Wall clock time and date at job start Wed Apr 1 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47266 * 240.00179 * 3 2 1 5 5 H 1.48504 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47064 * 120.00134 * 3 2 1 7 7 C 1.38810 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00506 * 359.97438 * 7 2 1 10 10 C 1.48161 * 126.39967 * 359.96379 * 9 7 2 11 11 C 1.55298 * 107.04208 * 175.10856 * 10 9 7 12 12 C 1.53748 * 101.84046 * 337.52026 * 11 10 9 13 13 H 1.09001 * 111.30505 * 281.04552 * 12 11 10 14 14 C 1.52233 * 114.73965 * 152.75508 * 12 11 10 15 15 N 1.47720 * 106.36643 * 190.42349 * 14 12 11 16 16 C 1.34776 * 119.68816 * 232.04215 * 15 14 12 17 17 O 1.21280 * 119.99638 * 355.23935 * 16 15 14 18 18 C 1.50697 * 120.00288 * 175.24253 * 16 15 14 19 19 C 1.50705 * 115.54780 * 294.61287 * 18 16 15 20 20 C 1.38668 * 120.42019 * 304.31907 * 19 18 16 21 21 C 1.38632 * 118.41821 * 179.78432 * 20 19 18 22 22 C 1.38226 * 119.16046 * 0.50709 * 21 20 19 23 23 N 1.31858 * 120.76476 * 359.73288 * 22 21 20 24 24 C 1.31885 * 121.72684 * 359.97438 * 23 22 21 25 25 C 1.53003 * 117.50022 * 148.94698 * 18 16 15 26 26 C 1.52997 * 117.49972 * 80.28728 * 18 16 15 27 27 C 1.46604 * 120.63083 * 52.05682 * 15 14 12 28 28 C 1.53952 * 110.57729 * 312.18117 * 27 15 14 29 29 C 1.45464 * 126.41104 * 180.02562 * 9 7 2 30 30 H 1.09002 * 109.26716 * 93.76668 * 29 9 7 31 31 H 0.96994 * 120.00060 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.91908 * 294.45482 * 10 9 7 33 33 H 1.08997 * 109.92437 * 55.56296 * 10 9 7 34 34 H 1.09004 * 110.95021 * 95.65821 * 11 10 9 35 35 H 1.08997 * 110.95332 * 219.38089 * 11 10 9 36 36 H 1.08996 * 110.07578 * 309.63828 * 14 12 11 37 37 H 1.09002 * 110.06896 * 71.10513 * 14 12 11 38 38 H 1.07998 * 120.79021 * 0.02562 * 20 19 18 39 39 H 1.08000 * 120.41580 * 180.22000 * 21 20 19 40 40 H 1.07997 * 119.62072 * 179.75114 * 22 21 20 41 41 H 1.07996 * 119.62061 * 180.02562 * 24 23 22 42 42 H 1.08998 * 117.49470 * 359.97438 * 25 18 16 43 43 H 1.09001 * 117.49670 * 145.02053 * 25 18 16 44 44 H 1.09005 * 117.49717 * 214.98238 * 26 18 16 45 45 H 1.09001 * 117.49859 * 359.97438 * 26 18 16 46 46 H 1.08998 * 109.25002 * 72.46331 * 27 15 14 47 47 H 1.09003 * 109.25696 * 191.93031 * 27 15 14 48 48 H 1.09000 * 109.87766 * 291.58852 * 28 27 15 49 49 H 1.08993 * 109.88135 * 170.51397 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1467 -2.5533 0.0007 11 6 -0.4341 -4.0742 -0.1264 12 6 0.8679 -4.5892 -0.7616 13 1 0.8904 -4.3924 -1.8335 14 6 1.2006 -6.0406 -0.4448 15 7 2.5818 -6.2639 -0.9187 16 6 2.8477 -7.3032 -1.7347 17 8 1.9741 -8.0991 -2.0071 18 6 4.2304 -7.4762 -2.3084 19 6 4.6780 -6.3985 -3.2620 20 6 3.9190 -6.0919 -4.3813 21 6 4.3673 -5.0900 -5.2282 22 6 5.5529 -4.4420 -4.9365 23 7 6.2515 -4.7635 -3.8653 24 6 5.8526 -5.7071 -3.0347 25 6 4.7086 -8.9038 -2.5809 26 6 5.2937 -8.1107 -1.4098 27 6 3.6662 -5.3662 -0.5097 28 6 3.2473 -3.8955 -0.6876 29 6 1.9079 -3.7211 -0.0005 30 1 1.9899 -4.0778 1.0262 31 1 -0.4850 0.8400 0.0004 32 1 -0.5622 -2.1737 0.9342 33 1 -0.5812 -2.0184 -0.8437 34 1 -0.5943 -4.5238 0.8536 35 1 -1.2861 -4.2564 -0.7813 36 1 1.1417 -6.2119 0.6300 37 1 0.5122 -6.7048 -0.9673 38 1 2.9985 -6.6183 -4.5862 39 1 3.7998 -4.8225 -6.1072 40 1 5.9112 -3.6632 -5.5933 41 1 6.4513 -5.9425 -2.1672 42 1 4.0232 -9.7178 -2.3449 43 1 5.3473 -9.0634 -3.4497 44 1 6.3172 -7.7488 -1.5085 45 1 4.9933 -8.4026 -0.4034 46 1 3.9068 -5.5472 0.5378 47 1 4.5470 -5.5649 -1.1203 48 1 3.1532 -3.6626 -1.7483 49 1 3.9876 -3.2410 -0.2277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036799863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:48 Heat of formation + Delta-G solvation = 66.227189 kcal Electronic energy + Delta-G solvation = -31194.049149 eV Core-core repulsion = 27315.841726 eV Total energy + Delta-G solvation = -3878.207424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17640 -39.82597 -38.55772 -36.72180 -35.40326 -32.69162 -32.53847 -31.58865 -31.08445 -29.69243 -28.20924 -25.65917 -24.71296 -24.00309 -23.62369 -22.48470 -22.29626 -21.86068 -20.09339 -19.65463 -18.74739 -17.68823 -17.00420 -16.38999 -16.19634 -16.03120 -15.65981 -15.08874 -14.79820 -14.63321 -14.41648 -14.09462 -13.94495 -13.78090 -13.32162 -13.21369 -13.07923 -12.81191 -12.56138 -12.40953 -12.15677 -11.75551 -11.70129 -11.50377 -11.45211 -11.16494 -10.85310 -10.83059 -10.79487 -10.70890 -10.20555 -10.13038 -10.04568 -9.88878 -9.81311 -9.63749 -9.51267 -9.43647 -8.99649 -8.63150 -8.54408 -6.85115 -5.72495 -3.05753 0.89033 1.12715 2.48139 2.93837 3.36272 3.39429 3.44050 3.44914 3.69890 4.09914 4.30130 4.38695 4.48291 4.54060 4.63172 4.79451 4.82298 5.01023 5.04857 5.07220 5.21427 5.27122 5.29343 5.32995 5.44435 5.52933 5.55680 5.56722 5.60295 5.61692 5.78593 5.80822 5.86764 5.96602 6.00144 6.06122 6.12981 6.16926 6.22005 6.33664 6.46352 6.50412 6.59068 6.62163 6.81024 7.04303 7.43852 7.53742 7.59566 7.79564 7.80728 8.15405 8.23288 9.18339 9.81903 10.49811 11.39924 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.004042 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.815406 B = 6925.599058 C = 8318.359692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.078 0.922 14 C 0.127 3.873 15 N -0.596 5.596 16 C 0.553 3.447 17 O -0.543 6.543 18 C -0.118 4.118 19 C -0.095 4.095 20 C -0.060 4.060 21 C -0.165 4.165 22 C 0.099 3.901 23 N -0.478 5.478 24 C 0.105 3.895 25 C -0.132 4.132 26 C -0.157 4.157 27 C 0.108 3.892 28 C -0.126 4.126 29 C 0.169 3.831 30 H 0.019 0.981 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 -16.058 -5.987 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.327 5.327 16 C 0.339 3.661 17 O -0.420 6.420 18 C -0.122 4.122 19 C -0.097 4.097 20 C -0.086 4.086 21 C -0.185 4.185 22 C -0.058 4.058 23 N -0.186 5.186 24 C -0.052 4.052 25 C -0.169 4.169 26 C -0.194 4.194 27 C -0.015 4.015 28 C -0.165 4.165 29 C 0.060 3.940 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.957 -15.733 -5.929 19.540 hybrid contribution -0.426 0.736 -0.187 0.871 sum 9.530 -14.996 -6.116 18.792 Atomic orbital electron populations 1.69926 1.04878 1.25143 1.56959 1.24776 0.95659 0.97588 1.02283 0.86246 0.78508 0.83394 0.77909 1.21197 1.21603 1.21169 1.18936 0.90292 0.82319 1.43859 0.90512 1.44186 1.01621 0.99430 1.86584 1.21534 0.83948 0.88251 1.01000 1.22716 0.95716 0.99705 0.99304 1.22625 0.97929 0.93246 1.00589 0.90368 1.21640 0.81442 0.97113 0.99312 1.48218 1.09877 1.27268 1.47353 1.19301 0.87802 0.80874 0.78103 1.90673 1.47272 1.43476 1.60616 1.19956 0.94489 0.95497 1.02254 1.19712 0.96802 0.97634 0.95545 1.21442 0.98922 0.95599 0.92617 1.22160 0.98028 0.97143 1.01139 1.22811 0.91429 0.97679 0.93843 1.67738 1.33261 1.13945 1.03634 1.22625 0.93539 0.91256 0.97773 1.23066 1.02091 0.91971 0.99819 1.23198 0.97422 1.02371 0.96413 1.21915 0.89109 0.90358 1.00138 1.21848 0.99434 0.93487 1.01772 1.20627 0.91042 0.87248 0.95054 0.96364 0.93718 0.94377 0.92694 0.92303 0.92079 0.91193 0.89314 0.84884 0.84531 0.82593 0.82736 0.87316 0.87829 0.87358 0.87646 0.91656 0.89882 0.91787 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.43 55.49 0.58 -26.27 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.14 9.88 -15.06 -0.15 -6.29 16 8 H 0.08 2.01 7.22 -52.48 -0.38 1.63 16 9 N -0.59 -14.74 3.35 -163.06 -0.55 -15.29 16 10 C 0.18 4.24 5.46 -1.91 -0.01 4.23 16 11 C -0.14 -2.50 6.54 -25.12 -0.16 -2.67 16 12 C -0.12 -2.20 2.86 -89.35 -0.26 -2.45 16 13 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 14 C 0.13 1.93 5.94 -3.76 -0.02 1.91 16 15 N -0.60 -8.57 3.00 -172.49 -0.52 -9.08 16 16 C 0.55 7.88 6.70 -10.99 -0.07 7.81 16 17 O -0.54 -9.27 16.08 5.56 0.09 -9.19 16 18 C -0.12 -1.30 1.08 -156.81 -0.17 -1.47 16 19 C -0.09 -1.07 4.29 -104.48 -0.45 -1.52 16 20 C -0.06 -0.70 9.65 -39.28 -0.38 -1.08 16 21 C -0.16 -1.75 10.11 -39.44 -0.40 -2.15 16 22 C 0.10 1.10 11.18 -17.54 -0.20 0.90 16 23 N -0.48 -5.97 10.36 -13.25 -0.14 -6.11 16 24 C 0.11 1.17 8.99 -17.55 -0.16 1.01 16 25 C -0.13 -1.20 9.76 -26.69 -0.26 -1.46 16 26 C -0.16 -1.28 9.07 -26.70 -0.24 -1.52 16 27 C 0.11 1.46 6.02 -3.49 -0.02 1.44 16 28 C -0.13 -2.18 5.48 -26.98 -0.15 -2.33 16 29 C 0.17 3.35 2.57 -67.96 -0.17 3.18 16 30 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.05 1.47 7.20 -51.93 -0.37 1.09 16 34 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.16 1.38 6.39 -52.49 -0.34 1.04 16 42 H 0.11 1.05 7.99 -51.93 -0.42 0.64 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.11 0.69 6.64 -51.93 -0.34 0.34 16 45 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.99 3.51 -51.93 -0.18 0.81 16 48 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 49 H 0.08 1.34 7.62 -51.93 -0.40 0.94 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -32.35 381.94 -10.55 -42.90 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.38 Total: 3.06 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.37 Total: -2.73 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.62 Total: -56.75 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.35 -10.55 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036799863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.125 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds