Wall clock time and date at job start Wed Apr 1 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99454 * 2 1 4 4 H 1.48497 * 109.47225 * 269.99880 * 3 2 1 5 5 H 1.48498 * 109.47389 * 29.99768 * 3 2 1 6 6 H 1.48507 * 109.47266 * 149.99840 * 3 2 1 7 7 C 1.38804 * 120.00786 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00363 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.47539 * 125.67222 * 0.02562 * 9 7 2 11 11 C 1.55144 * 105.06735 * 203.97229 * 10 9 7 12 12 C 1.53881 * 101.45130 * 324.20420 * 11 10 9 13 13 C 1.53039 * 111.37035 * 154.99462 * 12 11 10 14 14 C 1.54717 * 104.47317 * 121.01490 * 13 12 11 15 15 N 1.48254 * 104.66673 * 23.66286 * 14 13 12 16 16 C 1.34784 * 127.73378 * 141.19443 * 15 14 13 17 17 O 1.21285 * 120.00086 * 175.20163 * 16 15 14 18 18 C 1.50700 * 119.99998 * 355.19347 * 16 15 14 19 19 C 1.50699 * 115.55272 * 279.86524 * 18 16 15 20 20 C 1.38679 * 120.41720 * 330.08860 * 19 18 16 21 21 C 1.38624 * 118.42288 * 180.02562 * 20 19 18 22 22 C 1.38232 * 119.15740 * 0.02562 * 21 20 19 23 23 N 1.31855 * 120.76543 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72181 * 359.70929 * 23 22 21 25 25 C 1.52993 * 117.49765 * 134.14926 * 18 16 15 26 26 C 1.52998 * 60.00306 * 252.51523 * 25 18 16 27 27 C 1.48452 * 104.53396 * 321.19292 * 15 14 13 28 28 C 1.47601 * 125.80854 * 180.02562 * 9 7 2 29 29 H 0.97000 * 120.00846 * 0.02562 * 1 2 3 30 30 H 1.08991 * 110.34315 * 85.04321 * 10 9 7 31 31 H 1.09007 * 110.33468 * 322.89597 * 10 9 7 32 32 H 1.09007 * 111.02403 * 82.24654 * 11 10 9 33 33 H 1.08996 * 111.02258 * 206.12072 * 11 10 9 34 34 H 1.08996 * 110.43317 * 239.75734 * 13 12 11 35 35 H 1.08994 * 110.43336 * 2.14250 * 13 12 11 36 36 H 1.09002 * 110.39928 * 142.46662 * 14 13 12 37 37 H 1.09008 * 110.39247 * 264.75571 * 14 13 12 38 38 H 1.07998 * 120.78627 * 359.97438 * 20 19 18 39 39 H 1.07999 * 120.42249 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.61365 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.60761 * 180.30848 * 24 23 22 42 42 H 1.08999 * 117.50160 * 0.02562 * 25 18 16 43 43 H 1.09000 * 117.49938 * 145.02387 * 25 18 16 44 44 H 1.09003 * 117.49703 * 252.51585 * 26 25 18 45 45 H 1.08997 * 117.49705 * 107.49423 * 26 25 18 46 46 H 1.09000 * 110.45990 * 279.69987 * 27 15 14 47 47 H 1.08997 * 110.46538 * 157.11066 * 27 15 14 48 48 H 1.08997 * 109.94271 * 58.62670 * 28 9 7 49 49 H 1.08996 * 109.96681 * 297.37560 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1424 -2.5340 -0.0005 11 6 -0.4088 -3.9358 0.6086 12 6 0.7790 -4.7410 0.0529 13 6 1.1080 -5.9385 0.9472 14 6 0.9548 -7.1674 0.0198 15 7 1.1471 -6.6311 -1.3489 16 6 1.7970 -7.2102 -2.3779 17 8 1.7958 -6.6825 -3.4700 18 6 2.5252 -8.5134 -2.1717 19 6 3.8868 -8.4034 -1.5352 20 6 4.6617 -7.2694 -1.7264 21 6 5.9079 -7.2122 -1.1220 22 6 6.3340 -8.2802 -0.3548 23 7 5.5701 -9.3430 -0.1948 24 6 4.3768 -9.4291 -0.7497 25 6 2.3206 -9.6103 -3.2184 26 6 1.6848 -9.7463 -1.8334 27 6 0.4636 -5.3134 -1.3321 28 6 1.9307 -3.7343 0.0016 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5274 -2.4841 -1.0190 31 1 -0.6005 -1.7600 0.6154 32 1 -0.3820 -3.9004 1.6977 33 1 -1.3567 -4.3417 0.2556 34 1 2.1305 -5.8669 1.3181 35 1 0.4057 -5.9969 1.7786 36 1 1.7177 -7.9122 0.2468 37 1 -0.0403 -7.6001 0.1239 38 1 4.3030 -6.4505 -2.3324 39 1 6.5380 -6.3443 -1.2490 40 1 7.3038 -8.2437 0.1191 41 1 3.7775 -10.3137 -0.5919 42 1 1.6596 -9.3893 -4.0564 43 1 3.1710 -10.2527 -3.4470 44 1 2.1169 -10.4782 -1.1509 45 1 0.6052 -9.6150 -1.7602 46 1 -0.6118 -5.4405 -1.4561 47 1 0.8644 -4.6663 -2.1122 48 1 2.5690 -3.8544 0.8770 49 1 2.5137 -3.8812 -0.9076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041585705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:07 Heat of formation + Delta-G solvation = 49.251405 kcal Electronic energy + Delta-G solvation = -30654.273204 eV Core-core repulsion = 26775.329656 eV Total energy + Delta-G solvation = -3878.943549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.02628 -41.04562 -39.90669 -37.69155 -37.22384 -34.50254 -33.45498 -32.15037 -31.84284 -30.75266 -29.65547 -27.87233 -26.55305 -25.29446 -24.69645 -23.65813 -23.29765 -22.79571 -22.23654 -20.29057 -19.89730 -18.87252 -18.51679 -17.92458 -17.25312 -16.95426 -16.85304 -16.60277 -16.03989 -16.00182 -15.56522 -15.50253 -15.08022 -14.89353 -14.71824 -14.29919 -14.16297 -14.01640 -13.88395 -13.52324 -13.30021 -13.11013 -13.00119 -12.89540 -12.80753 -12.68650 -12.53824 -12.40307 -12.09188 -12.04228 -11.86185 -11.78616 -11.55830 -11.45057 -11.17932 -11.03151 -10.77431 -10.74886 -10.40963 -9.83543 -9.81796 -8.92401 -7.80849 -5.25400 0.04440 0.21990 1.40815 1.42336 1.44489 1.53055 1.79192 2.45688 2.53523 2.93817 3.24028 3.28849 3.33046 3.54384 3.59034 3.61347 3.68601 3.74482 3.81823 3.86525 3.90338 4.00646 4.21618 4.25476 4.27941 4.35702 4.43126 4.57031 4.59845 4.65596 4.65893 4.70241 4.77222 4.83437 4.84485 4.89747 4.93192 5.04151 5.04786 5.09929 5.13269 5.14479 5.25363 5.31561 5.37280 5.41260 5.63441 5.67062 5.80341 6.28486 6.49346 6.93878 7.01046 7.07828 7.74024 8.38534 9.20511 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.003272 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.540526 B = 8556.692561 C = 9485.209683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.626 5.626 10 C 0.152 3.848 11 C -0.111 4.111 12 C -0.071 4.071 13 C -0.112 4.112 14 C 0.106 3.894 15 N -0.612 5.612 16 C 0.566 3.434 17 O -0.589 6.589 18 C -0.131 4.131 19 C -0.089 4.089 20 C -0.087 4.087 21 C -0.168 4.168 22 C 0.094 3.906 23 N -0.493 5.493 24 C 0.107 3.893 25 C -0.136 4.136 26 C -0.125 4.125 27 C 0.128 3.872 28 C 0.153 3.847 29 H 0.248 0.752 30 H -0.020 1.020 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.147 0.853 40 H 0.183 0.817 41 H 0.188 0.812 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.142 0.858 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.038 0.962 48 H 0.028 0.972 49 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 -25.596 2.438 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.027 3.973 11 C -0.150 4.150 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.015 4.015 15 N -0.344 5.344 16 C 0.356 3.644 17 O -0.470 6.470 18 C -0.135 4.135 19 C -0.091 4.091 20 C -0.113 4.113 21 C -0.187 4.187 22 C -0.063 4.063 23 N -0.202 5.202 24 C -0.050 4.050 25 C -0.173 4.173 26 C -0.162 4.162 27 C 0.006 3.994 28 C 0.028 3.972 29 H 0.058 0.942 30 H -0.002 1.002 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.165 0.835 40 H 0.200 0.800 41 H 0.205 0.795 42 H 0.112 0.888 43 H 0.140 0.860 44 H 0.160 0.840 45 H 0.133 0.867 46 H 0.107 0.893 47 H 0.057 0.943 48 H 0.046 0.954 49 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 4.357 -25.850 2.308 26.316 hybrid contribution 0.224 2.882 -1.331 3.183 sum 4.581 -22.967 0.977 23.440 Atomic orbital electron populations 1.70041 1.06073 1.25072 1.58337 1.25586 0.96669 1.00786 1.02503 0.85088 0.77767 0.79192 0.77344 1.21727 1.21376 1.19426 1.19401 0.90801 0.84053 1.42996 0.90883 1.44993 1.02938 1.00603 1.86698 1.21811 0.83649 0.95620 0.96245 1.22837 0.96886 0.94717 1.00549 1.21445 0.95897 0.95008 0.94926 1.22475 1.03226 0.91551 0.97789 1.22748 1.03940 0.96396 0.78429 1.49144 1.52802 1.19554 1.12929 1.19574 0.77277 0.85385 0.82212 1.90701 1.63503 1.66208 1.26562 1.19786 0.94558 0.89300 1.09871 1.19706 0.93904 0.96042 0.99466 1.21485 0.94904 0.97395 0.97494 1.22343 0.96450 1.01398 0.98542 1.23195 1.00041 0.88188 0.94842 1.67816 1.05585 1.25819 1.20936 1.22996 0.92158 0.98119 0.91726 1.23198 1.03914 0.96772 0.93441 1.23472 0.99798 0.94606 0.98302 1.22120 0.97322 0.83652 0.96353 1.21359 0.94418 0.84982 0.96458 0.94230 1.00232 0.90851 0.90308 0.88942 0.91369 0.87140 0.88480 0.87602 0.87996 0.83478 0.80015 0.79497 0.88798 0.85995 0.83997 0.86699 0.89331 0.94347 0.95423 0.98696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 10.09 21.65 0.22 -56.96 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -14.23 10.29 84.03 0.86 -13.36 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.63 -33.41 3.42 -692.22 -2.37 -35.78 16 10 C 0.15 7.50 5.81 86.92 0.51 8.00 16 11 C -0.11 -3.81 5.90 31.63 0.19 -3.62 16 12 C -0.07 -2.30 0.79 -51.80 -0.04 -2.34 16 13 C -0.11 -2.48 6.31 31.19 0.20 -2.28 16 14 C 0.11 1.88 6.60 86.63 0.57 2.46 16 15 N -0.61 -16.50 3.33 -808.62 -2.69 -19.19 16 16 C 0.57 16.74 5.97 87.66 0.52 17.26 16 17 O -0.59 -23.49 17.31 -3.05 -0.05 -23.54 16 18 C -0.13 -2.63 1.42 -53.68 -0.08 -2.71 16 19 C -0.09 -1.83 5.35 -19.78 -0.11 -1.93 16 20 C -0.09 -2.18 9.44 22.47 0.21 -1.97 16 21 C -0.17 -3.49 10.11 22.36 0.23 -3.26 16 22 C 0.09 1.69 11.18 84.69 0.95 2.64 16 23 N -0.49 -9.53 10.36 -195.84 -2.03 -11.56 16 24 C 0.11 1.77 10.53 84.67 0.89 2.66 16 25 C -0.14 -2.13 9.84 30.59 0.30 -1.83 16 26 C -0.13 -1.33 8.82 30.59 0.27 -1.06 16 27 C 0.13 4.20 6.02 86.05 0.52 4.72 16 28 C 0.15 6.62 6.37 86.19 0.55 7.17 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H -0.02 -1.11 8.14 -2.39 -0.02 -1.12 16 31 H 0.07 4.12 5.88 -2.38 -0.01 4.10 16 32 H 0.08 2.53 7.90 -2.38 -0.02 2.51 16 33 H 0.09 2.61 7.65 -2.39 -0.02 2.60 16 34 H 0.07 1.61 7.41 -2.39 -0.02 1.59 16 35 H 0.11 1.89 7.62 -2.39 -0.02 1.87 16 36 H 0.10 1.39 6.98 -2.39 -0.02 1.37 16 37 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 3.17 7.44 -2.91 -0.02 3.15 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.19 1.72 5.97 -2.91 -0.02 1.70 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.14 0.60 6.13 -2.39 -0.01 0.58 16 45 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 2.59 7.59 -2.39 -0.02 2.57 16 47 H 0.04 1.62 7.45 -2.39 -0.02 1.60 16 48 H 0.03 1.18 7.48 -2.39 -0.02 1.16 16 49 H 0.00 -0.23 7.63 -2.39 -0.02 -0.25 16 Total: -1.00 -79.83 387.71 3.07 -76.77 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.95 Total: 14.05 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 7.01 Total: 7.37 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -6.87 Total: -123.48 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -79.83 3.07 -76.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041585705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.017 kcal (2) G-P(sol) polarization free energy of solvation -79.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds