Wall clock time and date at job start Wed Apr 1 2020 01:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47503 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47213 * 300.00484 * 3 2 1 6 6 H 1.48501 * 109.46885 * 60.00260 * 3 2 1 7 7 C 1.38819 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00059 * 180.68807 * 7 2 1 9 9 N 1.36936 * 119.99677 * 0.68813 * 7 2 1 10 10 C 1.44788 * 120.17814 * 214.57974 * 9 7 2 11 11 C 1.51517 * 112.22172 * 264.53168 * 10 9 7 12 12 C 1.51312 * 113.25133 * 285.36978 * 11 10 9 13 13 H 1.09003 * 111.31373 * 185.23764 * 12 11 10 14 14 C 1.54721 * 106.48062 * 307.65742 * 12 11 10 15 15 C 1.54623 * 104.28555 * 88.99551 * 14 12 11 16 16 C 1.50867 * 105.21639 * 11.53766 * 15 14 12 17 17 H 1.09004 * 105.90066 * 122.36497 * 16 15 14 18 18 C 1.49812 * 120.18257 * 34.55074 * 9 7 2 19 19 N 1.48065 * 109.90472 * 8.03764 * 16 15 14 20 20 C 1.34774 * 127.83503 * 155.16027 * 19 16 15 21 21 O 1.21285 * 119.99454 * 184.55216 * 20 19 16 22 22 C 1.50701 * 120.00417 * 4.55476 * 20 19 16 23 23 C 1.50696 * 115.54944 * 85.42137 * 22 20 19 24 24 C 1.38227 * 119.62019 * 20.91663 * 23 22 20 25 25 C 1.38628 * 119.16123 * 180.02562 * 24 23 22 26 26 C 1.38672 * 118.42179 * 359.97438 * 25 24 23 27 27 C 1.38182 * 119.16341 * 359.97438 * 26 25 24 28 28 N 1.31853 * 119.61817 * 200.89633 * 23 22 20 29 29 C 1.52994 * 117.51652 * 231.11975 * 22 20 19 30 30 C 1.52998 * 117.49907 * 299.75012 * 22 20 19 31 31 H 0.96993 * 120.00545 * 359.97438 * 1 2 3 32 32 H 1.09007 * 108.93360 * 143.82521 * 10 9 7 33 33 H 1.09000 * 108.93165 * 25.23811 * 10 9 7 34 34 H 1.08998 * 108.72717 * 164.39315 * 11 10 9 35 35 H 1.09005 * 108.72466 * 46.33680 * 11 10 9 36 36 H 1.08998 * 110.45712 * 207.83740 * 14 12 11 37 37 H 1.08996 * 110.45692 * 330.39741 * 14 12 11 38 38 H 1.09005 * 110.16789 * 252.67705 * 15 14 12 39 39 H 1.09004 * 110.53500 * 130.58860 * 15 14 12 40 40 H 1.09001 * 109.55184 * 270.58273 * 18 9 7 41 41 H 1.09001 * 109.54446 * 30.85813 * 18 9 7 42 42 H 1.08000 * 120.42275 * 359.97438 * 24 23 22 43 43 H 1.08007 * 120.78503 * 179.72582 * 25 24 23 44 44 H 1.07995 * 120.42017 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.61578 * 180.02562 * 27 26 25 46 46 H 1.09006 * 117.50071 * 214.96800 * 29 22 20 47 47 H 1.08998 * 117.50539 * 359.97438 * 29 22 20 48 48 H 1.08999 * 117.49724 * 359.97289 * 30 22 20 49 49 H 1.08996 * 117.50232 * 144.99286 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 0.0107 9 7 1.3257 -2.3880 -0.0153 10 6 1.8469 -3.5382 0.6931 11 6 2.6461 -4.4543 -0.2111 12 6 1.7824 -5.2751 -1.1438 13 1 2.3798 -5.9870 -1.7133 14 6 0.7266 -5.9791 -0.2586 15 6 -0.4465 -4.9740 -0.1915 16 6 -0.1357 -3.9323 -1.2377 17 1 -0.9880 -3.9281 -1.9173 18 6 0.0331 -2.5022 -0.7640 19 7 1.0322 -4.3584 -2.0419 20 6 1.3468 -3.9932 -3.3005 21 8 2.3004 -4.4952 -3.8570 22 6 0.5138 -2.9613 -4.0163 23 6 0.8901 -1.5260 -3.7532 24 6 2.1542 -1.2266 -3.2810 25 6 2.4900 0.0969 -3.0417 26 6 1.5376 1.0744 -3.2880 27 6 0.2946 0.6994 -3.7609 28 7 0.0097 -0.5701 -3.9766 29 6 0.0016 -3.3124 -5.4145 30 6 -0.9680 -3.2751 -4.2316 31 1 -0.4850 0.8399 0.0004 32 1 1.0143 -4.0990 1.1180 33 1 2.4889 -3.1932 1.5036 34 1 3.2340 -5.1316 0.4083 35 1 3.3282 -3.8489 -0.8080 36 1 0.4052 -6.9133 -0.7190 37 1 1.1267 -6.1627 0.7385 38 1 -0.4926 -4.5155 0.7963 39 1 -1.3892 -5.4707 -0.4211 40 1 -0.7941 -2.2342 -0.1067 41 1 0.0493 -1.8323 -1.6237 42 1 2.8710 -2.0139 -3.0999 43 1 3.4687 0.3602 -2.6685 44 1 1.7649 2.1156 -3.1133 45 1 -0.4524 1.4546 -3.9556 46 1 -0.0634 -2.5052 -6.1442 47 1 0.2673 -4.2898 -5.8172 48 1 -1.3404 -4.2282 -3.8559 49 1 -1.6709 -2.4435 -4.1829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039375259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:22 Heat of formation + Delta-G solvation = 68.010996 kcal Electronic energy + Delta-G solvation = -33558.216746 eV Core-core repulsion = 29680.086674 eV Total energy + Delta-G solvation = -3878.130072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15629 -40.91899 -39.53470 -37.42910 -36.23271 -34.08746 -33.21956 -32.85227 -32.47021 -31.92050 -28.67978 -27.32929 -26.23080 -25.54173 -24.41330 -23.96866 -23.34664 -22.27389 -21.90160 -20.77976 -19.66452 -18.77247 -18.03304 -17.62689 -17.05684 -16.88778 -16.76930 -16.73380 -16.04402 -15.84779 -15.41574 -15.02788 -14.93383 -14.57796 -14.47682 -14.36190 -14.14590 -13.93859 -13.85520 -13.54592 -13.24499 -13.03037 -12.83859 -12.77694 -12.54896 -12.41729 -12.33823 -12.26491 -12.04582 -11.83177 -11.72799 -11.71162 -11.54621 -11.37832 -10.85522 -10.69369 -10.57512 -10.38820 -10.31662 -9.58257 -9.52197 -8.38841 -7.70881 -5.20508 0.28200 0.48873 1.38462 1.47817 1.47953 1.49964 1.96662 2.56132 2.61329 3.13003 3.28430 3.35864 3.48605 3.61731 3.64951 3.78663 3.89966 3.98367 4.03120 4.08066 4.11365 4.20677 4.30911 4.35424 4.40799 4.49884 4.54414 4.65734 4.66820 4.74291 4.76938 4.86170 4.91095 4.95717 4.98598 5.05207 5.11611 5.15574 5.20885 5.24432 5.28201 5.31607 5.40248 5.44060 5.58782 5.69801 5.81530 5.84519 5.89317 6.54365 6.65508 7.10578 7.15232 7.33191 8.02598 8.56370 9.33407 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.007727 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.653479 B = 3622.769662 C = 5053.055890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.249 1.249 6 H -0.311 1.311 7 C -0.244 4.244 8 H 0.031 0.969 9 N -0.597 5.597 10 C 0.144 3.856 11 C -0.144 4.144 12 C 0.130 3.870 13 H 0.083 0.917 14 C -0.111 4.111 15 C -0.116 4.116 16 C 0.108 3.892 17 H 0.064 0.936 18 C 0.181 3.819 19 N -0.585 5.585 20 C 0.581 3.419 21 O -0.586 6.586 22 C -0.130 4.130 23 C 0.178 3.822 24 C -0.135 4.135 25 C -0.063 4.063 26 C -0.174 4.174 27 C 0.102 3.898 28 N -0.483 5.483 29 C -0.119 4.119 30 C -0.125 4.125 31 H 0.244 0.756 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.016 0.984 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.175 0.825 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -7.873 -4.811 9.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.174 1.174 6 H -0.240 1.240 7 C -0.375 4.375 8 H 0.049 0.951 9 N -0.321 5.321 10 C 0.017 3.983 11 C -0.184 4.184 12 C 0.028 3.972 13 H 0.101 0.899 14 C -0.149 4.149 15 C -0.154 4.154 16 C 0.004 3.996 17 H 0.083 0.917 18 C 0.056 3.944 19 N -0.315 5.315 20 C 0.369 3.631 21 O -0.467 6.467 22 C -0.134 4.134 23 C 0.040 3.960 24 C -0.155 4.155 25 C -0.089 4.089 26 C -0.193 4.193 27 C -0.055 4.055 28 N -0.192 5.192 29 C -0.156 4.156 30 C -0.162 4.162 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.192 0.808 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.990 -8.181 -5.516 10.643 hybrid contribution 2.001 1.874 0.812 2.859 sum -1.989 -6.308 -4.703 8.116 Atomic orbital electron populations 1.70018 1.05576 1.24614 1.55503 1.25312 0.95428 0.98655 1.00061 0.86374 0.78533 0.83906 0.77840 1.21183 1.17363 1.23990 1.18819 0.88754 0.84706 1.45223 0.95117 1.44133 1.23444 1.07300 1.57206 1.20413 0.96655 0.88683 0.92527 1.22010 0.98815 0.98891 0.98733 1.21909 0.94442 0.91035 0.89827 0.89891 1.22639 0.93862 0.97834 1.00524 1.21964 0.99708 0.95136 0.98546 1.21659 0.87327 0.96264 0.94373 0.91749 1.21258 0.87310 0.90886 0.94899 1.48939 1.26326 1.44879 1.11377 1.18857 0.83371 0.80892 0.79943 1.90614 1.31122 1.57774 1.67239 1.19815 0.99951 0.89910 1.03723 1.19418 0.89364 0.92118 0.95069 1.21354 0.97378 0.96660 1.00087 1.21315 0.99740 0.92865 0.94946 1.22186 0.95398 1.00673 1.01090 1.22809 0.95337 0.92610 0.94729 1.67152 1.33693 1.00975 1.17386 1.23091 0.99859 1.03738 0.88955 1.23121 0.89075 1.03931 1.00103 0.94579 0.91724 0.95178 0.89587 0.96467 0.89214 0.88115 0.90237 0.88333 0.96532 0.92382 0.88698 0.85990 0.84236 0.80839 0.87139 0.87246 0.86945 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.86 10.93 21.65 0.24 -48.62 16 2 C 0.00 0.16 4.78 84.86 0.41 0.57 16 3 Si 0.90 41.81 26.45 68.60 1.81 43.63 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.25 -10.37 5.10 99.48 0.51 -9.86 16 6 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 7 C -0.24 -12.66 8.61 84.04 0.72 -11.94 16 8 H 0.03 1.71 7.83 -2.91 -0.02 1.69 16 9 N -0.60 -27.50 2.88 -702.99 -2.02 -29.52 16 10 C 0.14 5.55 5.35 86.21 0.46 6.01 16 11 C -0.14 -4.94 5.01 29.56 0.15 -4.79 16 12 C 0.13 4.05 3.85 44.61 0.17 4.22 16 13 H 0.08 2.61 7.97 -2.39 -0.02 2.59 16 14 C -0.11 -2.48 6.04 31.73 0.19 -2.28 16 15 C -0.12 -2.96 5.80 30.45 0.18 -2.78 16 16 C 0.11 3.63 2.10 43.54 0.09 3.72 16 17 H 0.06 2.05 5.55 -2.39 -0.01 2.04 16 18 C 0.18 7.88 4.43 85.27 0.38 8.26 16 19 N -0.58 -20.74 2.63 -771.29 -2.03 -22.77 16 20 C 0.58 22.70 5.60 87.66 0.49 23.19 16 21 O -0.59 -26.05 17.35 -3.05 -0.05 -26.10 16 22 C -0.13 -4.63 1.56 -53.68 -0.08 -4.71 16 23 C 0.18 7.01 4.12 42.55 0.18 7.19 16 24 C -0.13 -5.74 8.63 22.36 0.19 -5.55 16 25 C -0.06 -2.51 7.67 22.47 0.17 -2.34 16 26 C -0.17 -6.37 8.21 22.36 0.18 -6.19 16 27 C 0.10 3.63 11.18 84.67 0.95 4.57 16 28 N -0.48 -18.21 9.37 -183.89 -1.72 -19.93 16 29 C -0.12 -3.39 9.89 30.59 0.30 -3.09 16 30 C -0.13 -3.57 8.20 30.59 0.25 -3.32 16 31 H 0.24 13.04 8.31 -92.71 -0.77 12.27 16 32 H 0.06 2.20 3.92 -2.38 -0.01 2.19 16 33 H 0.03 1.22 7.96 -2.39 -0.02 1.20 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.92 7.38 -2.39 -0.02 1.90 16 38 H 0.08 2.20 6.13 -2.38 -0.01 2.18 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.02 0.83 7.50 -2.39 -0.02 0.81 16 41 H 0.06 2.75 4.60 -2.39 -0.01 2.74 16 42 H 0.09 4.47 7.06 -2.91 -0.02 4.45 16 43 H 0.12 4.71 7.87 -2.91 -0.02 4.69 16 44 H 0.14 4.58 6.82 -2.91 -0.02 4.56 16 45 H 0.17 5.00 8.06 -2.91 -0.02 4.97 16 46 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 47 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 48 H 0.11 2.79 7.32 -2.39 -0.02 2.77 16 49 H 0.11 3.35 7.61 -2.39 -0.02 3.33 16 Total: -1.00 -65.06 360.70 2.37 -62.70 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.77 Total: 29.88 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.38 Total: 10.74 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -5.54 Total: -120.85 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.81 Total: 43.63 kcal Total: -65.06 2.37 -62.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039375259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.707 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds