Wall clock time and date at job start Wed Apr 1 2020 00:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00362 * 2 1 4 4 H 1.48499 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46952 * 300.00233 * 3 2 1 6 6 H 1.48497 * 109.46563 * 59.99877 * 3 2 1 7 7 C 1.38811 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00260 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.47541 * 125.67136 * 0.03481 * 9 7 2 11 11 C 1.55136 * 104.97790 * 203.87493 * 10 9 7 12 12 C 1.53887 * 101.45885 * 324.27155 * 11 10 9 13 13 C 1.53037 * 111.36649 * 273.26823 * 12 11 10 14 14 C 1.54719 * 104.58195 * 238.91513 * 13 12 11 15 15 N 1.48455 * 104.56803 * 336.47960 * 14 13 12 16 16 C 1.34779 * 127.65409 * 218.71630 * 15 14 13 17 17 O 1.21281 * 119.99953 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00074 * 359.93986 * 16 15 14 19 19 H 1.09001 * 115.55126 * 34.33123 * 18 16 15 20 20 C 1.53002 * 117.50249 * 248.62423 * 18 16 15 21 21 C 1.52997 * 60.00222 * 252.50945 * 20 18 16 22 22 H 1.08999 * 117.50037 * 107.48332 * 21 20 18 23 23 C 1.50701 * 117.52010 * 252.52014 * 21 20 18 24 24 C 1.38670 * 120.42159 * 188.62831 * 23 21 20 25 25 C 1.38626 * 118.42179 * 180.02562 * 24 23 21 26 26 C 1.38232 * 119.16216 * 359.97438 * 25 24 23 27 27 N 1.31855 * 120.75911 * 0.02562 * 26 25 24 28 28 C 1.31885 * 121.72718 * 359.69683 * 27 26 25 29 29 C 1.48445 * 104.61248 * 38.66906 * 15 14 13 30 30 C 1.47344 * 125.67333 * 180.02562 * 9 7 2 31 31 H 0.96998 * 119.99293 * 359.97438 * 1 2 3 32 32 H 1.08991 * 110.34034 * 322.75586 * 10 9 7 33 33 H 1.09003 * 110.33046 * 84.89979 * 10 9 7 34 34 H 1.08998 * 111.03015 * 206.22826 * 11 10 9 35 35 H 1.09000 * 111.02781 * 82.31457 * 11 10 9 36 36 H 1.09002 * 110.43525 * 357.72787 * 13 12 11 37 37 H 1.08998 * 110.43382 * 120.10900 * 13 12 11 38 38 H 1.09005 * 110.39095 * 95.18492 * 14 13 12 39 39 H 1.08994 * 110.40012 * 217.59272 * 14 13 12 40 40 H 1.09000 * 117.49853 * 0.02562 * 20 18 16 41 41 H 1.08997 * 117.49817 * 145.01979 * 20 18 16 42 42 H 1.08005 * 120.78727 * 0.02562 * 24 23 21 43 43 H 1.07998 * 120.42180 * 179.97438 * 25 24 23 44 44 H 1.07989 * 119.61885 * 179.97438 * 26 25 24 45 45 H 1.08006 * 119.61651 * 180.31352 * 28 27 26 46 46 H 1.09000 * 110.46391 * 202.95328 * 29 15 14 47 47 H 1.09000 * 110.46387 * 80.36232 * 29 15 14 48 48 H 1.09008 * 109.97167 * 58.70135 * 30 9 7 49 49 H 1.09003 * 109.96765 * 297.44080 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1427 -2.5338 -0.0030 11 6 -0.4069 -3.9374 0.6028 12 6 0.7825 -4.7395 0.0459 13 6 0.4693 -5.3124 -1.3382 14 6 0.6305 -6.8422 -1.1722 15 7 1.5373 -6.9979 -0.0071 16 6 2.5250 -7.9009 0.1527 17 8 3.1861 -7.9030 1.1694 18 6 2.8074 -8.9085 -0.9318 19 1 2.6557 -8.5561 -1.9520 20 6 2.4856 -10.3746 -0.6352 21 6 3.9413 -9.9070 -0.6905 22 1 4.4830 -9.8350 0.2526 23 6 4.7630 -10.3278 -1.8817 24 6 6.1293 -10.0926 -1.9106 25 6 6.8449 -10.4964 -3.0271 26 6 6.1775 -11.1162 -4.0670 27 7 4.8768 -11.3236 -4.0050 28 6 4.1653 -10.9577 -2.9565 29 6 1.1142 -5.9370 0.9411 30 6 1.9324 -3.7307 -0.0017 31 1 -0.4849 0.8401 0.0004 32 1 -0.6006 -1.7619 0.6154 33 1 -0.5276 -2.4804 -1.0214 34 1 -1.3536 -4.3446 0.2481 35 1 -0.3806 -3.9045 1.6920 36 1 -0.5518 -5.0667 -1.6297 37 1 1.1765 -4.9332 -2.0759 38 1 -0.3344 -7.3057 -0.9666 39 1 1.0787 -7.2762 -2.0659 40 1 2.0692 -10.6103 0.3442 41 1 2.1220 -10.9869 -1.4603 42 1 6.6242 -9.6063 -1.0828 43 1 7.9103 -10.3289 -3.0839 44 1 6.7276 -11.4334 -4.9404 45 1 3.1025 -11.1490 -2.9396 46 1 1.9274 -5.6891 1.6232 47 1 0.2317 -6.2529 1.4974 48 1 2.5701 -3.8511 0.8741 49 1 2.5167 -3.8750 -0.9106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041707979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:24 Heat of formation + Delta-G solvation = 44.478680 kcal Electronic energy + Delta-G solvation = -29197.594835 eV Core-core repulsion = 25318.444326 eV Total energy + Delta-G solvation = -3879.150510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71248 -41.13189 -39.97744 -37.71366 -37.08494 -34.51082 -33.37557 -32.16152 -31.72126 -30.58663 -30.02449 -27.74784 -26.28319 -25.34942 -24.54594 -23.91660 -23.72363 -22.17605 -21.79640 -20.32422 -19.87409 -18.87173 -18.58988 -17.96206 -17.27465 -17.03010 -16.65228 -16.59051 -16.23898 -15.70771 -15.61890 -15.27397 -15.10755 -14.86305 -14.59451 -14.31716 -14.15810 -13.98198 -13.90208 -13.60894 -13.24160 -13.07656 -13.00481 -12.93657 -12.73160 -12.69803 -12.53889 -12.37411 -12.09081 -12.01242 -11.82802 -11.57850 -11.53575 -11.43740 -11.20939 -10.93781 -10.76002 -10.66797 -10.40321 -9.80963 -9.73617 -8.90132 -7.80254 -5.24067 0.08977 0.31502 1.43808 1.44237 1.44646 1.54955 1.86792 2.46542 2.65050 3.02320 3.24410 3.29923 3.46967 3.58046 3.62261 3.65407 3.72046 3.77449 3.87911 3.92729 4.01025 4.07630 4.11266 4.25274 4.31077 4.35919 4.41039 4.56252 4.59929 4.66822 4.69768 4.71792 4.78213 4.85570 4.88654 4.90060 4.96808 5.02956 5.05499 5.09419 5.20109 5.21803 5.34250 5.35654 5.38282 5.44609 5.67643 5.75638 5.82648 6.30456 6.54497 7.01119 7.08809 7.09791 7.75742 8.39692 9.21312 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.002296 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.375056 B =12192.232372 C =13112.505963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.063 4.063 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.626 5.626 10 C 0.156 3.844 11 C -0.114 4.114 12 C -0.073 4.073 13 C -0.115 4.115 14 C 0.109 3.891 15 N -0.618 5.618 16 C 0.556 3.444 17 O -0.590 6.590 18 C -0.175 4.175 19 H 0.141 0.859 20 C -0.116 4.116 21 C -0.088 4.088 22 H 0.111 0.889 23 C -0.109 4.109 24 C -0.082 4.082 25 C -0.167 4.167 26 C 0.082 3.918 27 N -0.507 5.507 28 C 0.092 3.908 29 C 0.127 3.873 30 C 0.150 3.850 31 H 0.248 0.752 32 H 0.069 0.931 33 H -0.006 1.006 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.178 0.822 45 H 0.175 0.825 46 H 0.056 0.944 47 H 0.096 0.904 48 H 0.007 0.993 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -26.006 -6.390 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.352 5.352 10 C 0.031 3.969 11 C -0.153 4.153 12 C -0.074 4.074 13 C -0.153 4.153 14 C -0.012 4.012 15 N -0.350 5.350 16 C 0.346 3.654 17 O -0.472 6.472 18 C -0.195 4.195 19 H 0.159 0.841 20 C -0.153 4.153 21 C -0.107 4.107 22 H 0.129 0.871 23 C -0.111 4.111 24 C -0.108 4.108 25 C -0.187 4.187 26 C -0.074 4.074 27 N -0.216 5.216 28 C -0.064 4.064 29 C 0.004 3.996 30 C 0.025 3.975 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.012 0.988 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.195 0.805 45 H 0.192 0.808 46 H 0.074 0.926 47 H 0.114 0.886 48 H 0.025 0.975 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 3.775 -26.284 -6.568 27.354 hybrid contribution 1.172 2.167 0.930 2.634 sum 4.947 -24.116 -5.637 25.256 Atomic orbital electron populations 1.70051 1.05969 1.25002 1.58422 1.25582 0.96712 1.00724 1.02591 0.85015 0.77889 0.79479 0.76976 1.19660 1.21546 1.21565 1.19418 0.90740 0.84088 1.42829 0.91080 1.44935 1.03088 1.00479 1.86710 1.21768 0.83392 0.94876 0.96823 1.22823 0.97163 0.95375 0.99918 1.21455 0.95544 0.93508 0.96911 1.22458 1.03376 0.94936 0.94550 1.22766 0.94561 0.95344 0.88544 1.49165 1.33216 1.31680 1.20975 1.19785 0.77745 0.80674 0.87164 1.90681 1.50469 1.73762 1.32255 1.22269 1.06700 0.91512 0.99041 0.84091 1.23280 0.95184 0.91489 1.05348 1.20878 0.90738 1.01711 0.97371 0.87104 1.20146 0.94644 1.00307 0.96006 1.21762 0.93687 0.96424 0.98895 1.22446 1.02825 0.99318 0.94091 1.23250 0.90255 0.94879 0.99033 1.67750 1.08950 1.18705 1.26197 1.22976 1.01215 0.94132 0.88123 1.22170 0.99953 0.85649 0.91846 1.21359 0.94380 0.85206 0.96568 0.94200 0.91278 0.98761 0.88203 0.91991 0.88480 0.92251 0.87707 0.88003 0.87497 0.84287 0.84150 0.82223 0.80506 0.80805 0.92584 0.88579 0.97485 0.96936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 10.09 21.65 0.22 -56.04 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.24 -14.01 10.28 84.03 0.86 -13.14 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.63 -32.97 3.41 -692.90 -2.36 -35.33 16 10 C 0.16 7.50 5.82 86.91 0.51 8.00 16 11 C -0.11 -3.92 5.83 31.63 0.18 -3.73 16 12 C -0.07 -2.33 0.79 -51.81 -0.04 -2.37 16 13 C -0.12 -2.88 6.23 31.19 0.19 -2.68 16 14 C 0.11 1.93 6.95 86.59 0.60 2.53 16 15 N -0.62 -15.33 3.33 -808.12 -2.69 -18.02 16 16 C 0.56 14.79 7.70 87.66 0.67 15.46 16 17 O -0.59 -20.86 16.54 -3.03 -0.05 -20.91 16 18 C -0.17 -3.08 5.22 -11.54 -0.06 -3.14 16 19 H 0.14 2.04 7.06 -2.39 -0.02 2.02 16 20 C -0.12 -1.42 9.57 30.59 0.29 -1.13 16 21 C -0.09 -1.51 5.58 -11.54 -0.06 -1.57 16 22 H 0.11 2.34 7.67 -2.39 -0.02 2.32 16 23 C -0.11 -1.80 5.62 -19.77 -0.11 -1.91 16 24 C -0.08 -1.31 9.89 22.47 0.22 -1.09 16 25 C -0.17 -2.22 10.11 22.36 0.23 -1.99 16 26 C 0.08 1.19 11.18 84.69 0.95 2.14 16 27 N -0.51 -9.24 10.36 -195.84 -2.03 -11.27 16 28 C 0.09 1.44 10.48 84.67 0.89 2.33 16 29 C 0.13 3.63 6.19 86.05 0.53 4.17 16 30 C 0.15 6.52 6.48 86.23 0.56 7.08 16 31 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.07 3.83 5.89 -2.39 -0.01 3.82 16 33 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.10 2.70 7.70 -2.39 -0.02 2.68 16 35 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16 36 H 0.10 2.17 7.49 -2.39 -0.02 2.16 16 37 H 0.06 1.69 7.32 -2.39 -0.02 1.67 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.10 1.33 6.79 -2.39 -0.02 1.32 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.14 0.87 6.20 -2.39 -0.01 0.86 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 44 H 0.18 1.57 8.06 -2.92 -0.02 1.54 16 45 H 0.18 1.80 6.04 -2.91 -0.02 1.78 16 46 H 0.06 1.93 7.17 -2.39 -0.02 1.92 16 47 H 0.10 2.33 7.91 -2.39 -0.02 2.31 16 48 H 0.01 0.33 7.41 -2.38 -0.02 0.31 16 49 H 0.01 0.57 7.38 -2.39 -0.02 0.55 16 Total: -1.00 -77.19 388.83 2.95 -74.24 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.96 Total: 13.08 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 6.88 Total: 5.77 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.87 Total: -120.66 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -77.19 2.95 -74.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041707979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.721 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds