Wall clock time and date at job start Wed Apr 1 2020 00:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00116 * 2 1 4 4 H 1.48497 * 109.47151 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47397 * 240.00042 * 3 2 1 6 6 H 1.48507 * 109.46867 * 119.99971 * 3 2 1 7 7 C 1.38810 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00429 * 148.49562 * 7 2 1 9 9 N 1.36935 * 119.99840 * 328.49039 * 7 2 1 10 10 C 1.46874 * 125.33923 * 344.30223 * 9 7 2 11 11 C 1.54464 * 106.66223 * 195.32742 * 10 9 7 12 12 C 1.53387 * 102.53794 * 332.27447 * 11 10 9 13 13 H 1.09003 * 105.69228 * 277.66169 * 12 11 10 14 14 C 1.49276 * 114.27616 * 161.16069 * 12 11 10 15 15 N 1.43546 * 115.75959 * 258.67756 * 14 12 11 16 16 C 1.34779 * 120.32145 * 143.72929 * 15 14 12 17 17 O 1.21557 * 119.99996 * 355.50114 * 16 15 14 18 18 C 1.47838 * 120.00025 * 175.49845 * 16 15 14 19 19 C 1.40021 * 120.56136 * 309.20539 * 18 16 15 20 20 C 1.38356 * 118.28913 * 179.73610 * 19 18 16 21 21 C 1.38363 * 119.30123 * 0.53839 * 20 19 18 22 22 N 1.31923 * 121.07657 * 359.72064 * 21 20 19 23 23 C 1.31689 * 121.88346 * 0.02562 * 22 21 20 24 24 C 1.50701 * 119.71671 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.49791 * 8.10760 * 24 23 22 26 26 C 1.52998 * 117.49422 * 299.44624 * 24 23 22 27 27 C 1.46824 * 119.37412 * 324.32405 * 15 14 12 28 28 C 1.52958 * 107.40423 * 54.41421 * 27 15 14 29 29 C 1.48011 * 125.33839 * 163.98952 * 9 7 2 30 30 H 1.08998 * 110.22689 * 303.31893 * 29 9 7 31 31 H 0.96995 * 120.00379 * 175.16806 * 1 2 3 32 32 H 1.08998 * 110.01716 * 314.63029 * 10 9 7 33 33 H 1.08997 * 110.02048 * 75.98242 * 10 9 7 34 34 H 1.09006 * 110.79183 * 90.53246 * 11 10 9 35 35 H 1.08996 * 110.79440 * 214.00822 * 11 10 9 36 36 H 1.08991 * 108.44894 * 20.47600 * 14 12 11 37 37 H 1.09004 * 108.44273 * 137.80045 * 14 12 11 38 38 H 1.08005 * 120.85656 * 359.97081 * 19 18 16 39 39 H 1.07992 * 120.35167 * 180.23477 * 20 19 18 40 40 H 1.07997 * 119.45768 * 179.74451 * 21 20 19 41 41 H 1.08997 * 115.55132 * 153.77933 * 24 23 22 42 42 H 1.08994 * 117.50106 * 359.97438 * 25 24 23 43 43 H 1.09003 * 117.49892 * 145.02677 * 25 24 23 44 44 H 1.09000 * 117.49636 * 214.97716 * 26 24 23 45 45 H 1.09001 * 117.50383 * 359.97438 * 26 24 23 46 46 H 1.09002 * 109.86894 * 294.93830 * 27 15 14 47 47 H 1.09001 * 109.87507 * 173.88682 * 27 15 14 48 48 H 1.08997 * 109.38696 * 178.38684 * 28 27 15 49 49 H 1.08993 * 109.38700 * 58.70340 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6965 -1.2125 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 2.9709 -1.2710 -0.4893 9 7 1.4769 -2.3009 0.6188 10 6 0.3676 -2.2788 1.5811 11 6 0.3714 -3.6496 2.2929 12 6 0.9903 -4.5722 1.2353 13 1 0.1742 -4.8410 0.5646 14 6 1.5258 -5.8555 1.7782 15 7 2.9494 -5.9129 1.9537 16 6 3.4797 -6.5753 3.0009 17 8 2.7519 -7.0579 3.8464 18 6 4.9465 -6.7149 3.1211 19 6 5.7072 -7.1883 2.0451 20 6 7.0771 -7.2951 2.2073 21 6 7.6448 -6.9448 3.4195 22 7 6.9022 -6.5067 4.4180 23 6 5.5955 -6.3829 4.3108 24 6 4.7943 -5.8779 5.4831 25 6 5.5682 -5.3501 6.6927 26 6 4.8420 -6.6951 6.7757 27 6 3.8220 -5.2320 0.9890 28 6 3.3700 -3.7727 0.9138 29 6 1.9238 -3.6976 0.4185 30 1 1.8651 -3.9644 -0.6367 31 1 -0.4850 -0.8370 -0.0708 32 1 0.5197 -1.4806 2.3076 33 1 -0.5773 -2.1318 1.0580 34 1 0.9907 -3.6184 3.1894 35 1 -0.6443 -3.9634 2.5336 36 1 1.0556 -6.0448 2.7430 37 1 1.2464 -6.6607 1.0987 38 1 5.2372 -7.4594 1.1113 39 1 7.6962 -7.6527 1.3979 40 1 8.7134 -7.0311 3.5502 41 1 3.8544 -5.3859 5.2331 42 1 6.6568 -5.3684 6.6409 43 1 5.1372 -4.5110 7.2389 44 1 3.9336 -6.7402 7.3764 45 1 5.4525 -7.5981 6.7781 46 1 3.7274 -5.7002 0.0092 47 1 4.8574 -5.2822 1.3261 48 1 4.0167 -3.2286 0.2255 49 1 3.4371 -3.3217 1.9037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036761386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:44 Heat of formation + Delta-G solvation = 61.628966 kcal Electronic energy + Delta-G solvation = -30740.183727 eV Core-core repulsion = 26861.776910 eV Total energy + Delta-G solvation = -3878.406817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.23259 -39.88217 -38.26453 -37.02157 -35.63484 -33.41151 -32.55386 -31.81981 -31.43996 -29.57351 -28.35255 -25.61525 -24.87200 -24.41414 -23.30162 -22.85741 -22.37734 -21.00532 -20.37670 -20.24951 -18.27446 -17.59117 -17.52691 -17.29475 -16.44647 -16.14087 -15.49116 -15.30524 -14.64203 -14.55441 -14.50170 -14.19899 -13.98972 -13.66925 -13.51885 -13.29462 -13.14099 -13.03735 -12.89766 -12.40964 -12.05404 -11.84990 -11.70917 -11.56905 -11.43422 -11.19135 -10.94372 -10.68262 -10.56759 -10.50772 -10.43852 -10.22699 -10.05165 -10.02104 -9.91896 -9.77714 -9.60431 -9.50016 -9.04687 -8.62127 -8.31813 -6.95892 -6.12295 -3.14386 0.55274 0.90247 2.56068 2.97217 3.36909 3.47918 3.53549 3.70437 3.88741 3.96291 4.22413 4.40966 4.51038 4.55235 4.74436 4.85035 4.89696 4.96640 4.98901 5.02866 5.08330 5.13908 5.23817 5.25813 5.36091 5.38428 5.51599 5.59704 5.69166 5.71767 5.74652 5.77558 5.81303 5.84807 5.93055 6.03048 6.04352 6.13003 6.15102 6.19369 6.31618 6.37216 6.44692 6.63778 6.74025 6.90896 7.02149 7.07822 7.33491 7.66686 7.78373 8.07914 8.48010 9.00162 9.80494 10.35224 11.19200 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.003284 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.307168 B = 8523.426470 C = 8791.112310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.023 4.023 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.340 4.340 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.143 3.857 11 C -0.124 4.124 12 C -0.106 4.106 13 H 0.068 0.932 14 C 0.132 3.868 15 N -0.589 5.589 16 C 0.563 3.437 17 O -0.529 6.529 18 C -0.168 4.168 19 C -0.041 4.041 20 C -0.185 4.185 21 C 0.121 3.879 22 N -0.484 5.484 23 C 0.211 3.789 24 C -0.118 4.118 25 C -0.159 4.159 26 C -0.149 4.149 27 C 0.100 3.900 28 C -0.136 4.136 29 C 0.171 3.829 30 H 0.042 0.958 31 H 0.269 0.731 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.160 0.840 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.247 -16.372 6.037 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.226 4.226 3 Si 0.889 3.111 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.018 3.982 11 C -0.163 4.163 12 C -0.126 4.126 13 H 0.086 0.914 14 C 0.009 3.991 15 N -0.320 5.320 16 C 0.350 3.650 17 O -0.406 6.406 18 C -0.173 4.173 19 C -0.068 4.068 20 C -0.205 4.205 21 C -0.037 4.037 22 N -0.193 5.193 23 C 0.073 3.927 24 C -0.137 4.137 25 C -0.196 4.196 26 C -0.186 4.186 27 C -0.023 4.023 28 C -0.176 4.176 29 C 0.065 3.935 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.178 0.822 41 H 0.139 0.861 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.065 -14.642 7.241 20.307 hybrid contribution -0.187 -1.827 -1.296 2.248 sum 11.877 -16.469 5.945 21.158 Atomic orbital electron populations 1.70804 1.06825 1.30160 1.47302 1.25667 0.96249 1.00989 0.99652 0.83601 0.74999 0.76321 0.76174 1.21137 1.22029 1.22187 1.19636 1.01956 0.88803 1.36312 0.91742 1.44782 1.39519 1.00560 1.47225 1.21287 0.92045 0.93464 0.91434 1.22455 0.99541 0.96670 0.97614 1.20744 0.99148 0.94300 0.98377 0.91399 1.19969 0.80052 0.96709 1.02389 1.47162 1.07392 1.51561 1.25909 1.18059 0.87118 0.78838 0.80945 1.90784 1.61303 1.48576 1.39977 1.20629 0.94676 1.05992 0.96026 1.21751 0.93868 0.93631 0.97503 1.22072 0.95266 1.03406 0.99737 1.22921 1.00205 0.92106 0.88432 1.67428 1.05718 1.14135 1.32006 1.20370 0.89180 0.91315 0.91805 1.20929 1.00008 1.05798 0.86951 1.23004 1.00244 0.97175 0.99216 1.22877 1.02642 0.95516 0.97579 1.22021 0.93932 0.94342 0.92030 1.22335 0.99486 0.92968 1.02832 1.20441 0.91237 0.86234 0.95638 0.94068 0.91926 0.94183 0.95296 0.92125 0.91565 0.89509 0.92730 0.84114 0.84064 0.82231 0.86072 0.87438 0.88497 0.88232 0.88815 0.91119 0.90100 0.90992 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.22 12.99 55.49 0.72 -26.50 16 2 C -0.02 -0.65 5.10 -17.43 -0.09 -0.74 16 3 Si 1.06 25.17 30.02 -169.99 -5.10 20.06 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.34 -9.27 9.55 -15.06 -0.14 -9.41 16 8 H 0.06 1.75 7.75 -52.48 -0.41 1.34 16 9 N -0.60 -14.48 2.95 -163.99 -0.48 -14.97 16 10 C 0.14 3.30 5.58 -3.07 -0.02 3.29 16 11 C -0.12 -2.25 6.37 -25.76 -0.16 -2.41 16 12 C -0.11 -1.77 2.48 -92.87 -0.23 -2.00 16 13 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 14 C 0.13 1.92 5.85 -7.44 -0.04 1.88 16 15 N -0.59 -8.32 2.95 -179.09 -0.53 -8.85 16 16 C 0.56 8.36 6.37 -12.33 -0.08 8.28 16 17 O -0.53 -9.18 15.16 5.32 0.08 -9.10 16 18 C -0.17 -2.17 4.75 -104.82 -0.50 -2.67 16 19 C -0.04 -0.41 7.73 -38.87 -0.30 -0.71 16 20 C -0.19 -1.50 10.10 -39.49 -0.40 -1.90 16 21 C 0.12 1.10 11.17 -17.47 -0.20 0.90 16 22 N -0.48 -5.82 9.31 -9.14 -0.09 -5.90 16 23 C 0.21 2.80 6.48 -82.17 -0.53 2.27 16 24 C -0.12 -1.56 5.00 -91.77 -0.46 -2.02 16 25 C -0.16 -1.77 10.03 -26.69 -0.27 -2.03 16 26 C -0.15 -1.68 10.24 -26.69 -0.27 -1.95 16 27 C 0.10 1.30 5.44 -3.89 -0.02 1.28 16 28 C -0.14 -2.33 5.18 -26.72 -0.14 -2.47 16 29 C 0.17 3.32 3.41 -67.69 -0.23 3.09 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.27 8.06 6.04 -40.82 -0.25 7.81 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.73 6.33 -51.93 -0.33 0.40 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.33 6.69 -51.93 -0.35 0.98 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.14 1.14 7.55 -52.48 -0.40 0.74 16 39 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.79 6.98 -51.93 -0.36 1.43 16 42 H 0.11 1.19 7.57 -51.93 -0.39 0.80 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.96 5.13 -51.93 -0.27 0.70 16 48 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 49 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -32.64 383.03 -11.15 -43.80 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.44 Total: 3.01 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -4.08 Total: -7.32 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.38 Total: -56.22 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.64 -11.15 -43.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036761386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.426 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds