Wall clock time and date at job start Wed Apr 1 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00361 * 2 1 4 4 H 1.48504 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47201 * 300.00061 * 3 2 1 6 6 H 1.48505 * 109.46866 * 60.00234 * 3 2 1 7 7 C 1.38812 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.67429 * 0.03876 * 9 7 2 11 11 C 1.55185 * 105.00691 * 203.82499 * 10 9 7 12 12 C 1.53648 * 101.42169 * 324.51013 * 11 10 9 13 13 C 1.53660 * 111.42054 * 272.73118 * 12 11 10 14 14 C 1.55183 * 101.41626 * 204.96560 * 13 12 11 15 15 N 1.47558 * 105.00743 * 35.49747 * 14 13 12 16 16 C 1.34775 * 125.67257 * 156.39705 * 15 14 13 17 17 O 1.21285 * 120.00136 * 175.05751 * 16 15 14 18 18 C 1.50694 * 120.00132 * 355.06291 * 16 15 14 19 19 C 1.50698 * 115.55109 * 295.09250 * 18 16 15 20 20 C 1.38678 * 120.42080 * 297.89619 * 19 18 16 21 21 C 1.38627 * 118.42252 * 179.77714 * 20 19 18 22 22 C 1.38225 * 119.15884 * 0.51836 * 21 20 19 23 23 N 1.31861 * 120.76526 * 359.71978 * 22 21 20 24 24 C 1.31881 * 121.72136 * 0.02562 * 23 22 21 25 25 C 1.53000 * 117.49935 * 149.42558 * 18 16 15 26 26 C 1.52998 * 117.50338 * 80.76528 * 18 16 15 27 27 C 1.47398 * 108.65262 * 336.13542 * 15 14 13 28 28 C 1.47404 * 125.67451 * 180.02562 * 9 7 2 29 29 H 0.97007 * 119.99466 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.33316 * 322.71326 * 10 9 7 31 31 H 1.09003 * 110.33325 * 84.84393 * 10 9 7 32 32 H 1.09003 * 111.03647 * 206.46690 * 11 10 9 33 33 H 1.08999 * 111.03058 * 82.54389 * 11 10 9 34 34 H 1.08997 * 111.03415 * 323.00204 * 13 12 11 35 35 H 1.09001 * 111.03161 * 86.89018 * 13 12 11 36 36 H 1.08994 * 110.33599 * 276.60760 * 14 13 12 37 37 H 1.08999 * 110.32757 * 154.37818 * 14 13 12 38 38 H 1.07998 * 120.78404 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.42016 * 180.21318 * 21 20 19 40 40 H 1.08002 * 119.62036 * 179.75038 * 22 21 20 41 41 H 1.08007 * 119.61099 * 179.97438 * 24 23 22 42 42 H 1.08993 * 117.50309 * 359.97438 * 25 18 16 43 43 H 1.09006 * 117.49907 * 145.02188 * 25 18 16 44 44 H 1.08996 * 117.50203 * 214.97739 * 26 18 16 45 45 H 1.08999 * 117.49598 * 0.02562 * 26 18 16 46 46 H 1.08995 * 109.99089 * 121.45835 * 27 15 14 47 47 H 1.08999 * 109.98547 * 242.72908 * 27 15 14 48 48 H 1.08999 * 109.99050 * 58.57104 * 28 9 7 49 49 H 1.09001 * 109.98604 * 297.26529 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3880 -0.0016 10 6 -0.1430 -2.5339 -0.0031 11 6 -0.4079 -3.9383 0.6017 12 6 0.7831 -4.7368 0.0497 13 6 0.4715 -5.3237 -1.3358 14 6 1.4385 -6.5365 -1.3803 15 7 1.4769 -7.0455 0.0042 16 6 1.8004 -8.3014 0.3712 17 8 1.8861 -8.5866 1.5469 18 6 2.0556 -9.3512 -0.6793 19 6 0.8691 -9.7190 -1.5324 20 6 -0.2622 -10.2790 -0.9580 21 6 -1.3315 -10.5970 -1.7810 22 6 -1.2311 -10.3573 -3.1386 23 7 -0.1375 -9.8279 -3.6510 24 6 0.8968 -9.5083 -2.8978 25 6 3.0538 -10.4605 -0.3416 26 6 3.4343 -9.3667 -1.3424 27 6 1.1089 -5.9504 0.9195 28 6 1.9326 -3.7312 -0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6008 -1.7624 0.6159 31 1 -0.5280 -2.4796 -1.0214 32 1 -1.3528 -4.3468 0.2432 33 1 -0.3859 -3.9056 1.6910 34 1 -0.5670 -5.6487 -1.3984 35 1 0.7035 -4.6083 -2.1248 36 1 2.4322 -6.2173 -1.6943 37 1 1.0550 -7.3021 -2.0548 38 1 -0.3105 -10.4591 0.1057 39 1 -2.2296 -11.0313 -1.3673 40 1 -2.0581 -10.6061 -3.7871 41 1 1.7758 -9.0768 -3.3535 42 1 3.5262 -10.4308 0.6402 43 1 2.8524 -11.4562 -0.7368 44 1 3.4832 -9.6432 -2.3956 45 1 4.1569 -8.6177 -1.0186 46 1 0.2352 -6.2331 1.5066 47 1 1.9441 -5.7215 1.5814 48 1 2.5721 -3.8512 0.8727 49 1 2.5144 -3.8770 -0.9119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041585711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:14 Heat of formation + Delta-G solvation = 65.477581 kcal Electronic energy + Delta-G solvation = -30366.095368 eV Core-core repulsion = 26487.855439 eV Total energy + Delta-G solvation = -3878.239929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16111 -40.01066 -38.80143 -36.73668 -35.69510 -32.75005 -32.67440 -31.25604 -30.42150 -29.40839 -28.46092 -26.12877 -25.09669 -24.14219 -23.83162 -22.71763 -22.45519 -21.90988 -20.35259 -19.15373 -18.69843 -17.71717 -17.06131 -16.72737 -16.37462 -16.05865 -15.92384 -15.13971 -14.87597 -14.61569 -14.42474 -14.19189 -14.04190 -13.79026 -13.46600 -13.34964 -12.94726 -12.62470 -12.56428 -12.37989 -12.22802 -11.91165 -11.82908 -11.54743 -11.41451 -11.29026 -11.16696 -10.92128 -10.88089 -10.79253 -10.27381 -10.22766 -10.05495 -10.00506 -9.93954 -9.78548 -9.62319 -9.50736 -9.17712 -8.67216 -8.60525 -6.85225 -5.67171 -3.08565 0.72600 0.95336 2.43712 2.84275 3.28779 3.38632 3.44355 3.46689 3.54877 3.99523 4.24026 4.27750 4.45974 4.46863 4.54095 4.63390 4.70173 4.71894 4.82737 4.90117 5.00267 5.13137 5.25517 5.30840 5.34589 5.40126 5.44366 5.47876 5.53764 5.54995 5.76765 5.77478 5.80432 5.81445 5.90746 5.92199 6.02099 6.14510 6.21756 6.25457 6.33121 6.34075 6.52131 6.61443 6.71504 6.80989 7.48819 7.50275 7.61024 7.64045 7.83597 8.08690 8.33677 9.20142 9.80762 10.45783 11.36869 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002753 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.969526 B =10169.355732 C =10686.410019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.155 3.845 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.113 4.113 14 C 0.098 3.902 15 N -0.605 5.605 16 C 0.567 3.433 17 O -0.539 6.539 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.061 4.061 21 C -0.168 4.168 22 C 0.097 3.903 23 N -0.479 5.479 24 C 0.107 3.893 25 C -0.132 4.132 26 C -0.154 4.154 27 C 0.125 3.875 28 C 0.152 3.848 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.025 0.975 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -22.968 -5.027 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.082 4.082 13 C -0.151 4.151 14 C -0.024 4.024 15 N -0.338 5.338 16 C 0.354 3.646 17 O -0.416 6.416 18 C -0.121 4.121 19 C -0.096 4.096 20 C -0.087 4.087 21 C -0.188 4.188 22 C -0.060 4.060 23 N -0.187 5.187 24 C -0.050 4.050 25 C -0.169 4.169 26 C -0.191 4.191 27 C 0.003 3.997 28 C 0.026 3.974 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.025 -22.803 -5.281 23.407 hybrid contribution 0.295 0.744 0.850 1.167 sum 0.269 -22.059 -4.431 22.502 Atomic orbital electron populations 1.69809 1.04875 1.24643 1.57721 1.24777 0.95723 0.97688 1.02467 0.86010 0.78670 0.83650 0.77246 1.20544 1.21763 1.21755 1.19117 0.90516 0.82427 1.42917 0.90482 1.44627 1.01884 0.99588 1.86901 1.21958 0.84604 0.92153 0.98242 1.22871 0.94966 0.98881 1.00257 1.21544 0.98586 0.93650 0.94417 1.22617 0.98741 0.95940 0.97761 1.22555 1.00409 0.96605 0.82868 1.48570 1.66820 1.09399 1.08995 1.18861 0.76654 0.80968 0.88099 1.90706 1.52234 1.80291 1.18391 1.19915 0.90739 1.01129 1.00360 1.19754 0.94677 1.00690 0.94471 1.21492 0.92056 0.94302 1.00837 1.22163 0.99678 1.01853 0.95090 1.22830 0.95592 0.94278 0.93288 1.67765 1.00417 1.10699 1.39858 1.22676 0.96929 0.95718 0.89629 1.23065 0.98910 0.93781 1.01193 1.23174 0.94371 1.02210 0.99310 1.21934 1.00403 0.85077 0.92324 1.21120 0.92700 0.85536 0.98007 0.93796 0.87705 0.96891 0.92076 0.91846 0.90958 0.89138 0.90994 0.90840 0.84742 0.84527 0.82581 0.82587 0.87222 0.87799 0.87384 0.87566 0.91326 0.91027 0.95701 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.09 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -15.09 3.41 -170.41 -0.58 -15.67 16 10 C 0.16 3.65 5.83 -2.30 -0.01 3.64 16 11 C -0.13 -2.40 5.93 -25.24 -0.15 -2.55 16 12 C -0.08 -1.35 0.61 -154.02 -0.09 -1.44 16 13 C -0.11 -1.62 5.85 -25.23 -0.15 -1.76 16 14 C 0.10 1.21 6.67 -2.31 -0.02 1.20 16 15 N -0.61 -8.44 3.34 -170.87 -0.57 -9.01 16 16 C 0.57 7.95 6.98 -10.99 -0.08 7.87 16 17 O -0.54 -9.34 17.02 5.55 0.09 -9.24 16 18 C -0.12 -1.22 1.42 -156.82 -0.22 -1.44 16 19 C -0.09 -0.92 4.30 -104.48 -0.45 -1.37 16 20 C -0.06 -0.59 9.77 -39.28 -0.38 -0.97 16 21 C -0.17 -1.36 10.11 -39.44 -0.40 -1.76 16 22 C 0.10 0.84 11.18 -17.54 -0.20 0.64 16 23 N -0.48 -5.01 10.36 -13.25 -0.14 -5.15 16 24 C 0.11 1.03 8.69 -17.55 -0.15 0.88 16 25 C -0.13 -1.15 9.76 -26.69 -0.26 -1.41 16 26 C -0.15 -1.23 9.45 -26.70 -0.25 -1.48 16 27 C 0.12 1.94 6.14 -3.65 -0.02 1.91 16 28 C 0.15 3.08 6.40 -3.64 -0.02 3.05 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.11 2.81 5.89 -51.93 -0.31 2.51 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 33 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 35 H 0.09 1.39 7.94 -51.93 -0.41 0.97 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.81 4.97 -51.93 -0.26 0.56 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.16 1.22 6.82 -52.48 -0.36 0.87 16 42 H 0.11 1.05 7.98 -51.93 -0.41 0.64 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.11 0.66 6.96 -51.93 -0.36 0.30 16 45 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 47 H 0.07 1.18 7.42 -51.93 -0.39 0.80 16 48 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 49 H 0.02 0.46 7.78 -51.93 -0.40 0.06 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -32.39 387.57 -10.36 -42.75 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.43 Total: 1.21 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.11 Total: -1.65 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.73 Total: -55.79 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.39 -10.36 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041585711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.223 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds