Wall clock time and date at job start Wed Apr 1 2020 01:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47025 * 269.99875 * 3 2 1 5 5 H 1.48497 * 109.46931 * 30.00448 * 3 2 1 6 6 H 1.48502 * 109.46931 * 150.00003 * 3 2 1 7 7 C 1.38813 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99636 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.48152 * 126.40734 * 0.02562 * 9 7 2 11 11 C 1.55288 * 107.04692 * 175.07686 * 10 9 7 12 12 C 1.53753 * 101.84060 * 337.52640 * 11 10 9 13 13 H 1.09001 * 111.30545 * 280.15262 * 12 11 10 14 14 C 1.52233 * 114.74262 * 152.74808 * 12 11 10 15 15 N 1.47718 * 106.36679 * 190.42638 * 14 12 11 16 16 C 1.34776 * 119.68296 * 232.03294 * 15 14 12 17 17 O 1.21513 * 120.00122 * 172.83942 * 16 15 14 18 18 C 1.48175 * 120.00087 * 352.84973 * 16 15 14 19 19 C 1.39306 * 119.72276 * 164.71029 * 18 16 15 20 20 C 1.38588 * 119.06050 * 179.97438 * 19 18 16 21 21 C 1.38629 * 118.48344 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.32006 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.49659 * 188.62105 * 22 21 20 24 24 C 1.52994 * 117.50309 * 119.99982 * 22 21 20 25 25 C 1.38555 * 119.35591 * 359.97438 * 21 20 19 26 26 N 1.31524 * 120.90033 * 359.73869 * 25 21 20 27 27 C 1.46594 * 120.63296 * 52.06284 * 15 14 12 28 28 C 1.53955 * 110.57339 * 312.17146 * 27 15 14 29 29 C 1.45462 * 126.40098 * 179.71828 * 9 7 2 30 30 H 1.09001 * 109.27094 * 93.79846 * 29 9 7 31 31 H 0.96997 * 120.00140 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.92264 * 294.42627 * 10 9 7 33 33 H 1.09000 * 109.91917 * 55.72443 * 10 9 7 34 34 H 1.08999 * 110.95128 * 95.65542 * 11 10 9 35 35 H 1.08993 * 110.95672 * 219.38824 * 11 10 9 36 36 H 1.08996 * 110.06934 * 309.64498 * 14 12 11 37 37 H 1.09005 * 110.06848 * 71.21374 * 14 12 11 38 38 H 1.08005 * 120.47236 * 359.94952 * 19 18 16 39 39 H 1.07998 * 120.75589 * 179.97438 * 20 19 18 40 40 H 1.09004 * 115.54594 * 334.31932 * 22 21 20 41 41 H 1.09003 * 117.49709 * 359.97438 * 23 22 21 42 42 H 1.08999 * 117.49816 * 145.01588 * 23 22 21 43 43 H 1.08999 * 117.50069 * 214.97875 * 24 22 21 44 44 H 1.09003 * 117.49306 * 359.96918 * 24 22 21 45 45 H 1.08000 * 119.54707 * 180.02562 * 25 21 20 46 46 H 1.09000 * 109.25657 * 72.45716 * 27 15 14 47 47 H 1.09003 * 109.25545 * 191.93014 * 27 15 14 48 48 H 1.08996 * 109.88279 * 170.51698 * 28 27 15 49 49 H 1.08998 * 109.88344 * 291.52226 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1468 -2.5534 -0.0005 11 6 -0.4342 -4.0741 -0.1279 12 6 0.8684 -4.5893 -0.7619 13 1 0.8852 -4.4065 -1.8364 14 6 1.2009 -6.0406 -0.4447 15 7 2.5825 -6.2640 -0.9172 16 6 2.8491 -7.3034 -1.7327 17 8 3.9522 -7.4188 -2.2291 18 6 1.7970 -8.3053 -2.0241 19 6 1.9567 -9.1834 -3.0937 20 6 0.9644 -10.1153 -3.3536 21 6 -0.1533 -10.1368 -2.5339 22 6 -1.2577 -11.1326 -2.7792 23 6 -2.5463 -10.9720 -1.9702 24 6 -1.5830 -12.1181 -1.6551 25 6 -0.2453 -9.2341 -1.4868 26 7 0.7140 -8.3636 -1.2592 27 6 3.6665 -5.3663 -0.5072 28 6 3.2477 -3.8956 -0.6857 29 6 1.9077 -3.7210 -0.0068 30 1 1.9940 -4.0807 1.0185 31 1 -0.4850 0.8400 0.0004 32 1 -0.5632 -2.1737 0.9325 33 1 -0.5803 -2.0213 -0.8474 34 1 -0.5952 -4.5237 0.8518 35 1 -1.2855 -4.2563 -0.7836 36 1 1.1408 -6.2117 0.6301 37 1 0.5141 -6.7049 -0.9693 38 1 2.8412 -9.1383 -3.7120 39 1 1.0598 -10.8088 -4.1759 40 1 -1.3482 -11.4909 -3.8047 41 1 -2.5951 -10.1463 -1.2602 42 1 -3.4849 -11.2246 -2.4633 43 1 -1.8879 -13.1248 -1.9409 44 1 -0.9979 -12.0466 -0.7382 45 1 -1.1146 -9.2484 -0.8460 46 1 3.9061 -5.5472 0.5406 47 1 4.5478 -5.5650 -1.1170 48 1 3.9876 -3.2410 -0.2252 49 1 3.1559 -3.6624 -1.7465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036882580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:26 Heat of formation + Delta-G solvation = 59.287510 kcal Electronic energy + Delta-G solvation = -29974.820822 eV Core-core repulsion = 26096.312471 eV Total energy + Delta-G solvation = -3878.508351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11686 -40.88991 -39.66479 -37.95506 -36.82000 -34.43962 -33.96561 -33.11163 -32.00506 -31.19504 -29.59846 -27.05964 -26.16889 -25.16202 -24.52247 -23.72128 -23.09707 -22.03939 -21.71673 -21.34541 -20.69099 -18.76699 -18.33671 -18.09926 -17.11377 -16.86318 -16.70687 -16.35376 -16.12679 -15.88233 -15.71581 -15.62335 -15.10428 -14.92119 -14.69974 -14.54468 -14.37699 -13.98774 -13.80711 -13.66664 -13.20607 -13.11759 -12.98747 -12.71641 -12.68885 -12.48488 -12.27023 -12.12973 -12.02600 -11.94966 -11.77855 -11.62429 -11.47079 -11.38737 -11.25008 -11.17023 -10.75367 -10.71540 -10.00967 -9.91065 -9.64795 -8.86854 -7.84030 -5.18055 -0.43444 0.20095 1.44414 1.46042 1.54406 1.57939 1.86000 2.49465 2.64243 2.96281 3.12822 3.34099 3.47112 3.51340 3.60587 3.85532 3.85833 3.90972 3.97612 4.03931 4.06966 4.15849 4.18780 4.23711 4.32898 4.35579 4.42952 4.50106 4.66897 4.70516 4.74348 4.83862 4.87066 4.90627 4.94632 5.03418 5.08227 5.10992 5.11802 5.13623 5.17634 5.31432 5.32844 5.45420 5.51510 5.53531 5.66683 5.69542 5.78500 6.21037 6.25807 6.64079 7.01104 7.10055 7.79516 8.48029 9.27701 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002685 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.993607 B =10425.961692 C =11575.210799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.115 4.115 12 C -0.112 4.112 13 H 0.057 0.943 14 C 0.116 3.884 15 N -0.590 5.590 16 C 0.562 3.438 17 O -0.574 6.574 18 C 0.048 3.952 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.071 4.071 22 C -0.129 4.129 23 C -0.172 4.172 24 C -0.162 4.162 25 C 0.084 3.916 26 N -0.455 5.455 27 C 0.122 3.878 28 C -0.119 4.119 29 C 0.157 3.843 30 H 0.020 0.980 31 H 0.246 0.754 32 H 0.005 0.995 33 H 0.016 0.984 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.173 0.827 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.184 0.816 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 -27.995 -4.957 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.154 4.154 12 C -0.133 4.133 13 H 0.076 0.924 14 C -0.005 4.005 15 N -0.320 5.320 16 C 0.351 3.649 17 O -0.454 6.454 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.097 4.097 21 C -0.073 4.073 22 C -0.147 4.147 23 C -0.209 4.209 24 C -0.199 4.199 25 C -0.075 4.075 26 N -0.167 5.167 27 C -0.001 4.001 28 C -0.158 4.158 29 C 0.050 3.950 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.191 0.809 40 H 0.151 0.849 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.201 0.799 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.002 -27.195 -4.464 27.848 hybrid contribution 0.599 1.283 -0.595 1.535 sum -3.403 -25.913 -5.059 26.620 Atomic orbital electron populations 1.70154 1.06209 1.25109 1.58694 1.25603 0.96588 1.00847 1.03103 0.85138 0.77747 0.79516 0.77338 1.21574 1.22079 1.19393 1.19382 0.90903 0.83597 1.42184 0.90019 1.44509 1.02465 1.00668 1.86389 1.21323 0.83382 0.91995 0.97595 1.22546 0.96629 0.95102 1.01123 1.22501 0.96449 0.95568 0.98772 0.92428 1.22672 0.81518 0.95025 1.01307 1.48232 1.10646 1.26439 1.46665 1.18404 0.86882 0.81537 0.78105 1.90718 1.24755 1.77013 1.52905 1.20889 0.93855 0.97819 0.96203 1.22185 1.00638 0.93973 0.96352 1.21750 0.91309 0.97061 0.99622 1.20633 0.95601 0.96133 0.94938 1.21071 0.94713 0.99875 0.99086 1.23217 0.93763 1.01134 1.02774 1.23123 1.02593 0.95798 0.98369 1.23271 0.97365 0.90330 0.96508 1.67642 1.00947 1.20597 1.27484 1.21584 0.89788 0.87808 1.00915 1.21711 0.98179 0.95572 1.00344 1.20737 0.93025 0.85449 0.95818 0.96244 0.94515 0.97635 0.96540 0.90093 0.89955 0.90398 0.83856 0.83542 0.80935 0.84920 0.87899 0.86883 0.86819 0.88882 0.79915 0.90163 0.89412 0.90995 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 10.44 21.65 0.23 -58.19 16 2 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.95 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.23 -13.18 9.88 84.03 0.83 -12.35 16 8 H 0.08 4.46 7.21 -2.91 -0.02 4.44 16 9 N -0.62 -32.23 3.35 -671.06 -2.25 -34.48 16 10 C 0.18 9.12 5.45 86.85 0.47 9.60 16 11 C -0.12 -4.19 6.54 31.63 0.21 -3.98 16 12 C -0.11 -4.03 2.85 -10.09 -0.03 -4.06 16 13 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 14 C 0.12 3.40 5.26 85.89 0.45 3.86 16 15 N -0.59 -18.59 3.00 -821.07 -2.46 -21.05 16 16 C 0.56 17.91 7.60 86.88 0.66 18.57 16 17 O -0.57 -20.94 15.76 -3.76 -0.06 -21.00 16 18 C 0.05 1.24 6.45 41.91 0.27 1.51 16 19 C -0.11 -2.26 9.63 22.61 0.22 -2.04 16 20 C -0.07 -0.99 9.88 22.45 0.22 -0.77 16 21 C -0.07 -0.92 5.63 -19.69 -0.11 -1.04 16 22 C -0.13 -1.01 6.06 -11.54 -0.07 -1.08 16 23 C -0.17 -1.10 9.87 30.59 0.30 -0.80 16 24 C -0.16 -1.04 10.17 30.59 0.31 -0.73 16 25 C 0.08 1.36 10.47 84.81 0.89 2.25 16 26 N -0.46 -10.24 6.28 -184.91 -1.16 -11.40 16 27 C 0.12 3.90 6.34 86.68 0.55 4.45 16 28 C -0.12 -4.49 5.48 30.34 0.17 -4.33 16 29 C 0.16 6.55 2.55 45.31 0.12 6.67 16 30 H 0.02 0.84 7.89 -2.39 -0.02 0.82 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.01 0.30 7.77 -2.38 -0.02 0.28 16 33 H 0.02 0.93 7.21 -2.39 -0.02 0.91 16 34 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 37 H 0.14 3.86 4.30 -41.07 -0.18 3.68 16 38 H 0.15 2.95 7.72 -2.91 -0.02 2.92 16 39 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.65 6.19 -2.39 -0.01 0.64 16 42 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.18 2.01 6.03 -2.91 -0.02 2.00 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.09 2.84 6.92 -2.39 -0.02 2.83 16 48 H 0.07 2.74 7.62 -2.39 -0.02 2.72 16 49 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 Total: -1.00 -73.71 381.87 3.03 -70.68 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.79 Total: 14.31 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.92 Total: 12.17 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -5.65 Total: -125.12 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.06 Total: -21.00 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -73.71 3.03 -70.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036882580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.971 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds