39.81250 -38.32706 -36.25976 -35.00625 -32.86802 -32.46542 -31.83100 -31.17486 -29.47219 -27.87868 -25.69211 -24.78891 -23.78400 -23.50917 -22.77351 -22.15554 -21.78299 -20.04524 -19.13609 -17.94661 -17.46445 -16.42726 -16.38363 -16.26899 -15.69003 -15.65761 -15.17539 -14.84852 -14.59486 -14.27169 -13.97700 -13.85897 -13.64446 -13.40345 -13.16818 -12.86294 -12.59256 -12.39588 -12.07386 -11.89203 -11.59460 -11.45954 -11.31340 -11.20891 -10.94764 -10.79826 -10.72653 -10.67125 -10.54009 -10.19531 -9.96804 -9.92947 -9.83641 -9.72079 -9.62969 -9.54832 -9.31733 -8.84569 -8.59789 -7.99994 -6.81599 -5.69138 -3.02634 0.95825 1.15888 2.83042 3.33890 3.39119 3.43981 3.45946 3.53543 4.07555 4.21291 4.45633 4.47911 4.71019 4.75966 4.95799 4.97017 5.08451 5.10123 5.17201 5.22364 5.28407 5.37646 5.45983 5.52905 5.56173 5.58741 5.72941 5.83869 5.86285 5.90114 5.98118 6.01048 6.07230 6.09344 6.14937 6.24487 6.30966 6.34832 6.36549 6.49051 6.49827 6.56757 6.65826 6.73660 6.87500 7.21150 7.50841 7.63907 7.74840 7.82960 7.87763 8.24523 8.55633 9.20723 9.82088 10.51126 11.42010 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.004809 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.886962 B = 5821.105942 C = 6677.272498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.221 4.221 8 H 0.075 0.925 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.142 4.142 12 C -0.112 4.112 13 H 0.079 0.921 14 C 0.144 3.856 15 N -0.565 5.565 16 C 0.542 3.458 17 O -0.541 6.541 18 C -0.124 4.124 19 C 0.187 3.813 20 C -0.163 4.163 21 C -0.069 4.069 22 C -0.183 4.183 23 C 0.105 3.895 24 N -0.481 5.481 25 C -0.126 4.126 26 C -0.133 4.133 27 C 0.129 3.871 28 C -0.122 4.122 29 C 0.166 3.834 30 H 0.027 0.973 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.050 0.950 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 -11.627 -9.068 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.131 4.131 13 H 0.098 0.902 14 C 0.021 3.979 15 N -0.294 5.294 16 C 0.328 3.672 17 O -0.418 6.418 18 C -0.128 4.128 19 C 0.050 3.950 20 C -0.182 4.182 21 C -0.095 4.095 22 C -0.203 4.203 23 C -0.053 4.053 24 N -0.190 5.190 25 C -0.164 4.164 26 C -0.170 4.170 27 C 0.006 3.994 28 C -0.161 4.161 29 C 0.059 3.941 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.973 -10.609 -9.405 16.778 hybrid contribution 0.501 -0.095 0.387 0.640 sum 9.474 -10.703 -9.018 16.901 Atomic orbital electron populations 1.69925 1.04815 1.24994 1.56745 1.24754 0.95567 0.97345 1.02435 0.86347 0.78591 0.83838 0.77907 1.21087 1.21685 1.21329 1.18839 0.90125 0.82193 1.43798 0.90735 1.44738 1.01812 0.99215 1.85990 1.21307 0.84434 0.88308 1.00666 1.23313 0.96020 0.99914 0.98788 1.22416 0.98548 0.98530 0.93647 0.90248 1.20317 0.88939 0.96094 0.92543 1.46215 1.15545 1.57707 1.09944 1.19218 0.87553 0.78164 0.82251 1.90659 1.25862 1.53840 1.71468 1.19997 0.94974 0.91917 1.05945 1.19786 0.91285 0.90841 0.93084 1.21919 1.00366 0.94089 1.01873 1.21540 0.92544 1.00220 0.95220 1.22100 0.99151 0.97042 1.01996 1.22699 0.96410 0.90366 0.95784 1.67284 0.99697 1.39876 1.12121 1.23016 1.02256 0.98052 0.93036 1.23166 1.03103 0.91009 0.99748 1.20828 0.82785 1.01235 0.94586 1.21265 0.99694 1.00057 0.95088 1.20562 0.90699 0.87684 0.95193 0.95574 0.93794 0.92650 0.94766 0.91940 0.92348 0.91215 0.93571 0.85055 0.84794 0.84856 0.82655 0.87827 0.87570 0.87282 0.86942 0.93186 0.90409 0.90729 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 10.43 55.49 0.58 -25.82 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -5.73 8.85 -15.06 -0.13 -5.86 16 8 H 0.07 1.86 7.08 -52.49 -0.37 1.49 16 9 N -0.59 -13.96 3.08 -162.86 -0.50 -14.46 16 10 C 0.18 4.17 4.85 -2.54 -0.01 4.16 16 11 C -0.14 -2.58 6.15 -24.11 -0.15 -2.72 16 12 C -0.11 -1.89 3.75 -88.92 -0.33 -2.22 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.14 2.61 4.62 -6.19 -0.03 2.58 16 15 N -0.56 -10.24 3.04 -178.97 -0.54 -10.78 16 16 C 0.54 10.14 5.21 -10.99 -0.06 10.08 16 17 O -0.54 -11.58 16.34 5.55 0.09 -11.49 16 18 C -0.12 -2.00 1.44 -156.81 -0.23 -2.22 16 19 C 0.19 2.70 4.98 -82.59 -0.41 2.29 16 20 C -0.16 -2.13 8.12 -39.44 -0.32 -2.45 16 21 C -0.07 -0.71 10.18 -39.28 -0.40 -1.11 16 22 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 23 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 24 N -0.48 -6.46 9.45 -9.47 -0.09 -6.55 16 25 C -0.13 -1.87 9.66 -26.69 -0.26 -2.13 16 26 C -0.13 -2.08 8.61 -26.69 -0.23 -2.31 16 27 C 0.13 2.21 4.66 -5.66 -0.03 2.19 16 28 C -0.12 -2.04 5.22 -28.15 -0.15 -2.19 16 29 C 0.17 3.16 2.98 -67.39 -0.20 2.96 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.49 6.85 -51.93 -0.36 1.13 16 33 H 0.03 0.89 7.84 -51.93 -0.41 0.49 16 34 H 0.06 1.06 7.81 -51.93 -0.41 0.65 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.48 6.49 -51.93 -0.34 1.14 16 37 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.13 1.82 6.82 -52.49 -0.36 1.47 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.11 1.64 8.04 -51.93 -0.42 1.23 16 44 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 45 H 0.11 1.64 7.76 -51.93 -0.40 1.24 16 46 H 0.05 0.79 4.87 -51.93 -0.25 0.53 16 47 H 0.08 1.54 6.54 -51.93 -0.34 1.20 16 48 H 0.07 1.27 7.49 -51.93 -0.39 0.88 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -31.17 376.32 -10.84 -42.00 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.40 Total: 5.16 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.62 Total: -0.34 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.56 Total: -57.61 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.17 -10.84 -42.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036716194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.136 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds