Wall clock time and date at job start Wed Apr 1 2020 00:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48505 * 109.47352 * 270.00246 * 3 2 1 5 5 H 1.48501 * 109.47430 * 30.00108 * 3 2 1 6 6 H 1.48502 * 109.47437 * 150.00181 * 3 2 1 7 7 C 1.38813 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.48150 * 126.40418 * 359.97438 * 9 7 2 11 11 C 1.55286 * 107.04420 * 175.11151 * 10 9 7 12 12 C 1.53748 * 101.83919 * 337.51848 * 11 10 9 13 13 H 1.09001 * 111.30635 * 280.15689 * 12 11 10 14 14 C 1.52243 * 114.74250 * 152.75929 * 12 11 10 15 15 N 1.47717 * 106.36118 * 190.41975 * 14 12 11 16 16 C 1.34777 * 119.68411 * 232.07730 * 15 14 12 17 17 O 1.21558 * 120.00000 * 355.97627 * 16 15 14 18 18 C 1.47845 * 120.00204 * 175.97235 * 16 15 14 19 19 C 1.40022 * 120.55418 * 54.21342 * 18 16 15 20 20 C 1.38361 * 118.28711 * 179.97438 * 19 18 16 21 21 C 1.38358 * 119.30172 * 359.97438 * 20 19 18 22 22 N 1.31921 * 121.07722 * 359.97438 * 21 20 19 23 23 C 1.31697 * 121.88298 * 359.76776 * 22 21 20 24 24 C 1.50699 * 119.71942 * 180.24426 * 23 22 21 25 25 C 1.53006 * 117.49807 * 13.64495 * 24 23 22 26 26 C 1.53007 * 117.50044 * 304.98519 * 24 23 22 27 27 C 1.46595 * 120.63527 * 52.05674 * 15 14 12 28 28 C 1.53960 * 110.57551 * 312.17705 * 27 15 14 29 29 C 1.45468 * 126.40208 * 180.02562 * 9 7 2 30 30 H 1.09001 * 109.26317 * 93.76620 * 29 9 7 31 31 H 0.96999 * 120.00054 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.92315 * 55.76425 * 10 9 7 33 33 H 1.09002 * 109.92144 * 294.46053 * 10 9 7 34 34 H 1.09005 * 110.95744 * 219.38605 * 11 10 9 35 35 H 1.08997 * 110.95907 * 95.65563 * 11 10 9 36 36 H 1.08999 * 110.07006 * 71.20787 * 14 12 11 37 37 H 1.09000 * 110.07183 * 309.62820 * 14 12 11 38 38 H 1.07995 * 120.85969 * 359.94995 * 19 18 16 39 39 H 1.07995 * 120.34960 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.45793 * 180.02562 * 21 20 19 41 41 H 1.09004 * 115.55252 * 159.31052 * 24 23 22 42 42 H 1.09002 * 117.49486 * 359.97438 * 25 24 23 43 43 H 1.08999 * 117.50013 * 145.02006 * 25 24 23 44 44 H 1.08999 * 117.49357 * 214.97739 * 26 24 23 45 45 H 1.08997 * 117.49637 * 359.97266 * 26 24 23 46 46 H 1.08994 * 109.25872 * 72.46104 * 27 15 14 47 47 H 1.09004 * 109.25691 * 191.89866 * 27 15 14 48 48 H 1.09004 * 109.88088 * 170.51329 * 28 27 15 49 49 H 1.08998 * 109.88222 * 291.59311 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1466 -2.5534 0.0005 11 6 -0.4340 -4.0741 -0.1264 12 6 0.8680 -4.5892 -0.7614 13 1 0.8840 -4.4065 -1.8359 14 6 1.2008 -6.0407 -0.4445 15 7 2.5820 -6.2639 -0.9183 16 6 2.8478 -7.3028 -1.7348 17 8 1.9687 -8.0927 -2.0191 18 6 4.2085 -7.4815 -2.2846 19 6 5.3188 -7.5362 -1.4332 20 6 6.5705 -7.7053 -1.9981 21 6 6.6839 -7.8145 -3.3727 22 7 5.6196 -7.7605 -4.1502 23 6 4.4071 -7.6058 -3.6600 24 6 3.2247 -7.5560 -4.5930 25 6 3.4466 -8.0041 -6.0391 26 6 3.2557 -6.5195 -5.7181 27 6 3.6663 -5.3661 -0.5093 28 6 3.2473 -3.8954 -0.6874 29 6 1.9080 -3.7211 -0.0005 30 1 1.9900 -4.0777 1.0262 31 1 -0.4850 0.8400 0.0004 32 1 -0.5808 -2.0215 -0.8462 33 1 -0.5623 -2.1735 0.9338 34 1 -1.2859 -4.2566 -0.7816 35 1 -0.5943 -4.5238 0.8534 36 1 0.5136 -6.7050 -0.9684 37 1 1.1419 -6.2118 0.6304 38 1 5.2013 -7.4481 -0.3633 39 1 7.4496 -7.7516 -1.3726 40 1 7.6597 -7.9471 -3.8162 41 1 2.2586 -7.7783 -4.1399 42 1 4.4479 -8.3344 -6.3156 43 1 2.6263 -8.5207 -6.5374 44 1 2.3098 -6.0602 -6.0053 45 1 4.1311 -5.8734 -5.7831 46 1 3.9070 -5.5470 0.5382 47 1 4.5473 -5.5652 -1.1196 48 1 3.9876 -3.2407 -0.2275 49 1 3.1532 -3.6626 -1.7480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036761383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:34 Heat of formation + Delta-G solvation = 64.959082 kcal Electronic energy + Delta-G solvation = -30617.259627 eV Core-core repulsion = 26738.997215 eV Total energy + Delta-G solvation = -3878.262413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17734 -39.71981 -38.16324 -37.01406 -35.44977 -33.20367 -32.40770 -31.62585 -31.43484 -29.56584 -28.15414 -25.42810 -24.85396 -24.53245 -23.05980 -22.45060 -22.39206 -20.96065 -20.26097 -19.97613 -19.24137 -17.45469 -17.27965 -16.52465 -16.31122 -16.07837 -15.40827 -15.07882 -14.87615 -14.58431 -14.36808 -14.15886 -13.92020 -13.84327 -13.51556 -13.22042 -13.11387 -12.76436 -12.59358 -12.47948 -11.84006 -11.70248 -11.58589 -11.51072 -11.45938 -11.00124 -10.86786 -10.83761 -10.76759 -10.56044 -10.27138 -10.18381 -10.05631 -9.99971 -9.86835 -9.65294 -9.56266 -9.47203 -9.00418 -8.65508 -8.59199 -6.87157 -5.74656 -3.08039 0.58076 0.91416 2.56610 2.94771 3.35131 3.37200 3.42103 3.44193 3.89007 3.99894 4.23724 4.40305 4.46257 4.52343 4.77521 4.89382 4.94629 4.98256 5.00283 5.05250 5.13240 5.24126 5.29089 5.40067 5.48242 5.52429 5.55871 5.59960 5.72919 5.75706 5.77959 5.81245 5.84227 5.97299 6.07685 6.10381 6.13009 6.13836 6.18754 6.28801 6.35116 6.43975 6.57449 6.59476 6.77636 7.01978 7.35152 7.52022 7.58458 7.68219 7.77926 8.08051 8.21152 9.16156 9.79755 10.47596 11.37820 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.003208 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.418308 B = 8727.321947 C = 9119.531936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.596 5.596 16 C 0.565 3.435 17 O -0.537 6.537 18 C -0.169 4.169 19 C -0.043 4.043 20 C -0.185 4.185 21 C 0.120 3.880 22 N -0.485 5.485 23 C 0.211 3.789 24 C -0.133 4.133 25 C -0.154 4.154 26 C -0.156 4.156 27 C 0.105 3.895 28 C -0.129 4.129 29 C 0.169 3.831 30 H 0.020 0.980 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.398 -16.407 -4.776 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.328 5.328 16 C 0.352 3.648 17 O -0.415 6.415 18 C -0.174 4.174 19 C -0.069 4.069 20 C -0.205 4.205 21 C -0.037 4.037 22 N -0.193 5.193 23 C 0.073 3.927 24 C -0.151 4.151 25 C -0.191 4.191 26 C -0.194 4.194 27 C -0.018 4.018 28 C -0.168 4.168 29 C 0.060 3.940 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.979 -16.614 -5.774 20.223 hybrid contribution 0.544 1.137 1.126 1.690 sum 10.523 -15.477 -4.648 19.284 Atomic orbital electron populations 1.69935 1.04892 1.25064 1.56902 1.24784 0.95666 0.97616 1.02254 0.86164 0.78607 0.83688 0.77564 1.21636 1.21676 1.20727 1.18982 0.90328 0.82312 1.43891 0.90423 1.44201 1.01664 0.99426 1.86592 1.21531 0.83898 0.88278 1.00984 1.22721 0.95728 0.99690 0.99330 1.22640 0.97939 0.93147 1.00700 0.90170 1.21684 0.81148 0.97310 0.99344 1.48256 1.10157 1.27046 1.47300 1.18104 0.87214 0.81232 0.78229 1.90749 1.47098 1.43655 1.59988 1.20668 0.94734 1.06897 0.95121 1.21756 0.91492 0.93280 1.00382 1.22067 0.98154 1.03454 0.96780 1.22906 0.97332 0.93013 0.90498 1.67426 0.98340 1.13469 1.40113 1.20346 0.91848 0.90767 0.89730 1.21277 0.96844 1.07412 0.89586 1.22935 1.03616 0.97132 0.95429 1.22974 1.03597 0.92372 1.00456 1.22010 0.89137 0.90671 1.00031 1.21894 0.99553 0.93264 1.02121 1.20615 0.90995 0.87283 0.95064 0.96299 0.93734 0.92705 0.94342 0.92004 0.92300 0.89079 0.91086 0.84083 0.84070 0.82275 0.84667 0.87606 0.88554 0.88146 0.88535 0.91436 0.90115 0.90490 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.44 55.49 0.58 -25.99 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.07 9.88 -15.06 -0.15 -6.21 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.59 -14.50 3.35 -163.09 -0.55 -15.05 16 10 C 0.18 4.18 5.45 -1.92 -0.01 4.17 16 11 C -0.14 -2.45 6.54 -25.13 -0.16 -2.62 16 12 C -0.12 -2.14 2.86 -89.36 -0.26 -2.40 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 14 C 0.13 1.88 5.94 -3.76 -0.02 1.85 16 15 N -0.60 -8.46 3.00 -173.60 -0.52 -8.98 16 16 C 0.57 8.38 6.57 -12.33 -0.08 8.30 16 17 O -0.54 -9.30 14.60 5.31 0.08 -9.22 16 18 C -0.17 -2.19 4.79 -104.82 -0.50 -2.69 16 19 C -0.04 -0.43 7.61 -38.87 -0.30 -0.72 16 20 C -0.18 -1.51 10.10 -39.49 -0.40 -1.91 16 21 C 0.12 1.09 11.17 -17.47 -0.20 0.90 16 22 N -0.48 -5.81 9.37 -9.15 -0.09 -5.89 16 23 C 0.21 2.79 6.47 -82.17 -0.53 2.26 16 24 C -0.13 -1.73 5.55 -91.77 -0.51 -2.24 16 25 C -0.15 -1.67 10.02 -26.69 -0.27 -1.93 16 26 C -0.16 -1.80 10.23 -26.69 -0.27 -2.07 16 27 C 0.10 1.35 5.31 -3.49 -0.02 1.34 16 28 C -0.13 -2.13 5.48 -26.98 -0.15 -2.28 16 29 C 0.17 3.26 2.57 -67.97 -0.17 3.09 16 30 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 33 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.14 1.15 7.42 -52.49 -0.39 0.76 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 1.98 5.97 -51.93 -0.31 1.67 16 42 H 0.11 1.15 7.62 -51.93 -0.40 0.75 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.94 4.86 -51.93 -0.25 0.68 16 48 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 49 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -31.73 381.89 -11.31 -43.05 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.46 Total: 3.14 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -4.09 Total: -3.45 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.57 Total: -55.92 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.73 -11.31 -43.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036761383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.006 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds