Wall clock time and date at job start Wed Apr 1 2020 01:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48505 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47258 * 299.99539 * 3 2 1 6 6 H 1.48503 * 109.47235 * 60.00285 * 3 2 1 7 7 C 1.38813 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99422 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.47168 * 125.59311 * 359.96822 * 9 7 2 11 11 C 1.54658 * 107.35001 * 179.14152 * 10 9 7 12 12 C 1.53302 * 102.71722 * 339.48917 * 11 10 9 13 13 C 1.53308 * 112.22188 * 271.82421 * 12 11 10 14 14 C 1.54660 * 102.72002 * 204.98582 * 13 12 11 15 15 N 1.47170 * 107.34705 * 20.50704 * 14 13 12 16 16 C 1.34783 * 125.59064 * 180.90263 * 15 14 13 17 17 O 1.21513 * 119.99590 * 180.02562 * 16 15 14 18 18 C 1.48167 * 120.00073 * 0.03081 * 16 15 14 19 19 C 1.39306 * 119.72109 * 179.97438 * 18 16 15 20 20 C 1.38590 * 119.05924 * 180.02562 * 19 18 16 21 21 C 1.38625 * 118.48819 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.32522 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.49797 * 188.59938 * 22 21 20 24 24 C 1.53004 * 117.49825 * 119.97738 * 22 21 20 25 25 C 1.38558 * 119.35395 * 359.97438 * 21 20 19 26 26 N 1.31524 * 120.90318 * 359.97438 * 25 21 20 27 27 C 1.47782 * 108.81511 * 1.17208 * 15 14 13 28 28 C 1.47782 * 125.59406 * 180.02562 * 9 7 2 29 29 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87104 * 59.69919 * 10 9 7 31 31 H 1.09006 * 109.98549 * 298.64581 * 10 9 7 32 32 H 1.09004 * 110.76364 * 221.18319 * 11 10 9 33 33 H 1.09000 * 110.92363 * 97.86700 * 11 10 9 34 34 H 1.09001 * 110.75725 * 86.68018 * 13 12 11 35 35 H 1.08997 * 110.92282 * 323.36757 * 13 12 11 36 36 H 1.09005 * 109.86930 * 261.07378 * 14 13 12 37 37 H 1.08994 * 109.98680 * 140.01598 * 14 13 12 38 38 H 1.07997 * 120.47548 * 0.02652 * 19 18 16 39 39 H 1.07996 * 120.76084 * 179.97438 * 20 19 18 40 40 H 1.08992 * 115.54777 * 334.30197 * 22 21 20 41 41 H 1.09002 * 117.50062 * 359.97438 * 23 22 21 42 42 H 1.08995 * 117.50061 * 145.02007 * 23 22 21 43 43 H 1.09002 * 117.49454 * 214.97606 * 24 22 21 44 44 H 1.08996 * 117.50337 * 359.97438 * 24 22 21 45 45 H 1.08000 * 119.55393 * 180.02562 * 25 21 20 46 46 H 1.09008 * 110.40187 * 96.34879 * 27 15 14 47 47 H 1.08994 * 110.40379 * 218.76316 * 27 15 14 48 48 H 1.08997 * 110.40521 * 83.33468 * 28 9 7 49 49 H 1.09007 * 110.40231 * 320.91495 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1391 -2.5315 0.0007 11 6 -0.4542 -4.0454 -0.0215 12 6 0.8474 -4.6533 -0.5567 13 6 0.8691 -4.7208 -2.0881 14 6 1.8582 -5.8773 -2.3640 15 7 1.9367 -6.6892 -1.1390 16 6 2.7075 -7.7819 -0.9702 17 8 2.6929 -8.3780 0.0886 18 6 3.5727 -8.2561 -2.0756 19 6 4.3675 -9.3858 -1.8946 20 6 5.1720 -9.8170 -2.9374 21 6 5.1540 -9.1027 -4.1253 22 6 6.0120 -9.5352 -5.2864 23 6 6.0983 -8.5946 -6.4900 24 6 5.3026 -9.8974 -6.5927 25 6 4.3387 -7.9878 -4.2352 26 7 3.5841 -7.6011 -3.2298 27 6 1.0268 -6.1137 -0.1267 28 6 1.9362 -3.7338 0.0016 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5583 -2.0528 -0.8843 31 1 -0.5576 -2.0791 0.8998 32 1 -1.2850 -4.2574 -0.6946 33 1 -0.6684 -4.4132 0.9820 34 1 1.2393 -3.7867 -2.5107 35 1 -0.1198 -4.9560 -2.4814 36 1 2.8418 -5.4741 -2.6048 37 1 1.4958 -6.4882 -3.1908 38 1 4.3570 -9.9181 -0.9549 39 1 5.7993 -10.6891 -2.8269 40 1 6.9056 -10.1019 -5.0250 41 1 5.5341 -7.6631 -6.4423 42 1 7.0488 -8.5422 -7.0207 43 1 5.7298 -10.7022 -7.1910 44 1 4.2153 -9.8233 -6.6123 45 1 4.3218 -7.4292 -5.1594 46 1 0.0698 -6.6355 -0.1355 47 1 1.4792 -6.1647 0.8636 48 1 2.2004 -4.0305 1.0166 49 1 2.8159 -3.7525 -0.6418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041810686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:39 Heat of formation + Delta-G solvation = 49.045819 kcal Electronic energy + Delta-G solvation = -29560.458616 eV Core-core repulsion = 25681.506152 eV Total energy + Delta-G solvation = -3878.952464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.98352 -41.04451 -39.64342 -37.93281 -37.22503 -34.58878 -33.55485 -32.38446 -31.71789 -30.83271 -29.82156 -27.64847 -26.43372 -25.01923 -24.83423 -23.81842 -23.12202 -22.13050 -21.81728 -21.02052 -20.28735 -18.92116 -18.37386 -18.08743 -17.03450 -16.85780 -16.73434 -16.53320 -16.00272 -15.83245 -15.67721 -15.54836 -15.44377 -14.71335 -14.53384 -14.31843 -14.05940 -13.86863 -13.84617 -13.84188 -13.47742 -13.03312 -12.92578 -12.75448 -12.73287 -12.62285 -12.38724 -12.32089 -12.01471 -11.98808 -11.80029 -11.59789 -11.43359 -11.42975 -11.27652 -11.23458 -10.80034 -10.69305 -10.41845 -9.92072 -9.62151 -8.88763 -7.84375 -5.19372 -0.45440 0.21338 1.45360 1.46249 1.56538 1.59690 1.83512 2.49052 2.67456 2.97077 3.10657 3.31678 3.43429 3.53828 3.56785 3.63472 3.75436 3.87123 3.88565 3.91153 4.01668 4.14025 4.23523 4.28969 4.33028 4.33849 4.36689 4.58660 4.68851 4.69685 4.71766 4.82299 4.85304 4.87568 4.92894 5.03138 5.05579 5.07403 5.09303 5.10869 5.22141 5.28196 5.28906 5.31663 5.38629 5.45273 5.56736 5.70424 5.80420 6.20478 6.38049 6.64761 7.00975 7.11754 7.77463 8.42569 9.25915 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002567 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.894963 B =10905.656038 C =12013.220356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.623 5.623 10 C 0.188 3.812 11 C -0.115 4.115 12 C -0.073 4.073 13 C -0.109 4.109 14 C 0.134 3.866 15 N -0.597 5.597 16 C 0.575 3.425 17 O -0.575 6.575 18 C 0.049 3.951 19 C -0.111 4.111 20 C -0.074 4.074 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.173 4.173 24 C -0.160 4.160 25 C 0.085 3.915 26 N -0.461 5.461 27 C 0.128 3.872 28 C 0.153 3.847 29 H 0.247 0.753 30 H 0.017 0.983 31 H 0.004 0.996 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.174 0.826 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.180 0.820 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.011 0.989 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 -23.492 -14.637 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.349 5.349 10 C 0.063 3.937 11 C -0.153 4.153 12 C -0.074 4.074 13 C -0.147 4.147 14 C 0.012 3.988 15 N -0.328 5.328 16 C 0.364 3.636 17 O -0.455 6.455 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.074 4.074 22 C -0.147 4.147 23 C -0.210 4.210 24 C -0.197 4.197 25 C -0.075 4.075 26 N -0.172 5.172 27 C 0.005 3.995 28 C 0.028 3.972 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.165 0.835 39 H 0.191 0.809 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.111 0.889 45 H 0.197 0.803 46 H 0.110 0.890 47 H 0.085 0.915 48 H 0.029 0.971 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.021 -22.898 -14.121 28.374 hybrid contribution 0.734 0.755 0.633 1.228 sum 9.755 -22.143 -13.489 27.702 Atomic orbital electron populations 1.70188 1.06125 1.25151 1.58322 1.25601 0.96638 1.00786 1.02674 0.85039 0.78069 0.79606 0.76792 1.19327 1.21583 1.22005 1.19420 0.90774 0.83819 1.42886 0.90612 1.44864 1.02515 1.00626 1.86929 1.20964 0.83324 0.91545 0.97818 1.22517 0.96112 0.95133 1.01537 1.21457 0.96499 0.92800 0.96658 1.22424 1.00565 0.98080 0.93644 1.22126 0.99694 0.91129 0.85840 1.48537 1.41138 1.26499 1.16639 1.17959 0.79407 0.79585 0.86657 1.90737 1.68503 1.57900 1.28384 1.20862 0.99263 0.95895 0.92737 1.22205 0.94565 0.95183 1.01225 1.21743 0.97253 0.99998 0.90933 1.20659 0.96236 0.94889 0.95637 1.21073 1.00866 1.05964 0.86824 1.23208 1.03400 0.94740 0.99649 1.23125 0.99566 0.99684 0.97335 1.23152 0.92031 0.94860 0.97449 1.67790 1.20074 1.29583 0.99717 1.22044 0.93900 0.91600 0.91910 1.21292 0.94676 0.84806 0.96446 0.94375 0.96449 0.97758 0.88903 0.90887 0.91264 0.88706 0.91481 0.89427 0.83458 0.80885 0.84857 0.88150 0.86827 0.86687 0.88896 0.80340 0.89036 0.91452 0.97094 0.94863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.46 10.30 21.65 0.22 -57.24 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -13.78 10.28 84.03 0.86 -12.91 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -32.67 3.41 -693.64 -2.37 -35.04 16 10 C 0.19 9.30 5.37 86.82 0.47 9.77 16 11 C -0.11 -4.09 5.98 31.26 0.19 -3.90 16 12 C -0.07 -2.48 0.62 -51.86 -0.03 -2.51 16 13 C -0.11 -3.28 5.90 31.26 0.18 -3.10 16 14 C 0.13 3.70 5.40 86.82 0.47 4.17 16 15 N -0.60 -18.33 3.34 -816.03 -2.73 -21.06 16 16 C 0.58 18.50 7.84 86.88 0.68 19.18 16 17 O -0.57 -21.37 16.61 -3.76 -0.06 -21.43 16 18 C 0.05 1.30 6.72 41.91 0.28 1.58 16 19 C -0.11 -2.34 9.63 22.61 0.22 -2.12 16 20 C -0.07 -1.06 9.88 22.45 0.22 -0.84 16 21 C -0.07 -1.00 5.63 -19.69 -0.11 -1.11 16 22 C -0.13 -1.08 6.06 -11.54 -0.07 -1.15 16 23 C -0.17 -1.22 9.87 30.60 0.30 -0.92 16 24 C -0.16 -1.09 10.17 30.60 0.31 -0.78 16 25 C 0.09 1.48 10.47 84.82 0.89 2.37 16 26 N -0.46 -10.92 6.84 -184.91 -1.26 -12.18 16 27 C 0.13 3.94 5.94 86.23 0.51 4.45 16 28 C 0.15 6.60 6.21 86.15 0.53 7.14 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.02 0.94 7.39 -2.39 -0.02 0.93 16 31 H 0.00 0.23 7.49 -2.38 -0.02 0.22 16 32 H 0.09 2.81 7.79 -2.38 -0.02 2.79 16 33 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 34 H 0.07 2.42 8.00 -2.39 -0.02 2.40 16 35 H 0.09 2.43 7.83 -2.39 -0.02 2.41 16 36 H 0.07 1.97 7.42 -2.38 -0.02 1.95 16 37 H 0.09 2.15 7.52 -2.39 -0.02 2.13 16 38 H 0.15 3.04 7.64 -2.91 -0.02 3.02 16 39 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.74 6.20 -2.39 -0.01 0.73 16 42 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.18 2.26 6.03 -2.91 -0.02 2.25 16 46 H 0.09 2.47 8.08 -2.38 -0.02 2.45 16 47 H 0.07 2.26 7.76 -2.39 -0.02 2.24 16 48 H 0.01 0.50 7.86 -2.39 -0.02 0.48 16 49 H 0.03 1.45 8.01 -2.38 -0.02 1.43 16 Total: -1.00 -73.55 388.66 3.15 -70.40 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.95 Total: 11.90 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.37 Total: 16.09 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -6.13 Total: -125.52 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.55 3.15 -70.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041810686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.445 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds