Wall clock time and date at job start Wed Apr 1 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00361 * 2 1 4 4 H 1.48504 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47201 * 300.00061 * 3 2 1 6 6 H 1.48505 * 109.46866 * 60.00234 * 3 2 1 7 7 C 1.38812 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.67429 * 0.03876 * 9 7 2 11 11 C 1.55185 * 105.00691 * 203.82499 * 10 9 7 12 12 C 1.53648 * 101.42169 * 324.51013 * 11 10 9 13 13 C 1.53660 * 111.42054 * 272.73118 * 12 11 10 14 14 C 1.55183 * 101.41626 * 204.96560 * 13 12 11 15 15 N 1.47558 * 105.00743 * 35.49747 * 14 13 12 16 16 C 1.34775 * 125.67257 * 156.39705 * 15 14 13 17 17 O 1.21285 * 120.00136 * 175.05751 * 16 15 14 18 18 C 1.50694 * 120.00132 * 355.06291 * 16 15 14 19 19 C 1.50698 * 115.55109 * 295.09250 * 18 16 15 20 20 C 1.38678 * 120.42080 * 297.89619 * 19 18 16 21 21 C 1.38627 * 118.42252 * 179.77714 * 20 19 18 22 22 C 1.38225 * 119.15884 * 0.51836 * 21 20 19 23 23 N 1.31861 * 120.76526 * 359.71978 * 22 21 20 24 24 C 1.31881 * 121.72136 * 0.02562 * 23 22 21 25 25 C 1.53000 * 117.49935 * 149.42558 * 18 16 15 26 26 C 1.52998 * 117.50338 * 80.76528 * 18 16 15 27 27 C 1.47398 * 108.65262 * 336.13542 * 15 14 13 28 28 C 1.47404 * 125.67451 * 180.02562 * 9 7 2 29 29 H 0.97007 * 119.99466 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.33316 * 322.71326 * 10 9 7 31 31 H 1.09003 * 110.33325 * 84.84393 * 10 9 7 32 32 H 1.09003 * 111.03647 * 206.46690 * 11 10 9 33 33 H 1.08999 * 111.03058 * 82.54389 * 11 10 9 34 34 H 1.08997 * 111.03415 * 323.00204 * 13 12 11 35 35 H 1.09001 * 111.03161 * 86.89018 * 13 12 11 36 36 H 1.08994 * 110.33599 * 276.60760 * 14 13 12 37 37 H 1.08999 * 110.32757 * 154.37818 * 14 13 12 38 38 H 1.07998 * 120.78404 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.42016 * 180.21318 * 21 20 19 40 40 H 1.08002 * 119.62036 * 179.75038 * 22 21 20 41 41 H 1.08007 * 119.61099 * 179.97438 * 24 23 22 42 42 H 1.08993 * 117.50309 * 359.97438 * 25 18 16 43 43 H 1.09006 * 117.49907 * 145.02188 * 25 18 16 44 44 H 1.08996 * 117.50203 * 214.97739 * 26 18 16 45 45 H 1.08999 * 117.49598 * 0.02562 * 26 18 16 46 46 H 1.08995 * 109.99089 * 121.45835 * 27 15 14 47 47 H 1.08999 * 109.98547 * 242.72908 * 27 15 14 48 48 H 1.08999 * 109.99050 * 58.57104 * 28 9 7 49 49 H 1.09001 * 109.98604 * 297.26529 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3880 -0.0016 10 6 -0.1430 -2.5339 -0.0031 11 6 -0.4079 -3.9383 0.6017 12 6 0.7831 -4.7368 0.0497 13 6 0.4715 -5.3237 -1.3358 14 6 1.4385 -6.5365 -1.3803 15 7 1.4769 -7.0455 0.0042 16 6 1.8004 -8.3014 0.3712 17 8 1.8861 -8.5866 1.5469 18 6 2.0556 -9.3512 -0.6793 19 6 0.8691 -9.7190 -1.5324 20 6 -0.2622 -10.2790 -0.9580 21 6 -1.3315 -10.5970 -1.7810 22 6 -1.2311 -10.3573 -3.1386 23 7 -0.1375 -9.8279 -3.6510 24 6 0.8968 -9.5083 -2.8978 25 6 3.0538 -10.4605 -0.3416 26 6 3.4343 -9.3667 -1.3424 27 6 1.1089 -5.9504 0.9195 28 6 1.9326 -3.7312 -0.0017 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6008 -1.7624 0.6159 31 1 -0.5280 -2.4796 -1.0214 32 1 -1.3528 -4.3468 0.2432 33 1 -0.3859 -3.9056 1.6910 34 1 -0.5670 -5.6487 -1.3984 35 1 0.7035 -4.6083 -2.1248 36 1 2.4322 -6.2173 -1.6943 37 1 1.0550 -7.3021 -2.0548 38 1 -0.3105 -10.4591 0.1057 39 1 -2.2296 -11.0313 -1.3673 40 1 -2.0581 -10.6061 -3.7871 41 1 1.7758 -9.0768 -3.3535 42 1 3.5262 -10.4308 0.6402 43 1 2.8524 -11.4562 -0.7368 44 1 3.4832 -9.6432 -2.3956 45 1 4.1569 -8.6177 -1.0186 46 1 0.2352 -6.2331 1.5066 47 1 1.9441 -5.7215 1.5814 48 1 2.5721 -3.8512 0.8727 49 1 2.5144 -3.8770 -0.9119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041585711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:12 Heat of formation + Delta-G solvation = 47.055424 kcal Electronic energy + Delta-G solvation = -30366.894212 eV Core-core repulsion = 26487.855439 eV Total energy + Delta-G solvation = -3879.038774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.06095 -41.03314 -39.97248 -37.66719 -37.18089 -34.52010 -33.35209 -32.11185 -31.87348 -30.82401 -29.97301 -27.66911 -26.41339 -24.99065 -24.82236 -23.99868 -23.10829 -22.84708 -22.20842 -20.35514 -19.85420 -18.89999 -18.41408 -17.80149 -17.21036 -17.02704 -16.89946 -16.82276 -16.01631 -15.93060 -15.68612 -15.29025 -15.27174 -14.85684 -14.34492 -14.30302 -14.12442 -14.01480 -13.87993 -13.62803 -13.55393 -13.15812 -13.01524 -12.89257 -12.81997 -12.73237 -12.45116 -12.43975 -11.99246 -11.93986 -11.78626 -11.67598 -11.53551 -11.52281 -11.23333 -11.15172 -10.74282 -10.70131 -10.34246 -9.89831 -9.74915 -8.87978 -7.77220 -5.20938 0.07388 0.28285 1.40330 1.47088 1.47608 1.57838 1.79824 2.49357 2.58324 2.86000 3.23322 3.32096 3.35501 3.49543 3.58899 3.62142 3.66239 3.80824 3.83170 3.86218 3.98450 4.05539 4.18096 4.20775 4.29169 4.30697 4.47971 4.55490 4.60431 4.65763 4.67021 4.69654 4.73557 4.82715 4.85818 4.90318 4.91197 4.99926 5.02157 5.13773 5.14895 5.16800 5.24386 5.27646 5.29949 5.47218 5.64208 5.71898 5.82501 6.31115 6.41488 6.98651 7.00175 7.11429 7.78067 8.42221 9.24782 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002753 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.969526 B =10169.355732 C =10686.410019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.625 5.625 10 C 0.160 3.840 11 C -0.117 4.117 12 C -0.069 4.069 13 C -0.108 4.108 14 C 0.107 3.893 15 N -0.605 5.605 16 C 0.565 3.435 17 O -0.579 6.579 18 C -0.127 4.127 19 C -0.098 4.098 20 C -0.076 4.076 21 C -0.164 4.164 22 C 0.091 3.909 23 N -0.501 5.501 24 C 0.104 3.896 25 C -0.130 4.130 26 C -0.136 4.136 27 C 0.131 3.869 28 C 0.152 3.848 29 H 0.247 0.753 30 H 0.069 0.931 31 H -0.006 1.006 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.134 0.866 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.019 0.981 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -24.821 -6.496 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.351 5.351 10 C 0.035 3.965 11 C -0.156 4.156 12 C -0.070 4.070 13 C -0.146 4.146 14 C -0.015 4.015 15 N -0.337 5.337 16 C 0.354 3.646 17 O -0.459 6.459 18 C -0.131 4.131 19 C -0.100 4.100 20 C -0.102 4.102 21 C -0.183 4.183 22 C -0.065 4.065 23 N -0.209 5.209 24 C -0.053 4.053 25 C -0.167 4.167 26 C -0.173 4.173 27 C 0.008 3.992 28 C 0.027 3.973 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.012 0.988 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.178 0.822 40 H 0.197 0.803 41 H 0.190 0.810 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.122 0.878 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.037 0.963 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.339 -24.684 -6.769 25.597 hybrid contribution 0.170 1.290 1.336 1.865 sum 0.509 -23.394 -5.433 24.022 Atomic orbital electron populations 1.70057 1.06116 1.24888 1.58664 1.25585 0.96618 1.00808 1.02787 0.85015 0.78094 0.79540 0.76716 1.19236 1.21835 1.21980 1.19459 0.90944 0.83779 1.42392 0.90337 1.44911 1.02719 1.00685 1.86822 1.21712 0.83904 0.94186 0.96709 1.22715 0.96930 0.95976 0.99938 1.21354 0.96247 0.93097 0.96323 1.22580 1.00013 0.96355 0.95649 1.22579 1.00512 0.96166 0.82263 1.48615 1.66684 1.09190 1.09236 1.19498 0.75434 0.81234 0.88400 1.90683 1.53894 1.80926 1.20389 1.19770 0.92133 1.00853 1.00304 1.19702 0.94477 1.01267 0.94563 1.21635 0.92780 0.94870 1.00906 1.22413 1.00013 1.01057 0.94833 1.23284 0.95783 0.93532 0.93904 1.67805 1.01154 1.11502 1.40481 1.22892 0.97364 0.95623 0.89400 1.23121 0.98000 0.94580 1.01038 1.23318 0.92187 1.01305 1.00496 1.21695 1.00030 0.85231 0.92235 1.21242 0.93855 0.84388 0.97848 0.94369 0.91332 0.98801 0.89527 0.92037 0.89815 0.89967 0.90002 0.88905 0.85322 0.82199 0.80256 0.81037 0.88559 0.86078 0.84801 0.87811 0.91184 0.92291 0.96315 0.95145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.04 10.09 21.65 0.22 -55.82 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 3 Si 0.98 45.57 29.55 68.60 2.03 47.59 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 7 C -0.24 -13.21 10.28 84.03 0.86 -12.35 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -31.77 3.41 -693.04 -2.36 -34.13 16 10 C 0.16 7.70 5.83 86.93 0.51 8.21 16 11 C -0.12 -4.23 5.93 31.56 0.19 -4.05 16 12 C -0.07 -2.24 0.61 -51.86 -0.03 -2.27 16 13 C -0.11 -2.90 5.85 31.56 0.18 -2.71 16 14 C 0.11 2.38 6.67 86.93 0.58 2.96 16 15 N -0.61 -15.98 3.34 -812.90 -2.72 -18.70 16 16 C 0.56 15.22 6.98 87.66 0.61 15.84 16 17 O -0.58 -20.01 17.02 -3.05 -0.05 -20.06 16 18 C -0.13 -2.38 1.42 -53.68 -0.08 -2.45 16 19 C -0.10 -1.70 4.30 -19.77 -0.09 -1.79 16 20 C -0.08 -1.32 9.77 22.47 0.22 -1.10 16 21 C -0.16 -2.24 10.11 22.36 0.23 -2.01 16 22 C 0.09 1.33 11.18 84.69 0.95 2.27 16 23 N -0.50 -9.12 10.36 -195.84 -2.03 -11.15 16 24 C 0.10 1.69 8.69 84.67 0.74 2.43 16 25 C -0.13 -2.03 9.76 30.62 0.30 -1.73 16 26 C -0.14 -1.81 9.45 30.62 0.29 -1.52 16 27 C 0.13 3.96 6.14 86.15 0.53 4.49 16 28 C 0.15 6.11 6.40 86.15 0.55 6.66 16 29 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 30 H 0.07 3.83 5.89 -2.39 -0.01 3.82 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.09 2.70 7.78 -2.39 -0.02 2.68 16 33 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 34 H 0.08 2.09 7.82 -2.39 -0.02 2.07 16 35 H 0.08 2.39 7.94 -2.39 -0.02 2.37 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.77 4.97 -2.39 -0.01 1.76 16 38 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.17 2.08 6.82 -2.91 -0.02 2.06 16 42 H 0.10 1.78 7.98 -2.39 -0.02 1.76 16 43 H 0.12 1.45 8.14 -2.38 -0.02 1.44 16 44 H 0.13 1.10 6.96 -2.39 -0.02 1.09 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 2.12 7.86 -2.39 -0.02 2.10 16 47 H 0.06 1.94 7.42 -2.39 -0.02 1.92 16 48 H 0.02 0.78 7.44 -2.39 -0.02 0.76 16 49 H 0.03 1.19 7.78 -2.39 -0.02 1.17 16 Total: -1.00 -71.72 387.57 3.04 -68.68 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.95 Total: 15.95 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 7.00 Total: 7.64 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -6.89 Total: -119.80 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.72 3.04 -68.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041585711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.734 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds