Wall clock time and date at job start Wed Apr 1 2020 00:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48501 * 109.47042 * 239.99995 * 3 2 1 5 5 H 1.48497 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46974 * 120.00308 * 3 2 1 7 7 C 1.38817 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99810 * 193.29124 * 7 2 1 9 9 N 1.36939 * 120.00138 * 13.29241 * 7 2 1 10 10 C 1.44787 * 120.18047 * 205.90325 * 9 7 2 11 11 C 1.51512 * 112.22167 * 264.57926 * 10 9 7 12 12 C 1.51313 * 113.25106 * 285.36515 * 11 10 9 13 13 H 1.08999 * 111.31748 * 185.23835 * 12 11 10 14 14 C 1.54724 * 106.48291 * 307.66630 * 12 11 10 15 15 C 1.54621 * 104.28846 * 88.98930 * 14 12 11 16 16 C 1.50866 * 105.21696 * 11.54147 * 15 14 12 17 17 H 1.08996 * 105.90281 * 122.35728 * 16 15 14 18 18 C 1.49819 * 120.17852 * 25.92401 * 9 7 2 19 19 N 1.48069 * 109.90674 * 8.03273 * 16 15 14 20 20 C 1.34780 * 127.83943 * 155.15577 * 19 16 15 21 21 O 1.21277 * 119.99651 * 4.19681 * 20 19 16 22 22 C 1.50703 * 119.99769 * 184.18666 * 20 19 16 23 23 H 1.09003 * 110.72935 * 310.24043 * 22 20 19 24 24 C 1.54366 * 110.99189 * 186.71100 * 22 20 19 25 25 C 1.51225 * 105.18092 * 267.76738 * 24 22 20 26 26 C 1.38751 * 130.68417 * 162.41461 * 25 24 22 27 27 C 1.38573 * 118.55821 * 180.37114 * 26 25 24 28 28 C 1.38232 * 118.98718 * 0.28048 * 27 26 25 29 29 N 1.31693 * 120.80088 * 359.97438 * 28 27 26 30 30 C 1.32294 * 122.03458 * 359.97438 * 29 28 27 31 31 C 1.51473 * 130.14729 * 180.02562 * 30 29 28 32 32 H 0.96997 * 119.99836 * 359.97438 * 1 2 3 33 33 H 1.09006 * 108.92899 * 143.87191 * 10 9 7 34 34 H 1.09002 * 108.85915 * 25.23611 * 10 9 7 35 35 H 1.09000 * 108.72622 * 164.39578 * 11 10 9 36 36 H 1.08999 * 108.72895 * 46.33819 * 11 10 9 37 37 H 1.08997 * 110.45203 * 207.83862 * 14 12 11 38 38 H 1.08997 * 110.45271 * 330.39051 * 14 12 11 39 39 H 1.08996 * 110.16846 * 252.68112 * 15 14 12 40 40 H 1.08997 * 110.45216 * 130.54657 * 15 14 12 41 41 H 1.08995 * 109.54699 * 270.53844 * 18 9 7 42 42 H 1.09005 * 109.54412 * 30.81023 * 18 9 7 43 43 H 1.09000 * 110.31116 * 26.89495 * 24 22 20 44 44 H 1.08993 * 110.31095 * 148.97418 * 24 22 20 45 45 H 1.08003 * 120.71905 * 0.63935 * 26 25 24 46 46 H 1.07997 * 120.50890 * 180.25828 * 27 26 25 47 47 H 1.07991 * 119.59630 * 179.97438 * 28 27 26 48 48 H 1.08992 * 110.29505 * 316.12139 * 31 30 29 49 49 H 1.09004 * 110.29078 * 78.24948 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0685 -1.2146 0.2156 9 7 1.3531 -2.3724 -0.2716 10 6 1.8569 -3.6274 0.2456 11 6 2.7271 -4.3535 -0.7599 12 6 1.9373 -4.9984 -1.8779 13 1 2.5823 -5.5873 -2.5301 14 6 0.8471 -5.8639 -1.2025 15 6 -0.3494 -4.9007 -1.0252 16 6 -0.0007 -3.6815 -1.8426 17 1 -0.8116 -3.5617 -2.5610 18 6 0.1092 -2.3609 -1.1065 19 7 1.2212 -3.9403 -2.6379 20 6 1.6008 -3.3472 -3.7871 21 8 0.9436 -2.4367 -4.2454 22 6 2.8418 -3.8153 -4.5025 23 1 3.6842 -3.8770 -3.8134 24 6 3.1743 -2.8925 -5.6944 25 6 2.4872 -3.5214 -6.8858 26 6 2.1629 -2.9917 -8.1265 27 6 1.5164 -3.8034 -9.0449 28 6 1.2133 -5.1051 -8.6919 29 7 1.5319 -5.5729 -7.5028 30 6 2.1501 -4.8303 -6.5991 31 6 2.5988 -5.1741 -5.1938 32 1 -0.4850 0.8400 0.0004 33 1 1.0132 -4.2654 0.5091 34 1 2.4433 -3.4288 1.1427 35 1 3.2924 -5.1267 -0.2396 36 1 3.4297 -3.6416 -1.1933 37 1 0.5735 -6.7012 -1.8445 38 1 1.1923 -6.2231 -0.2330 39 1 -0.4629 -4.6317 0.0249 40 1 -1.2651 -5.3577 -1.4000 41 1 -0.7605 -2.2269 -0.4633 42 1 0.1610 -1.5445 -1.8269 43 1 2.7864 -1.8896 -5.5163 44 1 4.2515 -2.8576 -5.8568 45 1 2.4128 -1.9702 -8.3727 46 1 1.2529 -3.4247 -10.0214 47 1 0.7092 -5.7461 -9.3998 48 1 1.8180 -5.7278 -4.6725 49 1 3.5205 -5.7554 -5.2228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039464591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:14 Heat of formation + Delta-G solvation = 43.539740 kcal Electronic energy + Delta-G solvation = -31551.163657 eV Core-core repulsion = 27671.972432 eV Total energy + Delta-G solvation = -3879.191225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04818 -40.09641 -38.06336 -35.68564 -34.56756 -32.70521 -32.37306 -31.62115 -30.90282 -29.41302 -27.87306 -27.04441 -25.63947 -24.40776 -23.74768 -22.28315 -21.90902 -21.23236 -20.33112 -19.29615 -18.24092 -17.27028 -16.62403 -16.50075 -16.11416 -15.79384 -15.18928 -15.08295 -14.80951 -14.25865 -14.06244 -13.69885 -13.49042 -13.25312 -13.09399 -13.00363 -12.90117 -12.77275 -12.39680 -12.25125 -12.01319 -11.86560 -11.75130 -11.53224 -11.38935 -11.26505 -11.10091 -10.80066 -10.78020 -10.67868 -10.44710 -10.15631 -10.09151 -9.75798 -9.68233 -9.39259 -9.29734 -9.24235 -8.72302 -8.45637 -8.01316 -6.62793 -5.69468 -3.12447 1.05514 1.25657 3.07505 3.36039 3.42381 3.48568 3.49220 3.70804 3.89589 4.40205 4.55638 4.60153 4.66104 4.83409 4.84908 4.87699 5.04489 5.11642 5.14909 5.21714 5.38570 5.43865 5.46118 5.48479 5.57962 5.60604 5.62650 5.71947 5.76110 5.78794 5.88426 5.97614 6.01720 6.06052 6.09481 6.14203 6.24790 6.26177 6.35060 6.52436 6.55963 6.58558 6.65303 6.77429 6.80126 7.03611 7.52201 7.65619 7.86011 7.93918 8.16033 8.48726 8.71084 9.25728 9.93661 10.46725 11.39087 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.004103 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.220309 B = 6823.070736 C = 8075.533310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.589 5.589 10 C 0.147 3.853 11 C -0.159 4.159 12 C 0.132 3.868 13 H 0.082 0.918 14 C -0.125 4.125 15 C -0.119 4.119 16 C 0.117 3.883 17 H 0.050 0.950 18 C 0.181 3.819 19 N -0.592 5.592 20 C 0.546 3.454 21 O -0.535 6.535 22 C -0.104 4.104 23 H 0.112 0.888 24 C -0.067 4.067 25 C -0.129 4.129 26 C -0.064 4.064 27 C -0.175 4.175 28 C 0.095 3.905 29 N -0.480 5.480 30 C 0.117 3.883 31 C -0.057 4.057 32 H 0.253 0.747 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.155 0.845 48 H 0.089 0.911 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -13.731 -11.271 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.080 0.920 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.200 4.200 12 C 0.028 3.972 13 H 0.100 0.900 14 C -0.164 4.164 15 C -0.157 4.157 16 C 0.013 3.987 17 H 0.069 0.931 18 C 0.057 3.943 19 N -0.326 5.326 20 C 0.333 3.667 21 O -0.412 6.412 22 C -0.126 4.126 23 H 0.130 0.870 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.089 4.089 27 C -0.194 4.194 28 C -0.062 4.062 29 N -0.189 5.189 30 C -0.021 4.021 31 C -0.095 4.095 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.150 0.850 46 H 0.153 0.847 47 H 0.172 0.828 48 H 0.107 0.893 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.372 -13.878 -11.415 18.494 hybrid contribution 0.690 1.893 -0.375 2.049 sum 5.063 -11.985 -11.791 17.558 Atomic orbital electron populations 1.69958 1.05161 1.25395 1.54510 1.24975 0.95273 0.98055 1.00833 0.86414 0.78904 0.83792 0.77883 1.21227 1.21668 1.21037 1.19034 0.91395 0.84664 1.43137 0.92042 1.44112 1.28312 1.01498 1.57274 1.20236 0.95783 0.88538 0.93542 1.22207 0.99922 0.99758 0.98116 1.21823 0.94107 0.88565 0.92690 0.90044 1.22657 0.95472 0.97327 1.00924 1.21952 0.97510 0.94648 1.01591 1.21483 0.86247 0.97021 0.93944 0.93120 1.21285 0.89443 0.90969 0.92632 1.48848 1.23545 1.38603 1.21555 1.19526 0.85946 0.81877 0.79325 1.90694 1.55435 1.28724 1.66348 1.21960 0.97837 0.95477 0.97301 0.86982 1.20887 0.99798 1.00514 0.89245 1.21428 0.99488 0.96415 0.95734 1.21071 0.95751 1.00000 0.92116 1.22035 1.01072 0.95639 1.00703 1.22560 0.97187 0.93812 0.92657 1.66807 1.11279 1.38806 1.01982 1.21754 0.94084 0.90794 0.95453 1.20921 1.02524 0.96481 0.89572 0.93708 0.94002 0.93689 0.92399 0.92211 0.91764 0.90002 0.89432 0.91512 0.93300 0.91584 0.88334 0.89246 0.84988 0.84721 0.82783 0.89286 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.81 10.98 55.49 0.61 -26.20 16 2 C 0.01 0.21 5.09 -17.43 -0.09 0.12 16 3 Si 0.90 22.47 29.57 -169.99 -5.03 17.44 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.95 9.59 -15.06 -0.14 -7.10 16 8 H 0.06 1.67 7.86 -52.49 -0.41 1.25 16 9 N -0.59 -14.35 2.90 -173.55 -0.50 -14.85 16 10 C 0.15 2.84 5.35 -5.71 -0.03 2.81 16 11 C -0.16 -2.48 5.01 -28.33 -0.14 -2.62 16 12 C 0.13 1.85 3.63 -66.68 -0.24 1.61 16 13 H 0.08 0.93 6.70 -51.93 -0.35 0.58 16 14 C -0.13 -1.54 6.04 -24.97 -0.15 -1.70 16 15 C -0.12 -1.78 5.80 -26.95 -0.16 -1.94 16 16 C 0.12 2.25 2.30 -68.85 -0.16 2.09 16 17 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 18 C 0.18 4.40 4.52 -2.90 -0.01 4.39 16 19 N -0.59 -10.54 2.63 -157.71 -0.41 -10.96 16 20 C 0.55 10.27 7.09 -10.98 -0.08 10.19 16 21 O -0.54 -12.43 15.95 5.56 0.09 -12.34 16 22 C -0.10 -1.45 2.61 -90.33 -0.24 -1.69 16 23 H 0.11 1.35 8.09 -51.93 -0.42 0.93 16 24 C -0.07 -0.90 6.03 -26.91 -0.16 -1.07 16 25 C -0.13 -1.79 6.16 -104.20 -0.64 -2.43 16 26 C -0.06 -0.78 10.17 -39.27 -0.40 -1.18 16 27 C -0.17 -1.88 10.12 -39.46 -0.40 -2.28 16 28 C 0.10 1.12 11.18 -17.61 -0.20 0.92 16 29 N -0.48 -6.90 10.35 -9.19 -0.10 -6.99 16 30 C 0.12 1.66 7.32 -82.04 -0.60 1.06 16 31 C -0.06 -0.70 5.67 -26.78 -0.15 -0.85 16 32 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.04 0.75 3.92 -51.93 -0.20 0.54 16 34 H 0.04 0.90 7.96 -51.93 -0.41 0.48 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.89 7.38 -51.93 -0.38 0.51 16 39 H 0.09 1.37 6.13 -51.93 -0.32 1.05 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 1.28 7.59 -51.93 -0.39 0.89 16 42 H 0.07 1.91 7.24 -51.93 -0.38 1.53 16 43 H 0.10 1.57 7.15 -51.93 -0.37 1.20 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.09 1.13 7.57 -51.93 -0.39 0.74 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -34.57 374.36 -11.09 -45.65 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.39 Total: 2.25 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.99 Total: 0.35 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.40 Total: -59.00 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.57 -11.09 -45.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039464591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.194 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds