Wall clock time and date at job start Wed Apr 1 2020 00:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00411 * 2 1 4 4 H 1.48504 * 109.47047 * 270.00063 * 3 2 1 5 5 H 1.48497 * 109.47385 * 30.00387 * 3 2 1 6 6 H 1.48503 * 109.47098 * 150.00347 * 3 2 1 7 7 C 1.38819 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99308 * 359.97438 * 7 2 1 10 10 C 1.47208 * 125.89276 * 0.02562 * 9 7 2 11 11 C 1.54724 * 107.24462 * 183.73183 * 10 9 7 12 12 C 1.54203 * 102.06108 * 21.51429 * 11 10 9 13 13 H 1.08999 * 108.73914 * 78.18013 * 12 11 10 14 14 C 1.50940 * 112.77213 * 199.86358 * 12 11 10 15 15 N 1.46714 * 111.14132 * 70.08260 * 14 12 11 16 16 C 1.34776 * 121.35941 * 232.17556 * 15 14 12 17 17 O 1.21283 * 119.99943 * 5.00374 * 16 15 14 18 18 C 1.50697 * 120.00143 * 185.00198 * 16 15 14 19 19 C 1.50708 * 115.55905 * 279.70775 * 18 16 15 20 20 C 1.38673 * 120.41716 * 319.78855 * 19 18 16 21 21 C 1.38628 * 118.41599 * 180.02562 * 20 19 18 22 22 C 1.38228 * 119.16389 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.76389 * 359.97438 * 22 21 20 24 24 C 1.31892 * 121.72304 * 359.70584 * 23 22 21 25 25 C 1.53003 * 117.49931 * 65.39073 * 18 16 15 26 26 C 1.53001 * 60.02775 * 107.50598 * 25 18 16 27 27 C 1.47213 * 117.27882 * 52.45098 * 15 14 12 28 28 C 1.52161 * 107.68421 * 301.93908 * 27 15 14 29 29 C 1.48630 * 125.88578 * 179.97438 * 9 7 2 30 30 H 1.09003 * 112.01284 * 31.87206 * 29 9 7 31 31 H 0.97000 * 119.99602 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.88559 * 303.13587 * 10 9 7 33 33 H 1.08999 * 109.89079 * 64.32276 * 10 9 7 34 34 H 1.09000 * 110.91316 * 263.32675 * 11 10 9 35 35 H 1.08998 * 110.91378 * 139.70193 * 11 10 9 36 36 H 1.09003 * 109.14483 * 309.65314 * 14 12 11 37 37 H 1.08997 * 109.10407 * 190.48381 * 14 12 11 38 38 H 1.07998 * 120.78910 * 0.02957 * 20 19 18 39 39 H 1.08000 * 120.41474 * 179.97438 * 21 20 19 40 40 H 1.07995 * 119.61630 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.61539 * 180.30968 * 24 23 22 42 42 H 1.09000 * 117.49565 * 0.02562 * 25 18 16 43 43 H 1.08996 * 117.49927 * 215.00665 * 25 18 16 44 44 H 1.09000 * 117.49817 * 107.48503 * 26 25 18 45 45 H 1.09008 * 117.49854 * 252.47824 * 26 25 18 46 46 H 1.08997 * 109.80312 * 61.22520 * 27 15 14 47 47 H 1.09002 * 109.79787 * 182.09729 * 27 15 14 48 48 H 1.09001 * 108.53190 * 297.33616 * 28 27 15 49 49 H 1.08994 * 109.32491 * 178.31294 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1389 -2.5390 -0.0005 11 6 -0.4439 -4.0529 0.0956 12 6 0.8642 -4.6077 0.6946 13 1 0.8727 -4.4049 1.7655 14 6 1.0317 -6.0894 0.4604 15 7 1.2931 -6.3753 -0.9546 16 6 0.5600 -7.2789 -1.6347 17 8 -0.3939 -7.8084 -1.1048 18 6 0.9255 -7.6315 -3.0536 19 6 0.4650 -6.6552 -4.1053 20 6 -0.7901 -6.0716 -4.0203 21 6 -1.1714 -5.1798 -5.0107 22 6 -0.2944 -4.9042 -6.0430 23 7 0.8917 -5.4780 -6.0916 24 6 1.2902 -6.3264 -5.1637 25 6 2.2621 -8.3395 -3.2837 26 6 0.9513 -9.1150 -3.4294 27 6 2.3928 -5.6393 -1.5997 28 6 2.0942 -4.1531 -1.4680 29 6 1.9325 -3.7447 -0.0016 30 1 2.8832 -3.7674 0.5312 31 1 -0.4849 0.8401 0.0004 32 1 -0.5652 -2.0197 0.8578 33 1 -0.5533 -2.1353 -0.9243 34 1 -0.6299 -4.4758 -0.8916 35 1 -1.2863 -4.2385 0.7620 36 1 0.1215 -6.6049 0.7671 37 1 1.8670 -6.4530 1.0588 38 1 -1.4545 -6.3064 -3.2019 39 1 -2.1418 -4.7070 -4.9766 40 1 -0.5838 -4.2103 -6.8182 41 1 2.2711 -6.7729 -5.2346 42 1 2.8769 -8.5507 -2.4087 43 1 2.8086 -8.0990 -4.1956 44 1 0.6353 -9.3845 -4.4372 45 1 0.7041 -9.8365 -2.6505 46 1 3.3339 -5.8690 -1.1000 47 1 2.4553 -5.9165 -2.6520 48 1 1.1703 -3.9366 -2.0043 49 1 2.9089 -3.5809 -1.9117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036799864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:54 Heat of formation + Delta-G solvation = 65.922905 kcal Electronic energy + Delta-G solvation = -31458.631705 eV Core-core repulsion = 27580.411087 eV Total energy + Delta-G solvation = -3878.220618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09734 -39.83662 -38.49634 -36.72419 -35.25200 -32.58710 -32.49499 -31.43125 -30.97456 -29.53093 -28.31940 -25.82443 -24.72269 -23.86513 -23.66067 -22.75530 -22.34538 -21.95559 -20.03801 -19.39306 -18.19113 -17.53983 -17.01680 -16.83180 -16.18131 -16.04914 -15.58695 -14.82629 -14.77119 -14.69336 -14.26735 -14.13467 -13.87839 -13.74013 -13.20831 -13.11093 -12.94873 -12.79240 -12.75423 -12.20557 -11.96453 -11.75552 -11.71749 -11.60928 -11.33729 -11.19704 -11.05346 -10.86599 -10.81989 -10.72920 -10.10392 -10.01059 -9.90022 -9.78729 -9.76029 -9.64918 -9.58814 -9.37054 -8.95993 -8.63726 -8.45771 -6.85791 -5.71168 -3.04810 0.95563 1.20381 2.55955 2.95497 3.37497 3.38795 3.43801 3.45746 3.80090 4.13010 4.32977 4.42121 4.47447 4.56780 4.65242 4.86291 4.89532 5.01855 5.12970 5.14309 5.27249 5.30556 5.33388 5.43428 5.45214 5.50496 5.58681 5.60500 5.63365 5.66947 5.80026 5.82021 5.89884 5.97368 6.04634 6.06753 6.14536 6.25415 6.29171 6.37872 6.52310 6.57388 6.59552 6.74843 6.88862 7.05992 7.51355 7.55083 7.63418 7.82591 7.86078 8.20087 8.23785 9.20599 9.80641 10.48513 11.40080 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.004019 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.871536 B = 6965.529111 C = 7993.427044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.180 3.820 11 C -0.134 4.134 12 C -0.114 4.114 13 H 0.081 0.919 14 C 0.126 3.874 15 N -0.593 5.593 16 C 0.557 3.443 17 O -0.541 6.541 18 C -0.112 4.112 19 C -0.092 4.092 20 C -0.059 4.059 21 C -0.162 4.162 22 C 0.097 3.903 23 N -0.480 5.480 24 C 0.101 3.899 25 C -0.160 4.160 26 C -0.133 4.133 27 C 0.108 3.892 28 C -0.142 4.142 29 C 0.168 3.832 30 H 0.060 0.940 31 H 0.251 0.749 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -17.157 -7.733 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.056 3.944 11 C -0.173 4.173 12 C -0.134 4.134 13 H 0.099 0.901 14 C 0.003 3.997 15 N -0.325 5.325 16 C 0.344 3.656 17 O -0.419 6.419 18 C -0.116 4.116 19 C -0.095 4.095 20 C -0.085 4.085 21 C -0.182 4.182 22 C -0.060 4.060 23 N -0.188 5.188 24 C -0.056 4.056 25 C -0.197 4.197 26 C -0.171 4.171 27 C -0.015 4.015 28 C -0.182 4.182 29 C 0.060 3.940 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.374 -16.938 -8.115 18.931 hybrid contribution -0.209 1.029 0.677 1.249 sum 2.165 -15.910 -7.438 17.696 Atomic orbital electron populations 1.69968 1.04874 1.24932 1.57074 1.24779 0.95657 0.97555 1.02372 0.86162 0.78602 0.83715 0.77540 1.21679 1.21732 1.20722 1.19037 0.90354 0.82404 1.43683 0.90544 1.44918 1.01420 0.99349 1.86728 1.21181 0.84249 0.88356 1.00649 1.22750 0.95711 0.99482 0.99336 1.21885 0.97923 0.92646 1.00914 0.90084 1.21012 1.02008 0.96313 0.80345 1.48014 1.33467 1.39210 1.11802 1.19182 0.81988 0.78863 0.85548 1.90682 1.27737 1.53760 1.69706 1.19912 1.04271 0.95055 0.92362 1.19666 0.95416 0.98417 0.95982 1.21484 0.95195 0.93845 0.97969 1.22171 1.01767 0.98835 0.95435 1.22791 0.89238 0.96806 0.97124 1.67723 1.16667 1.07873 1.26541 1.22598 0.99128 0.94203 0.89639 1.23239 0.90045 1.02158 1.04292 1.23089 0.99447 0.91031 1.03490 1.21770 0.88794 0.93121 0.97794 1.22350 1.02508 0.92578 1.00789 1.21122 0.94592 0.86155 0.92156 0.92244 0.93830 0.93167 0.94881 0.92955 0.92472 0.89475 0.91877 0.84787 0.84477 0.82630 0.82814 0.87596 0.87340 0.87747 0.87576 0.91473 0.90221 0.91793 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.35 55.49 0.57 -26.39 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.14 10.31 -15.05 -0.16 -6.30 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.69 2.91 -161.80 -0.47 -15.17 16 10 C 0.18 4.36 5.12 -2.75 -0.01 4.35 16 11 C -0.13 -2.59 5.90 -25.19 -0.15 -2.74 16 12 C -0.11 -1.95 2.89 -90.52 -0.26 -2.21 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.13 1.82 5.84 -4.96 -0.03 1.79 16 15 N -0.59 -8.28 2.80 -174.68 -0.49 -8.77 16 16 C 0.56 7.99 6.13 -10.99 -0.07 7.92 16 17 O -0.54 -9.39 16.47 5.56 0.09 -9.30 16 18 C -0.11 -1.27 1.16 -156.77 -0.18 -1.45 16 19 C -0.09 -1.12 4.72 -104.48 -0.49 -1.61 16 20 C -0.06 -0.77 9.47 -39.28 -0.37 -1.14 16 21 C -0.16 -1.93 10.11 -39.44 -0.40 -2.33 16 22 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 23 N -0.48 -6.25 10.36 -13.25 -0.14 -6.39 16 24 C 0.10 1.18 10.32 -17.55 -0.18 1.00 16 25 C -0.16 -1.31 8.38 -26.73 -0.22 -1.53 16 26 C -0.13 -1.22 9.87 -26.70 -0.26 -1.48 16 27 C 0.11 1.42 6.07 -4.08 -0.02 1.39 16 28 C -0.14 -2.43 5.19 -27.12 -0.14 -2.57 16 29 C 0.17 3.21 3.60 -66.21 -0.24 2.97 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.05 1.36 7.24 -51.93 -0.38 0.98 16 33 H 0.03 0.90 7.67 -51.93 -0.40 0.50 16 34 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.33 7.03 -51.93 -0.37 0.97 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 1.85 7.74 -52.49 -0.41 1.44 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.15 1.39 5.99 -52.48 -0.31 1.07 16 42 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.11 0.69 6.16 -51.93 -0.32 0.37 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.11 1.01 8.14 -51.92 -0.42 0.58 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.95 4.98 -51.93 -0.26 0.69 16 48 H 0.06 1.27 6.97 -51.93 -0.36 0.91 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -32.41 382.24 -10.56 -42.97 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.38 Total: 3.60 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.49 Total: -3.28 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.52 Total: -56.71 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.41 -10.56 -42.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036799864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.896 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds