Wall clock time and date at job start Wed Apr 1 2020 01:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47025 * 269.99875 * 3 2 1 5 5 H 1.48497 * 109.46931 * 30.00448 * 3 2 1 6 6 H 1.48502 * 109.46931 * 150.00003 * 3 2 1 7 7 C 1.38813 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99636 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.48152 * 126.40734 * 0.02562 * 9 7 2 11 11 C 1.55288 * 107.04692 * 175.07686 * 10 9 7 12 12 C 1.53753 * 101.84060 * 337.52640 * 11 10 9 13 13 H 1.09001 * 111.30545 * 280.15262 * 12 11 10 14 14 C 1.52233 * 114.74262 * 152.74808 * 12 11 10 15 15 N 1.47718 * 106.36679 * 190.42638 * 14 12 11 16 16 C 1.34776 * 119.68296 * 232.03294 * 15 14 12 17 17 O 1.21513 * 120.00122 * 172.83942 * 16 15 14 18 18 C 1.48175 * 120.00087 * 352.84973 * 16 15 14 19 19 C 1.39306 * 119.72276 * 164.71029 * 18 16 15 20 20 C 1.38588 * 119.06050 * 179.97438 * 19 18 16 21 21 C 1.38629 * 118.48344 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.32006 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.49659 * 188.62105 * 22 21 20 24 24 C 1.52994 * 117.50309 * 119.99982 * 22 21 20 25 25 C 1.38555 * 119.35591 * 359.97438 * 21 20 19 26 26 N 1.31524 * 120.90033 * 359.73869 * 25 21 20 27 27 C 1.46594 * 120.63296 * 52.06284 * 15 14 12 28 28 C 1.53955 * 110.57339 * 312.17146 * 27 15 14 29 29 C 1.45462 * 126.40098 * 179.71828 * 9 7 2 30 30 H 1.09001 * 109.27094 * 93.79846 * 29 9 7 31 31 H 0.96997 * 120.00140 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.92264 * 294.42627 * 10 9 7 33 33 H 1.09000 * 109.91917 * 55.72443 * 10 9 7 34 34 H 1.08999 * 110.95128 * 95.65542 * 11 10 9 35 35 H 1.08993 * 110.95672 * 219.38824 * 11 10 9 36 36 H 1.08996 * 110.06934 * 309.64498 * 14 12 11 37 37 H 1.09005 * 110.06848 * 71.21374 * 14 12 11 38 38 H 1.08005 * 120.47236 * 359.94952 * 19 18 16 39 39 H 1.07998 * 120.75589 * 179.97438 * 20 19 18 40 40 H 1.09004 * 115.54594 * 334.31932 * 22 21 20 41 41 H 1.09003 * 117.49709 * 359.97438 * 23 22 21 42 42 H 1.08999 * 117.49816 * 145.01588 * 23 22 21 43 43 H 1.08999 * 117.50069 * 214.97875 * 24 22 21 44 44 H 1.09003 * 117.49306 * 359.96918 * 24 22 21 45 45 H 1.08000 * 119.54707 * 180.02562 * 25 21 20 46 46 H 1.09000 * 109.25657 * 72.45716 * 27 15 14 47 47 H 1.09003 * 109.25545 * 191.93014 * 27 15 14 48 48 H 1.08996 * 109.88279 * 170.51698 * 28 27 15 49 49 H 1.08998 * 109.88344 * 291.52226 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1468 -2.5534 -0.0005 11 6 -0.4342 -4.0741 -0.1279 12 6 0.8684 -4.5893 -0.7619 13 1 0.8852 -4.4065 -1.8364 14 6 1.2009 -6.0406 -0.4447 15 7 2.5825 -6.2640 -0.9172 16 6 2.8491 -7.3034 -1.7327 17 8 3.9522 -7.4188 -2.2291 18 6 1.7970 -8.3053 -2.0241 19 6 1.9567 -9.1834 -3.0937 20 6 0.9644 -10.1153 -3.3536 21 6 -0.1533 -10.1368 -2.5339 22 6 -1.2577 -11.1326 -2.7792 23 6 -2.5463 -10.9720 -1.9702 24 6 -1.5830 -12.1181 -1.6551 25 6 -0.2453 -9.2341 -1.4868 26 7 0.7140 -8.3636 -1.2592 27 6 3.6665 -5.3663 -0.5072 28 6 3.2477 -3.8956 -0.6857 29 6 1.9077 -3.7210 -0.0068 30 1 1.9940 -4.0807 1.0185 31 1 -0.4850 0.8400 0.0004 32 1 -0.5632 -2.1737 0.9325 33 1 -0.5803 -2.0213 -0.8474 34 1 -0.5952 -4.5237 0.8518 35 1 -1.2855 -4.2563 -0.7836 36 1 1.1408 -6.2117 0.6301 37 1 0.5141 -6.7049 -0.9693 38 1 2.8412 -9.1383 -3.7120 39 1 1.0598 -10.8088 -4.1759 40 1 -1.3482 -11.4909 -3.8047 41 1 -2.5951 -10.1463 -1.2602 42 1 -3.4849 -11.2246 -2.4633 43 1 -1.8879 -13.1248 -1.9409 44 1 -0.9979 -12.0466 -0.7382 45 1 -1.1146 -9.2484 -0.8460 46 1 3.9061 -5.5472 0.5406 47 1 4.5478 -5.5650 -1.1170 48 1 3.9876 -3.2410 -0.2252 49 1 3.1559 -3.6624 -1.7465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036882580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:27 Heat of formation + Delta-G solvation = 77.109886 kcal Electronic energy + Delta-G solvation = -29974.047986 eV Core-core repulsion = 26096.312471 eV Total energy + Delta-G solvation = -3877.735514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15394 -39.73482 -38.26491 -37.37977 -35.28282 -33.04503 -32.52574 -31.90356 -30.97705 -29.46648 -27.99334 -25.80808 -24.64576 -24.26927 -23.22001 -22.73227 -22.35272 -21.14585 -20.32022 -19.86957 -19.27117 -17.52172 -17.35392 -16.51509 -16.09792 -15.72087 -15.30707 -15.14618 -15.06813 -14.91113 -14.46089 -14.07835 -13.90514 -13.75152 -13.57446 -13.18336 -13.05324 -12.79971 -12.44672 -12.20172 -12.15548 -11.92106 -11.62905 -11.47038 -11.41909 -11.32766 -10.88563 -10.78364 -10.75172 -10.56740 -10.26070 -10.09508 -10.04064 -10.00531 -9.80744 -9.75155 -9.57406 -9.14887 -8.89525 -8.58819 -8.40156 -6.79171 -5.68261 -3.00784 0.39286 0.92268 2.60805 3.03718 3.34823 3.42187 3.47341 3.48862 3.67870 3.88400 4.11628 4.34617 4.43473 4.47345 4.52837 4.56155 4.63438 4.94421 4.97499 5.12369 5.17583 5.31804 5.35919 5.41155 5.45820 5.48790 5.55131 5.61676 5.64590 5.69162 5.73821 5.81296 5.88035 5.94481 5.98015 6.16192 6.20188 6.30256 6.31194 6.40053 6.52490 6.56445 6.68139 6.72297 6.95255 7.13991 7.41051 7.55618 7.60023 7.65306 7.84236 8.19916 8.28229 9.23452 9.86936 10.55379 11.44439 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002685 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.993607 B =10425.961692 C =11575.210799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.127 4.127 13 H 0.075 0.925 14 C 0.103 3.897 15 N -0.583 5.583 16 C 0.565 3.435 17 O -0.545 6.545 18 C 0.078 3.922 19 C -0.107 4.107 20 C -0.077 4.077 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.173 4.173 24 C -0.167 4.167 25 C 0.090 3.910 26 N -0.438 5.438 27 C 0.114 3.886 28 C -0.128 4.128 29 C 0.167 3.833 30 H 0.018 0.982 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.162 0.838 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 -24.963 -4.607 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.148 4.148 13 H 0.093 0.907 14 C -0.019 4.019 15 N -0.314 5.314 16 C 0.351 3.649 17 O -0.423 6.423 18 C -0.059 4.059 19 C -0.128 4.128 20 C -0.103 4.103 21 C -0.086 4.086 22 C -0.139 4.139 23 C -0.210 4.210 24 C -0.204 4.204 25 C -0.069 4.069 26 N -0.150 5.150 27 C -0.009 4.009 28 C -0.167 4.167 29 C 0.059 3.941 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.179 0.821 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.272 -24.127 -4.116 24.694 hybrid contribution 0.422 0.464 -0.687 0.931 sum -2.850 -23.663 -4.803 24.313 Atomic orbital electron populations 1.69937 1.04869 1.24943 1.57289 1.24782 0.95681 0.97589 1.02488 0.86154 0.78620 0.83701 0.77527 1.21696 1.21737 1.20723 1.19013 0.90384 0.82355 1.43377 0.90404 1.44214 1.01662 0.99499 1.86530 1.21520 0.83959 0.88354 1.00850 1.22684 0.95657 0.99621 0.99262 1.22635 0.97751 0.94052 1.00318 0.90670 1.22680 0.81437 0.97219 1.00519 1.48173 1.10600 1.26256 1.46332 1.17941 0.86485 0.81359 0.79075 1.90750 1.23346 1.76236 1.51948 1.21231 0.93435 0.96996 0.94224 1.22091 0.99872 0.93827 0.96980 1.21404 0.92296 0.97612 0.99001 1.20336 0.95310 0.96737 0.96216 1.20980 0.95104 0.99950 0.97904 1.23109 0.93655 1.01128 1.03089 1.23064 1.02994 0.95171 0.99122 1.22854 0.97589 0.90669 0.95776 1.67886 1.00678 1.19150 1.27247 1.21714 0.89637 0.89587 0.99963 1.21831 0.99321 0.93621 1.01953 1.20522 0.91244 0.87127 0.95225 0.96454 0.93830 0.94416 0.92860 0.92311 0.92259 0.91365 0.85509 0.83390 0.84100 0.86472 0.87954 0.87991 0.88152 0.88361 0.82078 0.91725 0.89345 0.90561 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.44 55.49 0.58 -26.68 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.19 9.88 -15.06 -0.15 -6.34 16 8 H 0.08 2.09 7.21 -52.48 -0.38 1.71 16 9 N -0.59 -15.15 3.35 -163.46 -0.55 -15.69 16 10 C 0.18 4.31 5.45 -1.92 -0.01 4.30 16 11 C -0.13 -2.48 6.54 -25.13 -0.16 -2.64 16 12 C -0.13 -2.31 2.85 -89.53 -0.26 -2.57 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.10 1.59 5.26 -3.77 -0.02 1.57 16 15 N -0.58 -9.39 3.00 -173.48 -0.52 -9.91 16 16 C 0.57 9.10 7.60 -12.18 -0.09 9.00 16 17 O -0.54 -9.88 15.76 5.35 0.08 -9.80 16 18 C 0.08 1.05 6.45 -83.01 -0.54 0.51 16 19 C -0.11 -1.17 9.63 -39.06 -0.38 -1.55 16 20 C -0.08 -0.65 9.88 -39.31 -0.39 -1.03 16 21 C -0.08 -0.68 5.63 -104.36 -0.59 -1.27 16 22 C -0.12 -0.70 6.06 -91.77 -0.56 -1.26 16 23 C -0.17 -0.87 9.87 -26.73 -0.26 -1.13 16 24 C -0.17 -0.83 10.17 -26.74 -0.27 -1.10 16 25 C 0.09 0.85 10.47 -17.57 -0.18 0.66 16 26 N -0.44 -5.36 6.28 -9.80 -0.06 -5.42 16 27 C 0.11 1.84 6.34 -3.49 -0.02 1.81 16 28 C -0.13 -2.39 5.48 -27.13 -0.15 -2.54 16 29 C 0.17 3.47 2.55 -68.30 -0.17 3.30 16 30 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 34 H 0.06 1.01 8.11 -51.93 -0.42 0.58 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.13 1.83 4.30 -71.52 -0.31 1.53 16 38 H 0.15 1.54 7.72 -52.48 -0.41 1.14 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.50 6.19 -51.93 -0.32 0.18 16 42 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.16 1.16 6.03 -52.49 -0.32 0.84 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 1.43 6.92 -51.93 -0.36 1.07 16 48 H 0.08 1.43 7.62 -51.93 -0.40 1.03 16 49 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -32.62 381.87 -11.48 -44.10 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.45 Total: 0.97 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -4.29 Total: -0.63 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.55 Total: -57.71 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.62 -11.48 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036882580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.211 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds