Wall clock time and date at job start Wed Apr 1 2020 00:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48498 * 109.46996 * 270.00588 * 3 2 1 5 5 H 1.48507 * 109.46932 * 30.00032 * 3 2 1 6 6 H 1.48499 * 109.46985 * 150.00220 * 3 2 1 7 7 C 1.38816 * 119.99513 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99390 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00484 * 359.97438 * 7 2 1 10 10 C 1.47416 * 125.75638 * 0.02562 * 9 7 2 11 11 C 1.54588 * 107.36432 * 179.02317 * 10 9 7 12 12 C 1.53699 * 102.78269 * 339.13073 * 11 10 9 13 13 C 1.52876 * 111.78300 * 154.34343 * 12 11 10 14 14 C 1.54762 * 104.40689 * 121.83717 * 13 12 11 15 15 N 1.48283 * 104.67441 * 23.62733 * 14 13 12 16 16 C 1.34774 * 127.71824 * 141.29472 * 15 14 13 17 17 O 1.21277 * 119.99866 * 174.81336 * 16 15 14 18 18 C 1.50701 * 120.00099 * 354.80865 * 16 15 14 19 19 H 1.09000 * 110.26171 * 336.69871 * 18 16 15 20 20 C 1.54344 * 110.29439 * 98.85036 * 18 16 15 21 21 C 1.54374 * 102.38445 * 145.27888 * 20 18 16 22 22 C 1.51218 * 105.12167 * 333.71103 * 21 20 18 23 23 C 1.38742 * 130.69644 * 197.15365 * 22 21 20 24 24 C 1.38577 * 118.55950 * 179.97438 * 23 22 21 25 25 C 1.38223 * 118.99313 * 359.97438 * 24 23 22 26 26 N 1.31695 * 120.79650 * 0.02562 * 25 24 23 27 27 C 1.32294 * 122.02984 * 0.02562 * 26 25 24 28 28 C 1.48483 * 104.55526 * 321.29241 * 15 14 13 29 29 C 1.47701 * 125.60842 * 180.02562 * 9 7 2 30 30 H 0.96997 * 119.99905 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.84072 * 59.58573 * 10 9 7 32 32 H 1.08999 * 109.86214 * 298.47547 * 10 9 7 33 33 H 1.09000 * 110.74826 * 220.81110 * 11 10 9 34 34 H 1.09002 * 110.90784 * 97.52501 * 11 10 9 35 35 H 1.09000 * 110.45147 * 240.56601 * 13 12 11 36 36 H 1.08997 * 110.44722 * 2.98046 * 13 12 11 37 37 H 1.08989 * 110.39537 * 142.42886 * 14 13 12 38 38 H 1.09000 * 110.39319 * 264.83569 * 14 13 12 39 39 H 1.08996 * 110.82095 * 263.50404 * 20 18 16 40 40 H 1.08996 * 110.82110 * 27.05857 * 20 18 16 41 41 H 1.09003 * 110.30861 * 214.79845 * 21 20 18 42 42 H 1.09002 * 110.31110 * 92.62416 * 21 20 18 43 43 H 1.08003 * 120.71676 * 359.97438 * 23 22 21 44 44 H 1.08004 * 120.50368 * 179.97438 * 24 23 22 45 45 H 1.07994 * 119.60347 * 180.02562 * 25 24 23 46 46 H 1.08998 * 110.47763 * 279.56048 * 28 15 14 47 47 H 1.09001 * 110.47098 * 156.95877 * 28 15 14 48 48 H 1.08991 * 110.39030 * 83.78536 * 29 9 7 49 49 H 1.09002 * 110.38834 * 321.51105 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5360 -0.0005 11 6 -0.4523 -4.0500 -0.0257 12 6 0.8503 -4.6558 -0.5722 13 6 1.0364 -6.1039 -0.1190 14 6 1.1443 -6.9089 -1.4363 15 7 1.5990 -5.9208 -2.4442 16 6 2.4794 -6.1111 -3.4466 17 8 2.6815 -5.2273 -4.2522 18 6 3.2129 -7.4221 -3.5666 19 1 3.2491 -7.9242 -2.5998 20 6 2.5287 -8.3243 -4.6154 21 6 3.7270 -9.0642 -5.2478 22 6 4.9073 -8.1384 -5.0575 23 6 6.1484 -8.1157 -5.6773 24 6 7.0576 -7.1387 -5.3040 25 6 6.6974 -6.2247 -4.3318 26 7 5.5100 -6.2763 -3.7645 27 6 4.6150 -7.1938 -4.0925 28 6 0.8672 -4.6750 -2.1019 29 6 1.9355 -3.7333 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5614 -2.0567 -0.8847 32 1 -0.5587 -2.0868 0.9006 33 1 -1.2868 -4.2617 -0.6941 34 1 -0.6595 -4.4213 0.9780 35 1 1.9510 -6.2055 0.4653 36 1 0.1757 -6.4346 0.4622 37 1 1.8758 -7.7102 -1.3330 38 1 0.1716 -7.3147 -1.7142 39 1 1.8479 -9.0278 -4.1363 40 1 2.0065 -7.7246 -5.3608 41 1 3.5481 -9.2361 -6.3092 42 1 3.9013 -10.0100 -4.7346 43 1 6.4004 -8.8436 -6.4343 44 1 8.0328 -7.0922 -5.7658 45 1 7.3981 -5.4589 -4.0336 46 1 -0.1492 -4.7098 -2.4940 47 1 1.3961 -3.8038 -2.4883 48 1 2.1930 -4.0335 1.0151 49 1 2.8206 -3.7489 -0.6364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041605870.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:50 Heat of formation + Delta-G solvation = 38.854650 kcal Electronic energy + Delta-G solvation = -30245.362799 eV Core-core repulsion = 26365.968413 eV Total energy + Delta-G solvation = -3879.394386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17452 -39.89842 -38.26938 -36.19460 -35.56321 -32.85347 -32.56103 -30.56274 -29.63153 -29.09781 -28.79993 -27.78904 -25.60633 -24.24042 -23.74119 -22.29468 -22.14582 -21.54334 -20.18908 -19.10671 -18.67965 -17.42172 -16.89384 -16.57828 -16.40070 -15.64017 -15.51670 -15.02594 -14.63007 -14.51405 -14.14949 -13.91247 -13.71791 -13.62101 -13.37681 -13.35388 -13.06315 -12.86540 -12.42577 -12.20374 -11.94304 -11.86829 -11.82582 -11.70681 -11.53521 -11.36194 -11.28623 -11.16783 -10.80801 -10.71993 -10.11493 -9.94818 -9.91262 -9.88076 -9.75048 -9.60866 -9.53512 -9.34565 -8.88633 -8.53256 -8.47932 -6.74215 -5.63049 -2.95397 0.91751 1.14113 2.75552 3.06304 3.47255 3.52205 3.53625 3.61947 3.74249 4.14441 4.40196 4.51888 4.58008 4.67730 4.71437 4.74467 4.83761 4.94276 5.00973 5.04761 5.13461 5.21760 5.30783 5.35131 5.44115 5.46495 5.54553 5.59919 5.60661 5.63248 5.76586 5.84525 5.90065 5.94267 5.99105 5.99543 6.08940 6.15714 6.28808 6.41560 6.46429 6.53013 6.59416 6.65529 6.84969 6.91321 7.63825 7.67782 7.75491 7.89866 7.92612 8.33452 8.35808 9.30618 9.90700 10.56984 11.49057 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.003118 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.226815 B = 8977.790183 C =10462.990100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.131 4.131 12 C -0.085 4.085 13 C -0.120 4.120 14 C 0.100 3.900 15 N -0.622 5.622 16 C 0.547 3.453 17 O -0.526 6.526 18 C -0.058 4.058 19 H 0.111 0.889 20 C -0.105 4.105 21 C -0.074 4.074 22 C -0.149 4.149 23 C -0.066 4.066 24 C -0.174 4.174 25 C 0.107 3.893 26 N -0.462 5.462 27 C 0.144 3.856 28 C 0.130 3.870 29 C 0.151 3.849 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.019 0.981 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -24.468 -8.103 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.170 4.170 12 C -0.087 4.087 13 C -0.159 4.159 14 C -0.023 4.023 15 N -0.357 5.357 16 C 0.334 3.666 17 O -0.401 6.401 18 C -0.080 4.080 19 H 0.129 0.871 20 C -0.143 4.143 21 C -0.112 4.112 22 C -0.151 4.151 23 C -0.092 4.092 24 C -0.194 4.194 25 C -0.051 4.051 26 N -0.169 5.169 27 C 0.005 3.995 28 C 0.008 3.992 29 C 0.025 3.975 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.175 0.825 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.037 0.963 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.773 -23.123 -7.989 25.136 hybrid contribution 0.782 0.407 -0.516 1.022 sum 6.555 -22.716 -8.505 25.127 Atomic orbital electron populations 1.69956 1.04816 1.24863 1.57523 1.24768 0.95712 0.97553 1.02472 0.86134 0.78579 0.83604 0.77582 1.21633 1.21750 1.20746 1.19061 0.90423 0.82446 1.43233 0.90565 1.44627 1.01550 0.99800 1.87156 1.21259 0.84342 0.88105 1.01046 1.22819 0.94881 0.99684 0.99574 1.21625 0.98668 0.94134 0.94292 1.22407 1.02772 0.94553 0.96159 1.22518 0.99437 0.91967 0.88385 1.49166 1.42848 1.14012 1.29641 1.19631 0.78375 0.88529 0.80067 1.90739 1.64181 1.44362 1.40865 1.20816 0.90269 0.95496 1.01424 0.87093 1.22309 0.97275 0.97553 0.97201 1.20941 0.90895 0.97212 1.02150 1.21372 0.96283 0.99128 0.98358 1.21004 0.91978 0.97937 0.98310 1.22095 1.00811 0.96793 0.99671 1.22693 0.92344 0.97307 0.92727 1.66835 1.01799 1.21343 1.26968 1.21103 0.94070 0.90742 0.93543 1.22160 0.95925 0.87245 0.93845 1.21396 0.93763 0.85788 0.96581 0.93889 0.93611 0.93955 0.92002 0.92014 0.90788 0.90187 0.90811 0.90995 0.89088 0.89800 0.89925 0.89528 0.85001 0.84521 0.82470 0.91467 0.89122 0.96326 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.81 10.33 55.49 0.57 -27.24 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.50 10.28 -15.06 -0.15 -6.65 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.90 3.42 -170.26 -0.58 -16.48 16 10 C 0.18 4.32 5.34 -2.71 -0.01 4.30 16 11 C -0.13 -2.35 5.83 -25.53 -0.15 -2.50 16 12 C -0.09 -1.46 0.81 -153.97 -0.12 -1.59 16 13 C -0.12 -1.50 6.32 -25.87 -0.16 -1.67 16 14 C 0.10 1.08 6.96 -2.13 -0.01 1.07 16 15 N -0.62 -9.46 3.33 -169.55 -0.56 -10.02 16 16 C 0.55 9.00 6.83 -10.99 -0.08 8.93 16 17 O -0.53 -11.21 16.81 5.56 0.09 -11.12 16 18 C -0.06 -0.70 2.95 -91.84 -0.27 -0.97 16 19 H 0.11 1.10 6.41 -51.93 -0.33 0.77 16 20 C -0.11 -0.91 6.58 -25.31 -0.17 -1.07 16 21 C -0.07 -0.56 6.77 -26.91 -0.18 -0.74 16 22 C -0.15 -1.61 6.16 -104.21 -0.64 -2.25 16 23 C -0.07 -0.62 10.17 -39.27 -0.40 -1.02 16 24 C -0.17 -1.66 10.12 -39.46 -0.40 -2.06 16 25 C 0.11 1.32 11.18 -17.62 -0.20 1.12 16 26 N -0.46 -7.31 10.34 -9.19 -0.09 -7.40 16 27 C 0.14 2.00 6.18 -82.04 -0.51 1.49 16 28 C 0.13 2.31 6.08 -2.96 -0.02 2.30 16 29 C 0.15 3.26 5.93 -3.14 -0.02 3.24 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.05 1.24 7.40 -51.93 -0.38 0.86 16 32 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 33 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 34 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 35 H 0.07 0.92 7.66 -51.93 -0.40 0.53 16 36 H 0.08 0.85 7.63 -51.93 -0.40 0.45 16 37 H 0.07 0.62 6.43 -51.94 -0.33 0.28 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.85 7.91 -51.93 -0.41 0.43 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.07 1.12 7.62 -51.93 -0.40 0.73 16 47 H 0.09 2.03 7.65 -51.93 -0.40 1.63 16 48 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 49 H 0.04 0.88 8.00 -51.93 -0.42 0.47 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -37.08 385.62 -10.96 -48.03 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.58 Total: -1.19 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.59 Total: 1.56 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.67 Total: -61.15 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.08 -10.96 -48.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041605870.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.886 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds