Wall clock time and date at job start Wed Apr 1 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00286 * 2 1 4 4 H 1.48504 * 109.46797 * 274.99793 * 3 2 1 5 5 H 1.48493 * 109.46747 * 34.99680 * 3 2 1 6 6 H 1.48501 * 109.47248 * 155.00106 * 3 2 1 7 7 C 1.38815 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00741 * 185.03280 * 7 2 1 9 9 N 1.36943 * 119.99617 * 5.02640 * 7 2 1 10 10 C 1.48157 * 126.39934 * 354.90653 * 9 7 2 11 11 C 1.55295 * 107.04383 * 185.02315 * 10 9 7 12 12 C 1.53702 * 101.81925 * 22.43733 * 11 10 9 13 13 H 1.09000 * 111.10963 * 78.60705 * 12 11 10 14 14 C 1.51978 * 115.00003 * 206.55528 * 12 11 10 15 15 C 1.53498 * 107.36979 * 175.28508 * 14 12 11 16 16 N 1.46600 * 110.93565 * 308.44759 * 15 14 12 17 17 C 1.34781 * 119.75165 * 227.68142 * 16 15 14 18 18 O 1.21551 * 119.99438 * 184.02913 * 17 16 15 19 19 C 1.47834 * 119.99959 * 4.02422 * 17 16 15 20 20 C 1.40021 * 120.56519 * 304.99509 * 19 17 16 21 21 C 1.38358 * 118.28811 * 180.28460 * 20 19 17 22 22 C 1.38343 * 119.30710 * 359.73287 * 21 20 19 23 23 N 1.31926 * 121.07916 * 359.97438 * 22 21 20 24 24 C 1.31698 * 121.88189 * 0.02722 * 23 22 21 25 25 C 1.50699 * 119.72079 * 179.97438 * 24 23 22 26 26 C 1.53004 * 117.51628 * 346.32072 * 25 24 23 27 27 C 1.52998 * 117.49867 * 54.94978 * 25 24 23 28 28 C 1.47793 * 120.48829 * 47.40401 * 16 15 14 29 29 C 1.45502 * 126.39673 * 174.92676 * 9 7 2 30 30 H 1.09007 * 109.56495 * 265.82256 * 29 9 7 31 31 H 0.97004 * 119.99797 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.91368 * 304.36659 * 10 9 7 33 33 H 1.08994 * 109.92258 * 65.46559 * 10 9 7 34 34 H 1.08998 * 110.96240 * 140.56780 * 11 10 9 35 35 H 1.09003 * 110.95954 * 264.27530 * 11 10 9 36 36 H 1.08996 * 109.89313 * 294.86917 * 14 12 11 37 37 H 1.08997 * 109.89112 * 55.90546 * 14 12 11 38 38 H 1.08999 * 109.18738 * 188.01321 * 15 14 12 39 39 H 1.09001 * 109.05377 * 68.78423 * 15 14 12 40 40 H 1.08002 * 120.85449 * 359.97438 * 20 19 17 41 41 H 1.08001 * 120.34502 * 179.70943 * 21 20 19 42 42 H 1.08002 * 119.46514 * 179.97438 * 22 21 20 43 43 H 1.08998 * 115.54837 * 200.62231 * 25 24 23 44 44 H 1.08992 * 117.49838 * 214.96942 * 26 25 24 45 45 H 1.09002 * 117.49896 * 359.97438 * 26 25 24 46 46 H 1.09004 * 117.49778 * 359.97365 * 27 25 24 47 47 H 1.08993 * 117.50137 * 144.99708 * 27 25 24 48 48 H 1.09002 * 110.06954 * 68.21737 * 28 16 15 49 49 H 1.08999 * 110.06597 * 189.77919 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5967 1.4119 0.5917 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0815 9 7 1.3294 -2.3858 -0.1050 10 6 -0.1423 -2.5552 -0.1183 11 6 -0.4247 -4.0823 -0.1233 12 6 0.8803 -4.6456 0.4617 13 1 0.9043 -4.5354 1.5458 14 6 1.2140 -6.0661 0.0368 15 6 2.5938 -6.4059 0.6174 16 7 3.5748 -5.3713 0.2762 17 6 4.7784 -5.7270 -0.2151 18 8 5.6217 -4.8784 -0.4306 19 6 5.0730 -7.1490 -0.4919 20 6 4.9250 -8.1150 0.5109 21 6 5.2195 -9.4311 0.2020 22 6 5.6412 -9.7486 -1.0768 23 7 5.7659 -8.8179 -2.0034 24 6 5.4979 -7.5519 -1.7584 25 6 5.6578 -6.5289 -2.8532 26 6 6.4264 -6.9500 -4.1074 27 6 4.9076 -6.7738 -4.1640 28 6 3.2515 -3.9411 0.4613 29 6 1.9164 -3.7119 -0.2232 30 1 1.9943 -3.9841 -1.2758 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5765 -2.1002 0.7719 33 1 -0.5612 -2.0941 -1.0127 34 1 -1.2743 -4.3238 0.5153 35 1 -0.5864 -4.4456 -1.1381 36 1 0.4657 -6.7556 0.4276 37 1 1.2451 -6.1303 -1.0508 38 1 2.9262 -7.3626 0.2147 39 1 2.5147 -6.4817 1.7019 40 1 4.5944 -7.8391 1.5014 41 1 5.1214 -10.2025 0.9515 42 1 5.8721 -10.7751 -1.3205 43 1 5.7651 -5.4966 -2.5200 44 1 7.0392 -6.1948 -4.5993 45 1 6.8169 -7.9671 -4.1406 46 1 4.2987 -7.6751 -4.2345 47 1 4.5213 -5.9027 -4.6931 48 1 3.1717 -3.7101 1.5236 49 1 4.0199 -3.3212 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042132073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:06 Heat of formation + Delta-G solvation = 65.312770 kcal Electronic energy + Delta-G solvation = -30717.873101 eV Core-core repulsion = 26839.626025 eV Total energy + Delta-G solvation = -3878.247076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.14432 -39.68931 -38.12957 -36.99573 -35.44849 -33.08325 -32.74867 -31.50912 -31.22047 -29.33478 -28.49437 -25.26291 -24.87062 -24.55024 -23.21338 -22.37265 -22.29819 -20.94724 -20.26945 -19.92139 -19.24345 -17.39815 -17.26826 -16.57982 -16.38413 -15.98834 -15.33715 -15.02450 -14.70073 -14.49059 -14.42033 -14.09102 -14.00543 -13.77493 -13.52411 -13.33053 -13.03114 -12.80421 -12.66634 -12.28947 -11.92844 -11.78832 -11.58782 -11.53021 -11.35938 -11.01420 -10.92298 -10.83813 -10.76287 -10.54123 -10.20801 -10.13916 -10.02549 -9.98599 -9.80364 -9.69018 -9.54105 -9.46858 -8.99016 -8.63437 -8.48997 -6.86401 -5.73934 -3.07194 0.59276 0.90868 2.64740 3.01246 3.36141 3.41451 3.47586 3.48914 3.89425 4.02393 4.26392 4.42530 4.49753 4.51717 4.77205 4.84702 4.91483 4.95391 5.01353 5.04457 5.06760 5.20149 5.36798 5.40581 5.45250 5.57221 5.61861 5.65290 5.72473 5.75034 5.78933 5.83679 5.87260 5.98361 6.03912 6.09311 6.10490 6.14242 6.17038 6.32225 6.35603 6.44911 6.53389 6.66359 6.71663 7.02494 7.44657 7.55573 7.57656 7.68433 7.79975 8.18142 8.22439 9.17569 9.80687 10.47400 11.38796 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003360 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.693825 B = 8330.550349 C = 9127.850075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.103 3.897 16 N -0.596 5.596 17 C 0.563 3.437 18 O -0.529 6.529 19 C -0.166 4.166 20 C -0.044 4.044 21 C -0.185 4.185 22 C 0.118 3.882 23 N -0.485 5.485 24 C 0.211 3.789 25 C -0.133 4.133 26 C -0.153 4.153 27 C -0.156 4.156 28 C 0.117 3.883 29 C 0.157 3.843 30 H 0.024 0.976 31 H 0.252 0.748 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 -21.728 -0.551 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.157 4.157 15 C -0.020 4.020 16 N -0.328 5.328 17 C 0.349 3.651 18 O -0.406 6.406 19 C -0.171 4.171 20 C -0.070 4.070 21 C -0.205 4.205 22 C -0.039 4.039 23 N -0.193 5.193 24 C 0.073 3.927 25 C -0.152 4.152 26 C -0.191 4.191 27 C -0.194 4.194 28 C -0.005 4.005 29 C 0.048 3.952 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.154 0.846 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.091 0.909 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.696 -21.230 -1.463 22.309 hybrid contribution -0.001 1.021 1.062 1.473 sum 6.695 -20.209 -0.401 21.293 Atomic orbital electron populations 1.69952 1.04926 1.25098 1.56720 1.24788 0.95664 0.97649 1.02002 0.86142 0.78786 0.83588 0.77570 1.21577 1.21771 1.20492 1.19051 0.90780 0.82325 1.43658 0.90244 1.44170 1.01610 0.99750 1.86119 1.21536 0.83703 0.88286 1.01141 1.22722 0.95935 0.99495 0.99444 1.22287 0.97510 0.93387 1.00182 0.90440 1.21722 0.95122 0.97642 1.01253 1.21829 0.89541 0.90676 0.99950 1.48227 1.13608 1.08129 1.62848 1.18086 0.82388 0.87406 0.77203 1.90786 1.46019 1.51387 1.52450 1.20721 1.05470 0.94943 0.95996 1.21747 0.94072 0.92290 0.98929 1.22050 1.02816 0.96902 0.98743 1.22892 0.93258 0.98792 0.88999 1.67431 1.15693 1.00749 1.35444 1.20358 0.90396 0.90608 0.91334 1.21281 1.08092 0.98502 0.87314 1.22921 0.94241 1.03258 0.98635 1.22951 0.95167 1.03453 0.97816 1.21779 0.99172 0.78313 1.01214 1.20969 0.90866 0.87403 0.95964 0.95835 0.93750 0.93022 0.94102 0.92227 0.92536 0.90803 0.91392 0.90237 0.91536 0.84128 0.84145 0.82329 0.84621 0.88498 0.87626 0.88634 0.88097 0.90948 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.46 55.49 0.58 -26.16 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.32 9.89 -15.06 -0.15 -6.47 16 8 H 0.08 2.14 7.37 -52.49 -0.39 1.75 16 9 N -0.59 -14.71 3.35 -162.91 -0.55 -15.25 16 10 C 0.18 4.20 5.44 -1.91 -0.01 4.19 16 11 C -0.14 -2.45 6.54 -25.15 -0.16 -2.62 16 12 C -0.11 -1.88 2.62 -89.51 -0.23 -2.11 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 14 C -0.12 -1.50 5.70 -26.99 -0.15 -1.66 16 15 C 0.10 1.22 5.34 -3.73 -0.02 1.20 16 16 N -0.60 -9.12 3.02 -174.10 -0.52 -9.65 16 17 C 0.56 9.05 6.52 -12.33 -0.08 8.97 16 18 O -0.53 -10.36 14.71 5.32 0.08 -10.28 16 19 C -0.17 -2.19 4.76 -104.82 -0.50 -2.69 16 20 C -0.04 -0.43 7.64 -38.87 -0.30 -0.73 16 21 C -0.19 -1.44 10.10 -39.50 -0.40 -1.84 16 22 C 0.12 1.04 11.17 -17.47 -0.20 0.84 16 23 N -0.48 -5.73 9.37 -9.14 -0.09 -5.82 16 24 C 0.21 2.82 6.47 -82.17 -0.53 2.29 16 25 C -0.13 -1.82 5.57 -91.77 -0.51 -2.33 16 26 C -0.15 -1.73 10.02 -26.73 -0.27 -2.00 16 27 C -0.16 -1.82 10.22 -26.73 -0.27 -2.09 16 28 C 0.12 2.19 5.65 -3.95 -0.02 2.16 16 29 C 0.16 3.17 2.77 -67.82 -0.19 2.98 16 30 H 0.02 0.52 7.90 -51.92 -0.41 0.11 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 33 H 0.04 1.07 7.65 -51.93 -0.40 0.67 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 38 H 0.08 0.81 4.91 -51.93 -0.26 0.56 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.14 1.13 7.49 -52.49 -0.39 0.74 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.14 2.17 6.02 -51.93 -0.31 1.85 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.11 1.17 7.62 -51.93 -0.40 0.77 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 49 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -32.33 382.47 -11.33 -43.66 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.48 Total: 2.66 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.09 Total: -2.13 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.58 Total: -56.88 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.33 -11.33 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042132073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.974 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds