Wall clock time and date at job start Wed Apr 1 2020 00:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99454 * 2 1 4 4 H 1.48497 * 109.47225 * 269.99880 * 3 2 1 5 5 H 1.48498 * 109.47389 * 29.99768 * 3 2 1 6 6 H 1.48507 * 109.47266 * 149.99840 * 3 2 1 7 7 C 1.38804 * 120.00786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00363 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.47539 * 125.67222 * 0.02562 * 9 7 2 11 11 C 1.55144 * 105.06735 * 203.97229 * 10 9 7 12 12 C 1.53881 * 101.45130 * 324.20420 * 11 10 9 13 13 C 1.53039 * 111.37035 * 154.99462 * 12 11 10 14 14 C 1.54717 * 104.47317 * 121.01490 * 13 12 11 15 15 N 1.48254 * 104.66673 * 23.66286 * 14 13 12 16 16 C 1.34784 * 127.73378 * 141.19443 * 15 14 13 17 17 O 1.21285 * 120.00086 * 175.20163 * 16 15 14 18 18 C 1.50700 * 119.99998 * 355.19347 * 16 15 14 19 19 C 1.50699 * 115.55272 * 279.86524 * 18 16 15 20 20 C 1.38679 * 120.41720 * 330.08860 * 19 18 16 21 21 C 1.38624 * 118.42288 * 180.02562 * 20 19 18 22 22 C 1.38232 * 119.15740 * 0.02562 * 21 20 19 23 23 N 1.31855 * 120.76543 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72181 * 359.70929 * 23 22 21 25 25 C 1.52993 * 117.49765 * 134.14926 * 18 16 15 26 26 C 1.52998 * 60.00306 * 252.51523 * 25 18 16 27 27 C 1.48452 * 104.53396 * 321.19292 * 15 14 13 28 28 C 1.47601 * 125.80854 * 180.02562 * 9 7 2 29 29 H 0.97000 * 120.00846 * 0.02562 * 1 2 3 30 30 H 1.08991 * 110.34315 * 85.04321 * 10 9 7 31 31 H 1.09007 * 110.33468 * 322.89597 * 10 9 7 32 32 H 1.09007 * 111.02403 * 82.24654 * 11 10 9 33 33 H 1.08996 * 111.02258 * 206.12072 * 11 10 9 34 34 H 1.08996 * 110.43317 * 239.75734 * 13 12 11 35 35 H 1.08994 * 110.43336 * 2.14250 * 13 12 11 36 36 H 1.09002 * 110.39928 * 142.46662 * 14 13 12 37 37 H 1.09008 * 110.39247 * 264.75571 * 14 13 12 38 38 H 1.07998 * 120.78627 * 359.97438 * 20 19 18 39 39 H 1.07999 * 120.42249 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.61365 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.60761 * 180.30848 * 24 23 22 42 42 H 1.08999 * 117.50160 * 0.02562 * 25 18 16 43 43 H 1.09000 * 117.49938 * 145.02387 * 25 18 16 44 44 H 1.09003 * 117.49703 * 252.51585 * 26 25 18 45 45 H 1.08997 * 117.49705 * 107.49423 * 26 25 18 46 46 H 1.09000 * 110.45990 * 279.69987 * 27 15 14 47 47 H 1.08997 * 110.46538 * 157.11066 * 27 15 14 48 48 H 1.08997 * 109.94271 * 58.62670 * 28 9 7 49 49 H 1.08996 * 109.96681 * 297.37560 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1424 -2.5340 -0.0005 11 6 -0.4088 -3.9358 0.6086 12 6 0.7790 -4.7410 0.0529 13 6 1.1080 -5.9385 0.9472 14 6 0.9548 -7.1674 0.0198 15 7 1.1471 -6.6311 -1.3489 16 6 1.7970 -7.2102 -2.3779 17 8 1.7958 -6.6825 -3.4700 18 6 2.5252 -8.5134 -2.1717 19 6 3.8868 -8.4034 -1.5352 20 6 4.6617 -7.2694 -1.7264 21 6 5.9079 -7.2122 -1.1220 22 6 6.3340 -8.2802 -0.3548 23 7 5.5701 -9.3430 -0.1948 24 6 4.3768 -9.4291 -0.7497 25 6 2.3206 -9.6103 -3.2184 26 6 1.6848 -9.7463 -1.8334 27 6 0.4636 -5.3134 -1.3321 28 6 1.9307 -3.7343 0.0016 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5274 -2.4841 -1.0190 31 1 -0.6005 -1.7600 0.6154 32 1 -0.3820 -3.9004 1.6977 33 1 -1.3567 -4.3417 0.2556 34 1 2.1305 -5.8669 1.3181 35 1 0.4057 -5.9969 1.7786 36 1 1.7177 -7.9122 0.2468 37 1 -0.0403 -7.6001 0.1239 38 1 4.3030 -6.4505 -2.3324 39 1 6.5380 -6.3443 -1.2490 40 1 7.3038 -8.2437 0.1191 41 1 3.7775 -10.3137 -0.5919 42 1 1.6596 -9.3893 -4.0564 43 1 3.1710 -10.2527 -3.4470 44 1 2.1169 -10.4782 -1.1509 45 1 0.6052 -9.6150 -1.7602 46 1 -0.6118 -5.4405 -1.4561 47 1 0.8644 -4.6663 -2.1122 48 1 2.5690 -3.8544 0.8770 49 1 2.5137 -3.8812 -0.9076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041585705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:09 Heat of formation + Delta-G solvation = 69.542418 kcal Electronic energy + Delta-G solvation = -30653.393320 eV Core-core repulsion = 26775.329656 eV Total energy + Delta-G solvation = -3878.063664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.08589 -39.95748 -38.70005 -36.75220 -35.68610 -32.69899 -32.61693 -31.08428 -30.55457 -29.22799 -28.19706 -26.42291 -25.03545 -24.14023 -23.87271 -22.67781 -22.30395 -21.90662 -20.33500 -19.09758 -18.67770 -17.69716 -17.08825 -16.72859 -16.32730 -15.95895 -15.56659 -15.14850 -14.83081 -14.75346 -14.37840 -14.14101 -14.00684 -13.67987 -13.47618 -13.20485 -13.08513 -12.76578 -12.44694 -12.24261 -11.97368 -11.87127 -11.72048 -11.62008 -11.43197 -11.33760 -11.26856 -10.98513 -10.90611 -10.80911 -10.22257 -10.11042 -10.01515 -9.95577 -9.90347 -9.75828 -9.55809 -9.46336 -9.07653 -8.68240 -8.62900 -6.83357 -5.65262 -3.06609 0.81733 1.06932 2.49652 2.82308 3.27538 3.40095 3.45041 3.46700 3.70857 4.01971 4.22984 4.29354 4.47778 4.48366 4.54907 4.71263 4.73328 4.79056 4.85879 4.97465 5.03341 5.17914 5.22244 5.26063 5.37420 5.40688 5.49473 5.52387 5.52643 5.54959 5.73129 5.76384 5.81427 5.88218 5.94793 6.00269 6.04518 6.08314 6.15329 6.32684 6.35684 6.44136 6.53204 6.58843 6.75082 6.83095 7.49956 7.56914 7.61721 7.71521 7.84648 8.12482 8.35358 9.21895 9.82405 10.47881 11.38674 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.003272 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.540526 B = 8556.692561 C = 9485.209683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.131 4.131 12 C -0.083 4.083 13 C -0.119 4.119 14 C 0.103 3.897 15 N -0.613 5.613 16 C 0.571 3.429 17 O -0.533 6.533 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.060 4.060 21 C -0.162 4.162 22 C 0.094 3.906 23 N -0.481 5.481 24 C 0.099 3.901 25 C -0.133 4.133 26 C -0.159 4.159 27 C 0.125 3.875 28 C 0.153 3.847 29 H 0.252 0.748 30 H 0.012 0.988 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.024 0.976 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 -21.991 0.183 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.170 4.170 12 C -0.084 4.084 13 C -0.158 4.158 14 C -0.020 4.020 15 N -0.346 5.346 16 C 0.358 3.642 17 O -0.410 6.410 18 C -0.116 4.116 19 C -0.092 4.092 20 C -0.086 4.086 21 C -0.182 4.182 22 C -0.063 4.063 23 N -0.189 5.189 24 C -0.058 4.058 25 C -0.170 4.170 26 C -0.196 4.196 27 C 0.004 3.996 28 C 0.027 3.973 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.172 0.828 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.042 0.958 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.298 -22.204 0.017 22.616 hybrid contribution 0.201 1.704 -0.550 1.802 sum 4.499 -20.500 -0.533 20.994 Atomic orbital electron populations 1.69787 1.04861 1.24737 1.57720 1.24758 0.95713 0.97636 1.02473 0.86091 0.78532 0.83406 0.77588 1.21638 1.21639 1.20729 1.19061 0.90462 0.82468 1.42964 0.90631 1.44667 1.01875 0.99589 1.86891 1.21988 0.84682 0.92474 0.98205 1.22982 0.95021 0.98825 1.00174 1.21583 0.98510 0.94650 0.93687 1.22479 1.02657 0.93156 0.97498 1.22493 1.01253 0.96983 0.81292 1.49051 1.53448 1.20570 1.11527 1.18823 0.77938 0.84389 0.83003 1.90739 1.61666 1.64394 1.24175 1.19926 0.94222 0.90405 1.07022 1.19683 0.94051 0.96194 0.99257 1.21541 0.93440 0.97145 0.96449 1.22194 0.96931 1.00532 0.98540 1.22797 0.99162 0.88896 0.95420 1.67729 1.05041 1.25586 1.20551 1.22577 0.92332 0.97792 0.93049 1.23102 1.03242 0.97698 0.92976 1.23242 0.99612 0.97335 0.99428 1.22335 0.96475 0.82774 0.98040 1.21239 0.92801 0.85528 0.97730 0.93755 0.97038 0.87632 0.91648 0.92083 0.90937 0.90060 0.90593 0.91011 0.84737 0.84375 0.82588 0.82758 0.87426 0.87583 0.87315 0.87615 0.91039 0.89512 0.95785 0.96264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 2 C -0.01 -0.29 5.49 -17.44 -0.10 -0.39 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.20 10.29 -15.06 -0.15 -6.35 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.40 3.42 -170.15 -0.58 -15.98 16 10 C 0.15 3.59 5.81 -2.34 -0.01 3.58 16 11 C -0.13 -2.32 5.90 -25.14 -0.15 -2.47 16 12 C -0.08 -1.36 0.79 -153.93 -0.12 -1.49 16 13 C -0.12 -1.52 6.31 -25.81 -0.16 -1.68 16 14 C 0.10 1.12 6.60 -2.17 -0.01 1.10 16 15 N -0.61 -8.53 3.33 -169.52 -0.56 -9.09 16 16 C 0.57 8.36 5.97 -10.98 -0.07 8.30 16 17 O -0.53 -9.94 17.31 5.55 0.10 -9.84 16 18 C -0.11 -1.22 1.42 -156.82 -0.22 -1.44 16 19 C -0.09 -0.99 5.35 -104.48 -0.56 -1.55 16 20 C -0.06 -0.73 9.44 -39.28 -0.37 -1.10 16 21 C -0.16 -1.70 10.11 -39.44 -0.40 -2.10 16 22 C 0.09 0.94 11.18 -17.54 -0.20 0.75 16 23 N -0.48 -5.37 10.36 -13.25 -0.14 -5.51 16 24 C 0.10 1.00 10.53 -17.55 -0.18 0.81 16 25 C -0.13 -1.18 9.84 -26.74 -0.26 -1.44 16 26 C -0.16 -1.19 8.82 -26.73 -0.24 -1.43 16 27 C 0.13 2.03 6.02 -2.89 -0.02 2.01 16 28 C 0.15 3.19 6.37 -3.41 -0.02 3.16 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 2.83 5.88 -51.92 -0.31 2.53 16 32 H 0.06 1.13 7.90 -51.92 -0.41 0.72 16 33 H 0.06 0.94 7.65 -51.93 -0.40 0.55 16 34 H 0.07 0.96 7.41 -51.93 -0.38 0.57 16 35 H 0.08 0.91 7.62 -51.93 -0.40 0.52 16 36 H 0.08 0.74 6.98 -51.93 -0.36 0.37 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.13 1.87 7.44 -52.49 -0.39 1.48 16 39 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.16 1.15 5.97 -52.49 -0.31 0.83 16 42 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.11 0.59 6.13 -51.93 -0.32 0.27 16 45 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.07 7.59 -51.93 -0.39 0.68 16 47 H 0.09 1.69 7.45 -51.93 -0.39 1.30 16 48 H 0.02 0.50 7.48 -51.93 -0.39 0.11 16 49 H 0.02 0.43 7.63 -51.93 -0.40 0.03 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -33.29 387.71 -10.40 -43.69 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.35 Total: 1.71 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.25 Total: -1.74 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.72 Total: -56.83 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.10 Total: -9.84 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.29 -10.40 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041585705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.231 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds