Wall clock time and date at job start Wed Apr 1 2020 01:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47503 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47213 * 300.00484 * 3 2 1 6 6 H 1.48501 * 109.46885 * 60.00260 * 3 2 1 7 7 C 1.38819 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00059 * 180.68807 * 7 2 1 9 9 N 1.36936 * 119.99677 * 0.68813 * 7 2 1 10 10 C 1.44788 * 120.17814 * 214.57974 * 9 7 2 11 11 C 1.51517 * 112.22172 * 264.53168 * 10 9 7 12 12 C 1.51312 * 113.25133 * 285.36978 * 11 10 9 13 13 H 1.09003 * 111.31373 * 185.23764 * 12 11 10 14 14 C 1.54721 * 106.48062 * 307.65742 * 12 11 10 15 15 C 1.54623 * 104.28555 * 88.99551 * 14 12 11 16 16 C 1.50867 * 105.21639 * 11.53766 * 15 14 12 17 17 H 1.09004 * 105.90066 * 122.36497 * 16 15 14 18 18 C 1.49812 * 120.18257 * 34.55074 * 9 7 2 19 19 N 1.48065 * 109.90472 * 8.03764 * 16 15 14 20 20 C 1.34774 * 127.83503 * 155.16027 * 19 16 15 21 21 O 1.21285 * 119.99454 * 184.55216 * 20 19 16 22 22 C 1.50701 * 120.00417 * 4.55476 * 20 19 16 23 23 C 1.50696 * 115.54944 * 85.42137 * 22 20 19 24 24 C 1.38227 * 119.62019 * 20.91663 * 23 22 20 25 25 C 1.38628 * 119.16123 * 180.02562 * 24 23 22 26 26 C 1.38672 * 118.42179 * 359.97438 * 25 24 23 27 27 C 1.38182 * 119.16341 * 359.97438 * 26 25 24 28 28 N 1.31853 * 119.61817 * 200.89633 * 23 22 20 29 29 C 1.52994 * 117.51652 * 231.11975 * 22 20 19 30 30 C 1.52998 * 117.49907 * 299.75012 * 22 20 19 31 31 H 0.96993 * 120.00545 * 359.97438 * 1 2 3 32 32 H 1.09007 * 108.93360 * 143.82521 * 10 9 7 33 33 H 1.09000 * 108.93165 * 25.23811 * 10 9 7 34 34 H 1.08998 * 108.72717 * 164.39315 * 11 10 9 35 35 H 1.09005 * 108.72466 * 46.33680 * 11 10 9 36 36 H 1.08998 * 110.45712 * 207.83740 * 14 12 11 37 37 H 1.08996 * 110.45692 * 330.39741 * 14 12 11 38 38 H 1.09005 * 110.16789 * 252.67705 * 15 14 12 39 39 H 1.09004 * 110.53500 * 130.58860 * 15 14 12 40 40 H 1.09001 * 109.55184 * 270.58273 * 18 9 7 41 41 H 1.09001 * 109.54446 * 30.85813 * 18 9 7 42 42 H 1.08000 * 120.42275 * 359.97438 * 24 23 22 43 43 H 1.08007 * 120.78503 * 179.72582 * 25 24 23 44 44 H 1.07995 * 120.42017 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.61578 * 180.02562 * 27 26 25 46 46 H 1.09006 * 117.50071 * 214.96800 * 29 22 20 47 47 H 1.08998 * 117.50539 * 359.97438 * 29 22 20 48 48 H 1.08999 * 117.49724 * 359.97289 * 30 22 20 49 49 H 1.08996 * 117.50232 * 144.99286 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 0.0107 9 7 1.3257 -2.3880 -0.0153 10 6 1.8469 -3.5382 0.6931 11 6 2.6461 -4.4543 -0.2111 12 6 1.7824 -5.2751 -1.1438 13 1 2.3798 -5.9870 -1.7133 14 6 0.7266 -5.9791 -0.2586 15 6 -0.4465 -4.9740 -0.1915 16 6 -0.1357 -3.9323 -1.2377 17 1 -0.9880 -3.9281 -1.9173 18 6 0.0331 -2.5022 -0.7640 19 7 1.0322 -4.3584 -2.0419 20 6 1.3468 -3.9932 -3.3005 21 8 2.3004 -4.4952 -3.8570 22 6 0.5138 -2.9613 -4.0163 23 6 0.8901 -1.5260 -3.7532 24 6 2.1542 -1.2266 -3.2810 25 6 2.4900 0.0969 -3.0417 26 6 1.5376 1.0744 -3.2880 27 6 0.2946 0.6994 -3.7609 28 7 0.0097 -0.5701 -3.9766 29 6 0.0016 -3.3124 -5.4145 30 6 -0.9680 -3.2751 -4.2316 31 1 -0.4850 0.8399 0.0004 32 1 1.0143 -4.0990 1.1180 33 1 2.4889 -3.1932 1.5036 34 1 3.2340 -5.1316 0.4083 35 1 3.3282 -3.8489 -0.8080 36 1 0.4052 -6.9133 -0.7190 37 1 1.1267 -6.1627 0.7385 38 1 -0.4926 -4.5155 0.7963 39 1 -1.3892 -5.4707 -0.4211 40 1 -0.7941 -2.2342 -0.1067 41 1 0.0493 -1.8323 -1.6237 42 1 2.8710 -2.0139 -3.0999 43 1 3.4687 0.3602 -2.6685 44 1 1.7649 2.1156 -3.1133 45 1 -0.4524 1.4546 -3.9556 46 1 -0.0634 -2.5052 -6.1442 47 1 0.2673 -4.2898 -5.8172 48 1 -1.3404 -4.2282 -3.8559 49 1 -1.6709 -2.4435 -4.1829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039375259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:23 Heat of formation + Delta-G solvation = 84.242621 kcal Electronic energy + Delta-G solvation = -33557.512890 eV Core-core repulsion = 29680.086674 eV Total energy + Delta-G solvation = -3877.426216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72545 -39.47598 -38.05447 -36.02630 -34.49218 -32.56874 -31.70749 -31.15351 -31.03068 -30.45413 -27.01908 -25.84940 -24.78528 -23.80885 -22.91516 -22.55393 -22.04373 -20.90234 -20.42760 -19.25254 -18.22652 -17.19049 -16.40470 -16.05815 -15.57027 -15.46092 -15.29519 -15.03515 -14.61179 -14.27487 -13.87938 -13.48591 -13.32321 -13.14590 -12.96827 -12.92514 -12.72037 -12.43260 -12.33408 -12.08797 -11.67291 -11.53066 -11.33942 -11.23809 -11.12991 -10.84900 -10.77940 -10.72206 -10.50378 -10.42439 -10.31662 -10.11465 -10.01802 -9.73093 -9.37047 -9.21254 -9.01589 -8.82644 -8.45658 -8.10452 -8.03351 -6.51509 -5.74392 -3.23365 1.77200 2.02465 2.97504 3.27189 3.33730 3.38691 3.41423 3.94731 4.46573 4.56424 4.67535 4.71507 4.93954 4.99364 5.06337 5.19965 5.25989 5.45301 5.46371 5.47449 5.59510 5.64691 5.73676 5.75681 5.79278 5.82486 5.86390 5.91854 5.96939 6.05988 6.09724 6.14203 6.24497 6.26923 6.38833 6.42119 6.47179 6.47722 6.56095 6.61479 6.76349 6.80332 6.85257 6.93099 7.08600 7.35628 7.43908 7.61719 7.84125 8.11625 8.50648 8.60461 8.63241 9.24861 9.88546 10.47595 11.33179 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.007727 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.653479 B = 3622.769662 C = 5053.055890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.028 3.972 3 Si 0.872 3.128 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.296 1.296 7 C -0.246 4.246 8 H 0.054 0.946 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.156 4.156 12 C 0.139 3.861 13 H 0.083 0.917 14 C -0.125 4.125 15 C -0.119 4.119 16 C 0.105 3.895 17 H 0.055 0.945 18 C 0.171 3.829 19 N -0.585 5.585 20 C 0.585 3.415 21 O -0.554 6.554 22 C -0.099 4.099 23 C 0.175 3.825 24 C -0.116 4.116 25 C -0.053 4.053 26 C -0.167 4.167 27 C 0.105 3.895 28 N -0.478 5.478 29 C -0.135 4.135 30 C -0.144 4.144 31 H 0.250 0.750 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.145 0.855 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.996 -6.400 -4.574 8.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.171 4.171 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.224 1.224 7 C -0.376 4.376 8 H 0.071 0.929 9 N -0.308 5.308 10 C 0.020 3.980 11 C -0.197 4.197 12 C 0.036 3.964 13 H 0.101 0.899 14 C -0.163 4.163 15 C -0.157 4.157 16 C 0.001 3.999 17 H 0.073 0.927 18 C 0.046 3.954 19 N -0.316 5.316 20 C 0.372 3.628 21 O -0.433 6.433 22 C -0.103 4.103 23 C 0.038 3.962 24 C -0.136 4.136 25 C -0.079 4.079 26 C -0.187 4.187 27 C -0.052 4.052 28 N -0.187 5.187 29 C -0.173 4.173 30 C -0.181 4.181 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.162 0.838 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.113 0.887 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.425 -6.689 -5.285 8.863 hybrid contribution 1.448 1.408 0.707 2.140 sum -0.977 -5.280 -4.577 7.056 Atomic orbital electron populations 1.69889 1.04942 1.24820 1.54333 1.25055 0.95086 0.97177 0.99812 0.86852 0.79564 0.85743 0.77595 1.20626 1.20071 1.22381 1.18908 0.89575 0.83272 1.45830 0.92879 1.43971 1.23300 1.07114 1.56460 1.20269 0.95969 0.89132 0.92667 1.22152 0.99381 0.99149 0.99017 1.21699 0.93453 0.91307 0.89899 0.89912 1.22657 0.95855 0.97705 1.00122 1.21949 0.97649 0.95820 1.00315 1.21740 0.87289 0.97593 0.93251 0.92721 1.21534 0.89017 0.88345 0.96495 1.48842 1.26085 1.45073 1.11621 1.18570 0.83701 0.80995 0.79509 1.90649 1.29807 1.56486 1.66310 1.19765 0.98073 0.91154 1.01325 1.19234 0.89897 0.91084 0.95989 1.21489 0.97015 0.96920 0.98137 1.21198 0.99223 0.92745 0.94784 1.22007 0.95464 1.00231 1.01010 1.22246 0.94824 0.92205 0.95937 1.67059 1.34047 1.00675 1.16958 1.23002 1.01391 1.03056 0.89887 1.23074 0.90881 1.03342 1.00822 0.93919 0.94163 0.93751 0.92635 0.92335 0.91889 0.90076 0.89443 0.91514 0.93443 0.90467 0.86112 0.86076 0.85822 0.83805 0.87863 0.88323 0.88717 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 10.93 55.49 0.61 -23.15 16 2 C 0.03 0.72 4.78 -17.43 -0.08 0.63 16 3 Si 0.87 20.29 26.45 -169.99 -4.50 15.79 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -5.96 5.10 56.52 0.29 -5.67 16 6 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 7 C -0.25 -6.19 8.61 -15.06 -0.13 -6.32 16 8 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16 9 N -0.59 -13.28 2.88 -173.55 -0.50 -13.78 16 10 C 0.15 2.87 5.35 -5.71 -0.03 2.84 16 11 C -0.16 -2.73 5.01 -28.33 -0.14 -2.87 16 12 C 0.14 2.29 3.85 -66.69 -0.26 2.04 16 13 H 0.08 1.37 7.97 -51.93 -0.41 0.96 16 14 C -0.13 -1.66 6.04 -24.97 -0.15 -1.81 16 15 C -0.12 -1.73 5.80 -26.95 -0.16 -1.89 16 16 C 0.11 1.86 2.10 -68.85 -0.14 1.72 16 17 H 0.05 0.93 5.55 -51.93 -0.29 0.65 16 18 C 0.17 3.71 4.43 -2.91 -0.01 3.70 16 19 N -0.58 -10.66 2.63 -157.72 -0.41 -11.08 16 20 C 0.58 11.47 5.60 -10.99 -0.06 11.41 16 21 O -0.55 -12.16 17.35 5.55 0.10 -12.06 16 22 C -0.10 -1.79 1.56 -156.82 -0.25 -2.04 16 23 C 0.18 3.45 4.12 -82.59 -0.34 3.11 16 24 C -0.12 -2.38 8.63 -39.44 -0.34 -2.72 16 25 C -0.05 -1.05 7.67 -39.28 -0.30 -1.35 16 26 C -0.17 -3.12 8.21 -39.44 -0.32 -3.44 16 27 C 0.11 1.93 11.18 -17.55 -0.20 1.73 16 28 N -0.48 -9.19 9.37 -9.48 -0.09 -9.28 16 29 C -0.14 -2.05 9.89 -26.73 -0.26 -2.31 16 30 C -0.14 -2.20 8.20 -26.73 -0.22 -2.42 16 31 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.04 0.72 3.92 -51.93 -0.20 0.52 16 33 H 0.04 0.90 7.96 -51.93 -0.41 0.49 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.97 7.38 -51.93 -0.38 0.59 16 38 H 0.09 1.34 6.13 -51.93 -0.32 1.02 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 41 H 0.08 1.82 4.60 -51.93 -0.24 1.58 16 42 H 0.12 2.66 7.06 -52.49 -0.37 2.29 16 43 H 0.12 2.25 7.87 -52.48 -0.41 1.84 16 44 H 0.12 2.13 6.82 -52.49 -0.36 1.78 16 45 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 46 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.09 1.32 7.32 -51.93 -0.38 0.94 16 49 H 0.12 1.82 7.61 -51.93 -0.40 1.43 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -28.93 360.70 -9.94 -38.88 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.18 Total: 9.24 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -3.40 Total: 0.01 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.40 Total: -57.29 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.10 Total: -12.06 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.50 Total: 15.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.93 -9.94 -38.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039375259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.121 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds