Wall clock time and date at job start Wed Apr 1 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00035 * 2 1 4 4 H 1.48501 * 109.46886 * 274.99025 * 3 2 1 5 5 H 1.48490 * 109.47001 * 34.99135 * 3 2 1 6 6 H 1.48495 * 109.47185 * 154.99422 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00345 * 185.37025 * 7 2 1 9 9 N 1.36941 * 119.99710 * 5.35930 * 7 2 1 10 10 C 1.48154 * 126.40395 * 354.10195 * 9 7 2 11 11 C 1.55293 * 107.04237 * 184.94262 * 10 9 7 12 12 C 1.53747 * 101.83679 * 22.48720 * 11 10 9 13 13 H 1.08993 * 111.98421 * 79.23058 * 12 11 10 14 14 C 1.52238 * 114.74541 * 207.22670 * 12 11 10 15 15 N 1.47729 * 106.36169 * 169.59315 * 14 12 11 16 16 C 1.34775 * 119.68364 * 127.91393 * 15 14 12 17 17 O 1.21546 * 120.00333 * 3.93330 * 16 15 14 18 18 C 1.47844 * 119.99912 * 183.93674 * 16 15 14 19 19 C 1.40029 * 120.55340 * 306.80299 * 18 16 15 20 20 C 1.38357 * 118.28702 * 180.25419 * 19 18 16 21 21 C 1.38359 * 119.30168 * 0.06439 * 20 19 18 22 22 N 1.31926 * 121.08034 * 359.93258 * 21 20 19 23 23 C 1.31699 * 121.87918 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.71527 * 179.97438 * 23 22 21 25 25 C 1.52998 * 117.49754 * 13.19080 * 24 23 22 26 26 C 1.53002 * 117.49730 * 304.56822 * 24 23 22 27 27 C 1.46589 * 120.62636 * 308.19821 * 15 14 12 28 28 C 1.54793 * 110.71717 * 47.75102 * 27 15 14 29 29 C 1.45472 * 126.40545 * 174.13189 * 9 7 2 30 30 H 1.09000 * 109.26920 * 266.18626 * 29 9 7 31 31 H 0.97007 * 120.00248 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.92595 * 304.29360 * 10 9 7 33 33 H 1.09001 * 109.91746 * 65.39878 * 10 9 7 34 34 H 1.08998 * 110.96015 * 264.35044 * 11 10 9 35 35 H 1.09001 * 110.95356 * 140.61574 * 11 10 9 36 36 H 1.09005 * 110.07472 * 50.38663 * 14 12 11 37 37 H 1.08998 * 110.07602 * 288.80271 * 14 12 11 38 38 H 1.07998 * 120.85928 * 0.25035 * 19 18 16 39 39 H 1.07995 * 120.35288 * 180.02562 * 20 19 18 40 40 H 1.08003 * 119.46007 * 179.97438 * 21 20 19 41 41 H 1.09004 * 115.54858 * 158.89900 * 24 23 22 42 42 H 1.09002 * 117.50258 * 359.97438 * 25 24 23 43 43 H 1.09004 * 117.49445 * 145.02124 * 25 24 23 44 44 H 1.09004 * 117.49419 * 214.97699 * 26 24 23 45 45 H 1.08998 * 117.50192 * 0.02562 * 26 24 23 46 46 H 1.09004 * 109.25871 * 167.85334 * 27 15 14 47 47 H 1.09007 * 109.25227 * 287.28254 * 27 15 14 48 48 H 1.08995 * 109.87153 * 189.66685 * 28 27 15 49 49 H 1.08998 * 110.48743 * 68.27134 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0867 -1.2042 0.0870 9 7 1.3300 -2.3854 -0.1118 10 6 -0.1416 -2.5566 -0.1164 11 6 -0.4221 -4.0838 -0.1365 12 6 0.8875 -4.6525 0.4339 13 1 0.9286 -4.5716 1.5200 14 6 1.2229 -6.0645 -0.0262 15 7 2.6091 -6.3267 0.4120 16 6 2.8858 -7.4390 1.1210 17 8 2.0119 -8.2561 1.3357 18 6 4.2524 -7.6654 1.6376 19 6 5.3564 -7.6119 0.7778 20 6 6.6136 -7.8363 1.3102 21 6 6.7385 -8.1050 2.6617 22 7 5.6801 -8.1490 3.4480 23 6 4.4633 -7.9417 2.9887 24 6 3.2886 -8.0043 3.9307 25 6 3.5857 -8.0017 5.4315 26 6 3.1065 -9.2843 4.7487 27 6 3.6853 -5.3855 0.0884 28 6 3.2605 -3.9338 0.4174 29 6 1.9173 -3.7094 -0.2471 30 1 1.9918 -3.9636 -1.3044 31 1 -0.4851 0.8401 -0.0004 32 1 -0.5701 -2.1121 0.7819 33 1 -0.5674 -2.0861 -1.0027 34 1 -0.5894 -4.4362 -1.1543 35 1 -1.2674 -4.3334 0.5048 36 1 1.1552 -6.1302 -1.1121 37 1 0.5428 -6.7800 0.4361 38 1 5.2298 -7.4011 -0.2738 39 1 7.4881 -7.8026 0.6775 40 1 7.7186 -8.2809 3.0799 41 1 2.3885 -7.4894 3.5945 42 1 4.6308 -7.9551 5.7377 43 1 2.8810 -7.4849 6.0831 44 1 2.0866 -9.6114 4.9512 45 1 3.8366 -10.0810 4.6060 46 1 4.5709 -5.6376 0.6716 47 1 3.9214 -5.4607 -0.9732 48 1 3.9936 -3.2335 0.0172 49 1 3.1682 -3.7982 1.4950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036761385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:41 Heat of formation + Delta-G solvation = 65.332407 kcal Electronic energy + Delta-G solvation = -30531.367561 eV Core-core repulsion = 26653.121337 eV Total energy + Delta-G solvation = -3878.246224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17211 -39.71320 -38.15173 -37.02832 -35.42526 -33.20849 -32.40266 -31.59693 -31.43997 -29.55987 -28.14084 -25.42499 -24.86936 -24.52793 -23.06355 -22.45971 -22.38519 -20.99402 -20.23719 -19.97963 -19.24723 -17.44053 -17.30298 -16.52401 -16.29256 -16.09142 -15.39686 -15.10838 -14.85011 -14.54251 -14.37552 -14.11107 -13.98014 -13.81398 -13.53786 -13.22299 -13.10408 -12.77764 -12.58266 -12.47738 -11.82395 -11.69755 -11.57440 -11.56044 -11.44829 -11.01480 -10.86152 -10.82921 -10.78454 -10.57920 -10.28558 -10.17535 -10.05910 -10.00095 -9.88903 -9.65120 -9.55940 -9.46129 -9.01764 -8.64266 -8.58667 -6.86248 -5.75861 -3.08518 0.57776 0.91087 2.58627 2.94898 3.36060 3.37172 3.42180 3.44499 3.90763 3.96656 4.23016 4.41170 4.46279 4.52054 4.75928 4.88549 4.94377 4.97050 5.00378 5.03856 5.13052 5.24419 5.29334 5.37270 5.47323 5.51070 5.56111 5.58494 5.72157 5.75446 5.76943 5.80884 5.84508 5.97282 6.03549 6.09119 6.11784 6.13155 6.18350 6.28085 6.34615 6.44042 6.56563 6.59939 6.77520 7.02177 7.35706 7.53218 7.57649 7.67620 7.77743 8.09355 8.20958 9.15794 9.79561 10.47899 11.37169 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.003119 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.632996 B = 8975.561876 C = 9484.021902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.598 5.598 16 C 0.562 3.438 17 O -0.532 6.532 18 C -0.169 4.169 19 C -0.043 4.043 20 C -0.185 4.185 21 C 0.120 3.880 22 N -0.485 5.485 23 C 0.210 3.790 24 C -0.119 4.119 25 C -0.159 4.159 26 C -0.149 4.149 27 C 0.104 3.896 28 C -0.129 4.129 29 C 0.167 3.833 30 H 0.021 0.979 31 H 0.252 0.748 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.160 0.840 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.497 -17.346 3.303 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.145 4.145 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.330 5.330 16 C 0.349 3.651 17 O -0.409 6.409 18 C -0.174 4.174 19 C -0.069 4.069 20 C -0.204 4.204 21 C -0.037 4.037 22 N -0.193 5.193 23 C 0.072 3.928 24 C -0.138 4.138 25 C -0.196 4.196 26 C -0.187 4.187 27 C -0.020 4.020 28 C -0.168 4.168 29 C 0.059 3.941 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.087 -17.676 4.283 20.797 hybrid contribution 0.506 1.308 -1.120 1.795 sum 10.593 -16.368 3.163 19.752 Atomic orbital electron populations 1.69947 1.04924 1.25080 1.56675 1.24801 0.95657 0.97630 1.02168 0.86153 0.78677 0.83776 0.77494 1.21635 1.21768 1.20661 1.18991 0.90739 0.82376 1.43507 0.90405 1.44217 1.01629 1.00239 1.85856 1.21527 0.84012 0.88080 1.01109 1.22699 0.95611 0.99457 0.99587 1.22644 0.97949 0.93274 1.00615 0.90229 1.21678 0.80990 0.97396 0.99392 1.48258 1.10077 1.21218 1.53417 1.18111 0.87261 0.81795 0.77947 1.90780 1.47513 1.44350 1.58282 1.20690 0.94725 1.06517 0.95459 1.21771 0.91538 0.93416 1.00188 1.22071 0.98088 1.03136 0.97156 1.22907 0.97431 0.93070 0.90334 1.67421 0.98385 1.14429 1.39102 1.20351 0.91785 0.90719 0.89932 1.20966 0.96333 1.04760 0.91750 1.22992 1.03171 1.00696 0.92719 1.22879 1.02605 0.91027 1.02181 1.22163 0.89298 0.89983 1.00524 1.22052 0.99497 0.93424 1.01820 1.20657 0.91029 0.86977 0.95464 0.96171 0.93734 0.93239 0.93955 0.92230 0.92012 0.91079 0.89091 0.84063 0.84065 0.82262 0.85998 0.87509 0.88487 0.88248 0.88703 0.90142 0.91371 0.90463 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.47 55.49 0.58 -25.99 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.10 9.88 -15.06 -0.15 -6.25 16 8 H 0.08 2.00 7.14 -52.49 -0.37 1.62 16 9 N -0.59 -14.53 3.35 -163.09 -0.55 -15.08 16 10 C 0.18 4.18 5.44 -1.92 -0.01 4.17 16 11 C -0.13 -2.43 6.54 -25.13 -0.16 -2.60 16 12 C -0.12 -2.15 2.86 -89.37 -0.26 -2.41 16 13 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 14 C 0.13 1.88 5.95 -3.76 -0.02 1.86 16 15 N -0.60 -8.47 3.00 -173.07 -0.52 -8.99 16 16 C 0.56 8.32 6.29 -12.33 -0.08 8.24 16 17 O -0.53 -9.22 15.22 5.32 0.08 -9.14 16 18 C -0.17 -2.18 4.81 -104.82 -0.50 -2.68 16 19 C -0.04 -0.43 7.60 -38.87 -0.30 -0.72 16 20 C -0.18 -1.50 10.10 -39.49 -0.40 -1.90 16 21 C 0.12 1.09 11.17 -17.47 -0.20 0.89 16 22 N -0.48 -5.77 9.36 -9.14 -0.09 -5.86 16 23 C 0.21 2.76 6.47 -82.17 -0.53 2.23 16 24 C -0.12 -1.54 5.18 -91.77 -0.48 -2.02 16 25 C -0.16 -1.72 10.02 -26.73 -0.27 -1.98 16 26 C -0.15 -1.65 10.23 -26.73 -0.27 -1.92 16 27 C 0.10 1.34 5.26 -3.05 -0.02 1.32 16 28 C -0.13 -2.13 5.49 -26.53 -0.15 -2.27 16 29 C 0.17 3.23 2.57 -67.98 -0.17 3.05 16 30 H 0.02 0.41 7.92 -51.93 -0.41 0.00 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.05 1.30 7.41 -51.93 -0.38 0.92 16 33 H 0.04 1.10 7.61 -51.93 -0.40 0.71 16 34 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.57 16 37 H 0.09 1.37 7.02 -51.93 -0.36 1.01 16 38 H 0.14 1.16 7.35 -52.49 -0.39 0.77 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 1.75 6.81 -51.93 -0.35 1.40 16 42 H 0.11 1.16 7.61 -51.93 -0.40 0.77 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.08 0.93 4.84 -51.93 -0.25 0.68 16 47 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 48 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 49 H 0.07 1.23 8.11 -51.93 -0.42 0.80 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -31.86 382.48 -11.29 -43.15 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.49 Total: 2.74 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -4.05 Total: -3.25 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.57 Total: -55.91 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.86 -11.29 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036761385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.481 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds