Wall clock time and date at job start Wed Apr 1 2020 00:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48499 * 109.46835 * 239.99907 * 3 2 1 5 5 H 1.48503 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47005 * 119.99781 * 3 2 1 7 7 C 1.38812 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99669 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00465 * 0.02562 * 7 2 1 10 10 C 1.48156 * 126.40058 * 359.97174 * 9 7 2 11 11 C 1.55288 * 107.21096 * 184.85520 * 10 9 7 12 12 C 1.54250 * 101.60903 * 22.54553 * 11 10 9 13 13 H 1.09006 * 111.33197 * 78.92713 * 12 11 10 14 14 C 1.52235 * 115.41315 * 206.91272 * 12 11 10 15 15 N 1.47715 * 106.36165 * 169.94388 * 14 12 11 16 16 C 1.34772 * 119.69193 * 127.96282 * 15 14 12 17 17 O 1.21289 * 119.99828 * 354.28405 * 16 15 14 18 18 C 1.50703 * 120.00533 * 174.28420 * 16 15 14 19 19 C 1.50696 * 115.54602 * 304.14499 * 18 16 15 20 20 C 1.38671 * 120.42331 * 330.40876 * 19 18 16 21 21 C 1.38626 * 118.42196 * 180.02562 * 20 19 18 22 22 C 1.38222 * 119.16213 * 359.97438 * 21 20 19 23 23 N 1.31856 * 120.76411 * 359.97438 * 22 21 20 24 24 C 1.31885 * 121.72416 * 359.70940 * 23 22 21 25 25 C 1.53000 * 117.49951 * 158.47318 * 18 16 15 26 26 C 1.52995 * 117.49684 * 89.81328 * 18 16 15 27 27 C 1.46600 * 120.62675 * 307.93730 * 15 14 12 28 28 C 1.52272 * 110.69891 * 47.44403 * 27 15 14 29 29 C 1.45466 * 126.40464 * 180.02562 * 9 7 2 30 30 H 1.08996 * 109.27398 * 266.17689 * 29 9 7 31 31 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.92056 * 304.30020 * 10 9 7 33 33 H 1.09002 * 109.92386 * 65.40532 * 10 9 7 34 34 H 1.09000 * 110.95882 * 140.72565 * 11 10 9 35 35 H 1.08998 * 110.95674 * 264.44897 * 11 10 9 36 36 H 1.09003 * 110.06929 * 289.15158 * 14 12 11 37 37 H 1.08998 * 110.06805 * 50.73097 * 14 12 11 38 38 H 1.08004 * 120.78658 * 0.02562 * 20 19 18 39 39 H 1.08001 * 120.41742 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.62236 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.61890 * 180.30989 * 24 23 22 42 42 H 1.09001 * 117.49788 * 0.02562 * 25 18 16 43 43 H 1.08998 * 117.49829 * 145.01922 * 25 18 16 44 44 H 1.08999 * 117.49777 * 214.97829 * 26 18 16 45 45 H 1.09004 * 117.50349 * 359.97438 * 26 18 16 46 46 H 1.09001 * 109.25887 * 168.10696 * 27 15 14 47 47 H 1.08997 * 109.25758 * 287.57954 * 27 15 14 48 48 H 1.08994 * 110.00532 * 189.46614 * 28 27 15 49 49 H 1.08994 * 108.89695 * 68.92594 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1466 -2.5534 0.0006 11 6 -0.4384 -4.0734 0.1261 12 6 0.8684 -4.5887 0.7633 13 1 0.8918 -4.3911 1.8351 14 6 1.2131 -6.0409 0.4636 15 7 2.5922 -6.2502 0.9498 16 6 2.8591 -7.2793 1.7780 17 8 1.9541 -7.9658 2.2033 18 6 4.2818 -7.5773 2.1756 19 6 5.2409 -7.8058 1.0359 20 6 4.7920 -8.3371 -0.1638 21 6 5.7100 -8.5306 -1.1843 22 6 7.0328 -8.1894 -0.9739 23 7 7.4240 -7.6854 0.1800 24 6 6.5775 -7.4820 1.1706 25 6 4.5032 -8.3825 3.4576 26 6 4.8247 -6.8862 3.4280 27 6 3.6735 -5.3493 0.5395 28 6 3.2476 -3.8948 0.6878 29 6 1.9080 -3.7211 0.0016 30 1 1.9900 -4.0787 -1.0248 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5801 -2.0209 0.8472 33 1 -0.5634 -2.1709 -0.9312 34 1 -1.2916 -4.2540 0.7800 35 1 -0.5988 -4.5218 -0.8543 36 1 0.5265 -6.7045 0.9892 37 1 1.1632 -6.2232 -0.6099 38 1 3.7518 -8.5940 -0.2998 39 1 5.3956 -8.9426 -2.1318 40 1 7.7543 -8.3366 -1.7640 41 1 6.9340 -7.0626 2.0998 42 1 3.6198 -8.6971 4.0132 43 1 5.3428 -9.0773 3.4768 44 1 5.8757 -6.5973 3.4278 45 1 4.1530 -6.2157 3.9642 46 1 4.5513 -5.5362 1.1580 47 1 3.9225 -5.5387 -0.5046 48 1 3.9878 -3.2408 0.2269 49 1 3.1539 -3.6608 1.7482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036799865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:57 Heat of formation + Delta-G solvation = 66.874848 kcal Electronic energy + Delta-G solvation = -30884.410844 eV Core-core repulsion = 27006.231505 eV Total energy + Delta-G solvation = -3878.179339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27549 -39.89671 -38.58362 -36.74828 -35.45982 -32.82404 -32.57043 -31.65441 -31.10749 -29.71630 -28.26824 -25.72149 -24.76066 -23.94965 -23.64213 -22.62166 -22.31912 -21.85907 -20.10429 -19.70762 -18.69725 -17.84435 -17.11380 -16.47664 -16.31036 -15.93816 -15.45603 -15.16179 -14.91749 -14.72064 -14.38664 -14.16559 -14.00067 -13.85954 -13.38775 -13.23702 -13.09404 -12.81986 -12.65144 -12.44360 -12.26216 -11.74311 -11.71496 -11.54929 -11.46013 -11.24043 -10.93738 -10.84462 -10.81323 -10.71500 -10.21806 -10.15278 -10.00496 -9.95272 -9.88097 -9.65306 -9.54881 -9.46173 -9.08043 -8.64285 -8.56473 -6.86452 -5.73714 -3.07143 0.77892 1.00468 2.43701 2.89754 3.33920 3.38356 3.42867 3.44083 3.72356 4.01904 4.25765 4.29641 4.44764 4.47336 4.59468 4.67915 4.70172 4.93622 4.99261 5.06602 5.16954 5.23080 5.28696 5.30747 5.40549 5.50528 5.53540 5.56168 5.59441 5.62086 5.77470 5.83263 5.83797 5.86772 5.96355 5.98783 6.11855 6.15212 6.20565 6.31996 6.38776 6.45858 6.58223 6.60479 6.79690 7.02966 7.41279 7.52620 7.58654 7.69000 7.78495 8.13290 8.22120 9.17035 9.80608 10.48506 11.38689 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003361 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.012287 B = 8327.908632 C = 9141.869755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.126 3.874 15 N -0.597 5.597 16 C 0.551 3.449 17 O -0.541 6.541 18 C -0.122 4.122 19 C -0.088 4.088 20 C -0.063 4.063 21 C -0.165 4.165 22 C 0.093 3.907 23 N -0.478 5.478 24 C 0.100 3.900 25 C -0.131 4.131 26 C -0.153 4.153 27 C 0.117 3.883 28 C -0.130 4.130 29 C 0.170 3.830 30 H 0.018 0.982 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.343 -18.022 1.590 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.097 0.903 14 C 0.004 3.996 15 N -0.329 5.329 16 C 0.338 3.662 17 O -0.419 6.419 18 C -0.126 4.126 19 C -0.091 4.091 20 C -0.089 4.089 21 C -0.184 4.184 22 C -0.063 4.063 23 N -0.186 5.186 24 C -0.057 4.057 25 C -0.169 4.169 26 C -0.190 4.190 27 C -0.006 4.006 28 C -0.170 4.170 29 C 0.061 3.939 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.684 -17.881 1.883 20.915 hybrid contribution -0.461 0.845 -0.321 1.015 sum 10.224 -17.036 1.563 19.929 Atomic orbital electron populations 1.69929 1.04892 1.25176 1.56871 1.24786 0.95665 0.97612 1.02243 0.86239 0.78503 0.83377 0.77883 1.21188 1.21599 1.21184 1.18938 0.90300 0.82310 1.43969 0.90476 1.44182 1.01631 0.99421 1.86594 1.21521 0.83903 0.88291 1.01007 1.22785 0.95659 0.99650 0.99263 1.22706 0.97821 0.93168 1.00696 0.90286 1.21633 0.81538 0.97457 0.98969 1.48208 1.10077 1.27687 1.46922 1.19292 0.88460 0.80215 0.78218 1.90682 1.46646 1.50109 1.54450 1.20040 0.93075 1.09833 0.89611 1.19775 0.94552 1.00461 0.94283 1.21425 1.00350 0.95029 0.92122 1.22143 0.94543 1.01585 1.00159 1.22796 0.94518 0.94373 0.94650 1.67740 1.38104 1.12063 1.00697 1.22648 0.88786 0.96310 0.97922 1.23118 1.03953 0.94121 0.95671 1.23237 1.02597 0.96338 0.96793 1.21498 0.88939 0.90225 0.99957 1.21591 0.99580 0.93677 1.02114 1.20580 0.90966 0.87296 0.95035 0.96462 0.93693 0.92735 0.94359 0.91998 0.92345 0.89165 0.91303 0.85124 0.84552 0.82639 0.82619 0.87034 0.87758 0.87236 0.87404 0.90084 0.92283 0.90513 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.43 55.49 0.58 -26.13 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16 8 H 0.08 1.99 7.21 -52.48 -0.38 1.61 16 9 N -0.59 -14.62 3.35 -163.10 -0.55 -15.17 16 10 C 0.18 4.21 5.44 -1.92 -0.01 4.20 16 11 C -0.13 -2.46 6.60 -24.86 -0.16 -2.62 16 12 C -0.12 -2.16 2.84 -89.10 -0.25 -2.41 16 13 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 14 C 0.13 1.87 6.02 -3.77 -0.02 1.85 16 15 N -0.60 -8.37 3.00 -173.52 -0.52 -8.89 16 16 C 0.55 7.73 5.93 -10.99 -0.07 7.66 16 17 O -0.54 -9.19 15.84 5.55 0.09 -9.10 16 18 C -0.12 -1.32 1.32 -156.82 -0.21 -1.53 16 19 C -0.09 -0.91 3.59 -104.48 -0.37 -1.28 16 20 C -0.06 -0.64 9.10 -39.28 -0.36 -1.00 16 21 C -0.16 -1.42 10.11 -39.44 -0.40 -1.82 16 22 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 23 N -0.48 -5.15 10.36 -13.25 -0.14 -5.29 16 24 C 0.10 0.99 10.49 -17.55 -0.18 0.81 16 25 C -0.13 -1.21 9.72 -26.69 -0.26 -1.47 16 26 C -0.15 -1.35 9.16 -26.70 -0.24 -1.60 16 27 C 0.12 1.57 5.10 -4.36 -0.02 1.55 16 28 C -0.13 -2.19 5.36 -27.85 -0.15 -2.34 16 29 C 0.17 3.33 2.58 -67.98 -0.18 3.15 16 30 H 0.02 0.36 7.95 -51.93 -0.41 -0.05 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 33 H 0.04 1.00 7.76 -51.93 -0.40 0.60 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.09 1.38 6.98 -51.93 -0.36 1.01 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.13 1.39 7.43 -52.48 -0.39 1.00 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.16 1.23 5.97 -52.49 -0.31 0.92 16 42 H 0.11 1.14 7.84 -51.93 -0.41 0.73 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.11 0.74 6.13 -51.93 -0.32 0.42 16 45 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 0.98 5.21 -51.93 -0.27 0.70 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 1.32 7.62 -51.93 -0.40 0.92 16 49 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -31.92 380.55 -10.54 -42.46 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.38 Total: 2.37 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.33 Total: -2.75 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.62 Total: -55.47 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.92 -10.54 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036799865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.337 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds