Wall clock time and date at job start Wed Apr 1 2020 00:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00362 * 2 1 4 4 H 1.48499 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46952 * 300.00233 * 3 2 1 6 6 H 1.48497 * 109.46563 * 59.99877 * 3 2 1 7 7 C 1.38811 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00260 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.47541 * 125.67136 * 0.03481 * 9 7 2 11 11 C 1.55136 * 104.97790 * 203.87493 * 10 9 7 12 12 C 1.53887 * 101.45885 * 324.27155 * 11 10 9 13 13 C 1.53037 * 111.36649 * 273.26823 * 12 11 10 14 14 C 1.54719 * 104.58195 * 238.91513 * 13 12 11 15 15 N 1.48455 * 104.56803 * 336.47960 * 14 13 12 16 16 C 1.34779 * 127.65409 * 218.71630 * 15 14 13 17 17 O 1.21281 * 119.99953 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00074 * 359.93986 * 16 15 14 19 19 H 1.09001 * 115.55126 * 34.33123 * 18 16 15 20 20 C 1.53002 * 117.50249 * 248.62423 * 18 16 15 21 21 C 1.52997 * 60.00222 * 252.50945 * 20 18 16 22 22 H 1.08999 * 117.50037 * 107.48332 * 21 20 18 23 23 C 1.50701 * 117.52010 * 252.52014 * 21 20 18 24 24 C 1.38670 * 120.42159 * 188.62831 * 23 21 20 25 25 C 1.38626 * 118.42179 * 180.02562 * 24 23 21 26 26 C 1.38232 * 119.16216 * 359.97438 * 25 24 23 27 27 N 1.31855 * 120.75911 * 0.02562 * 26 25 24 28 28 C 1.31885 * 121.72718 * 359.69683 * 27 26 25 29 29 C 1.48445 * 104.61248 * 38.66906 * 15 14 13 30 30 C 1.47344 * 125.67333 * 180.02562 * 9 7 2 31 31 H 0.96998 * 119.99293 * 359.97438 * 1 2 3 32 32 H 1.08991 * 110.34034 * 322.75586 * 10 9 7 33 33 H 1.09003 * 110.33046 * 84.89979 * 10 9 7 34 34 H 1.08998 * 111.03015 * 206.22826 * 11 10 9 35 35 H 1.09000 * 111.02781 * 82.31457 * 11 10 9 36 36 H 1.09002 * 110.43525 * 357.72787 * 13 12 11 37 37 H 1.08998 * 110.43382 * 120.10900 * 13 12 11 38 38 H 1.09005 * 110.39095 * 95.18492 * 14 13 12 39 39 H 1.08994 * 110.40012 * 217.59272 * 14 13 12 40 40 H 1.09000 * 117.49853 * 0.02562 * 20 18 16 41 41 H 1.08997 * 117.49817 * 145.01979 * 20 18 16 42 42 H 1.08005 * 120.78727 * 0.02562 * 24 23 21 43 43 H 1.07998 * 120.42180 * 179.97438 * 25 24 23 44 44 H 1.07989 * 119.61885 * 179.97438 * 26 25 24 45 45 H 1.08006 * 119.61651 * 180.31352 * 28 27 26 46 46 H 1.09000 * 110.46391 * 202.95328 * 29 15 14 47 47 H 1.09000 * 110.46387 * 80.36232 * 29 15 14 48 48 H 1.09008 * 109.97167 * 58.70135 * 30 9 7 49 49 H 1.09003 * 109.96765 * 297.44080 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1427 -2.5338 -0.0030 11 6 -0.4069 -3.9374 0.6028 12 6 0.7825 -4.7395 0.0459 13 6 0.4693 -5.3124 -1.3382 14 6 0.6305 -6.8422 -1.1722 15 7 1.5373 -6.9979 -0.0071 16 6 2.5250 -7.9009 0.1527 17 8 3.1861 -7.9030 1.1694 18 6 2.8074 -8.9085 -0.9318 19 1 2.6557 -8.5561 -1.9520 20 6 2.4856 -10.3746 -0.6352 21 6 3.9413 -9.9070 -0.6905 22 1 4.4830 -9.8350 0.2526 23 6 4.7630 -10.3278 -1.8817 24 6 6.1293 -10.0926 -1.9106 25 6 6.8449 -10.4964 -3.0271 26 6 6.1775 -11.1162 -4.0670 27 7 4.8768 -11.3236 -4.0050 28 6 4.1653 -10.9577 -2.9565 29 6 1.1142 -5.9370 0.9411 30 6 1.9324 -3.7307 -0.0017 31 1 -0.4849 0.8401 0.0004 32 1 -0.6006 -1.7619 0.6154 33 1 -0.5276 -2.4804 -1.0214 34 1 -1.3536 -4.3446 0.2481 35 1 -0.3806 -3.9045 1.6920 36 1 -0.5518 -5.0667 -1.6297 37 1 1.1765 -4.9332 -2.0759 38 1 -0.3344 -7.3057 -0.9666 39 1 1.0787 -7.2762 -2.0659 40 1 2.0692 -10.6103 0.3442 41 1 2.1220 -10.9869 -1.4603 42 1 6.6242 -9.6063 -1.0828 43 1 7.9103 -10.3289 -3.0839 44 1 6.7276 -11.4334 -4.9404 45 1 3.1025 -11.1490 -2.9396 46 1 1.9274 -5.6891 1.6232 47 1 0.2317 -6.2529 1.4974 48 1 2.5701 -3.8511 0.8741 49 1 2.5167 -3.8750 -0.9106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041707979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:25 Heat of formation + Delta-G solvation = 64.140509 kcal Electronic energy + Delta-G solvation = -29196.742234 eV Core-core repulsion = 25318.444326 eV Total energy + Delta-G solvation = -3878.297909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88837 -40.16399 -38.80590 -36.76695 -35.66012 -32.80532 -32.66095 -31.23341 -30.37778 -29.25993 -28.50790 -26.22401 -24.90192 -24.56542 -23.76838 -22.85841 -22.60434 -21.16228 -20.29614 -19.18781 -18.65927 -17.86017 -17.23023 -16.81573 -16.52300 -15.74463 -15.65499 -15.53044 -14.81774 -14.64038 -14.21897 -14.15713 -13.95579 -13.86764 -13.48866 -13.37846 -12.97322 -12.88363 -12.62659 -12.38061 -12.11084 -11.97586 -11.86766 -11.51175 -11.41178 -11.31326 -11.10267 -10.89305 -10.84744 -10.80988 -10.19552 -10.08287 -10.05575 -9.96860 -9.88929 -9.78006 -9.76162 -9.50640 -9.15367 -8.72126 -8.60997 -6.83017 -5.66052 -3.06960 0.69308 0.92996 2.41532 2.84983 3.32857 3.39331 3.45203 3.47537 3.69983 3.96557 4.22826 4.31339 4.43941 4.48124 4.49902 4.60363 4.65921 4.73847 4.76792 4.89218 4.93433 5.04118 5.14388 5.27901 5.29375 5.40099 5.43473 5.47080 5.53761 5.57942 5.65699 5.75997 5.80922 5.81871 5.92014 5.97319 5.97493 6.05515 6.19811 6.32765 6.35753 6.38053 6.55388 6.61083 6.76752 6.85790 7.49667 7.56248 7.61547 7.62956 7.84671 8.13489 8.35347 9.22051 9.82486 10.47681 11.38133 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.002296 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.375056 B =12192.232372 C =13112.505963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.154 3.846 11 C -0.132 4.132 12 C -0.083 4.083 13 C -0.116 4.116 14 C 0.101 3.899 15 N -0.616 5.616 16 C 0.562 3.438 17 O -0.544 6.544 18 C -0.170 4.170 19 H 0.125 0.875 20 C -0.142 4.142 21 C -0.083 4.083 22 H 0.130 0.870 23 C -0.102 4.102 24 C -0.065 4.065 25 C -0.169 4.169 26 C 0.091 3.909 27 N -0.482 5.482 28 C 0.098 3.902 29 C 0.122 3.878 30 C 0.152 3.848 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.012 0.988 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.024 0.976 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -23.769 -5.049 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.171 4.171 12 C -0.085 4.085 13 C -0.155 4.155 14 C -0.021 4.021 15 N -0.349 5.349 16 C 0.351 3.649 17 O -0.422 6.422 18 C -0.191 4.191 19 H 0.143 0.857 20 C -0.179 4.179 21 C -0.102 4.102 22 H 0.148 0.852 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.188 4.188 26 C -0.065 4.065 27 N -0.190 5.190 28 C -0.059 4.059 29 C 0.000 4.000 30 C 0.026 3.974 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.173 0.827 45 H 0.172 0.828 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.042 0.958 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.409 -24.022 -5.206 24.972 hybrid contribution 0.898 1.436 0.501 1.766 sum 5.307 -22.586 -4.705 23.673 Atomic orbital electron populations 1.69808 1.04853 1.24604 1.57921 1.24774 0.95739 0.97669 1.02564 0.86007 0.78691 0.83646 0.77239 1.20555 1.21776 1.21736 1.19128 0.90528 0.82483 1.42672 0.90547 1.44628 1.01926 0.99651 1.86841 1.21954 0.84629 0.92271 0.98189 1.22968 0.94958 0.98922 1.00211 1.21586 0.98343 0.94168 0.94384 1.22472 1.03014 0.92784 0.97183 1.22597 0.93419 0.97587 0.88540 1.49067 1.32906 1.32412 1.20531 1.19077 0.78599 0.80332 0.86883 1.90703 1.48975 1.72414 1.30100 1.22323 1.05417 0.91409 0.99944 0.85696 1.23136 0.97054 0.93432 1.04301 1.20977 0.89947 1.01310 0.97946 0.85201 1.20137 0.94467 0.99817 0.96001 1.21508 0.93319 0.96082 0.98203 1.22179 1.01645 1.00174 0.94829 1.22800 0.90449 0.95205 0.98093 1.67716 1.07997 1.17800 1.25534 1.22691 1.00283 0.94440 0.88522 1.22352 0.99975 0.85563 0.92139 1.21233 0.92755 0.85508 0.97889 0.93823 0.87715 0.96976 0.91978 0.91898 0.89983 0.90613 0.90912 0.90586 0.87401 0.87301 0.84482 0.84556 0.82714 0.82750 0.89770 0.90989 0.95834 0.96156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.40 3.41 -170.36 -0.58 -15.98 16 10 C 0.15 3.63 5.82 -2.34 -0.01 3.61 16 11 C -0.13 -2.33 5.83 -25.14 -0.15 -2.48 16 12 C -0.08 -1.38 0.79 -153.93 -0.12 -1.50 16 13 C -0.12 -1.59 6.23 -25.81 -0.16 -1.75 16 14 C 0.10 1.09 6.95 -2.06 -0.01 1.08 16 15 N -0.62 -8.26 3.33 -169.36 -0.56 -8.82 16 16 C 0.56 7.80 7.70 -10.99 -0.08 7.71 16 17 O -0.54 -9.47 16.54 5.56 0.09 -9.38 16 18 C -0.17 -1.69 5.22 -91.77 -0.48 -2.17 16 19 H 0.13 1.11 7.06 -51.93 -0.37 0.75 16 20 C -0.14 -1.08 9.57 -26.73 -0.26 -1.33 16 21 C -0.08 -0.76 5.58 -91.77 -0.51 -1.27 16 22 H 0.13 1.35 7.67 -51.93 -0.40 0.95 16 23 C -0.10 -0.92 5.62 -104.48 -0.59 -1.51 16 24 C -0.07 -0.55 9.89 -39.28 -0.39 -0.94 16 25 C -0.17 -1.25 10.11 -39.44 -0.40 -1.65 16 26 C 0.09 0.75 11.18 -17.54 -0.20 0.55 16 27 N -0.48 -4.85 10.36 -13.25 -0.14 -4.99 16 28 C 0.10 0.87 10.48 -17.55 -0.18 0.69 16 29 C 0.12 1.82 6.19 -2.89 -0.02 1.80 16 30 C 0.15 3.21 6.48 -3.56 -0.02 3.18 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.11 2.80 5.89 -51.93 -0.31 2.50 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 35 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.08 1.06 7.49 -51.93 -0.39 0.67 16 37 H 0.08 1.13 7.32 -51.93 -0.38 0.75 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.67 6.79 -51.93 -0.35 0.32 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.58 6.20 -51.93 -0.32 0.26 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.16 1.06 6.04 -52.48 -0.32 0.74 16 46 H 0.08 1.42 7.17 -51.93 -0.37 1.05 16 47 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 48 H 0.02 0.52 7.41 -51.92 -0.38 0.13 16 49 H 0.02 0.44 7.38 -51.93 -0.38 0.06 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -33.60 388.83 -10.91 -44.51 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.28 Total: 0.55 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.84 Total: -2.73 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.72 Total: -55.96 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.60 -10.91 -44.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041707979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.648 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds