Wall clock time and date at job start Wed Apr 1 2020 00:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48502 * 109.46742 * 274.83189 * 3 2 1 5 5 H 1.48502 * 109.46935 * 34.82642 * 3 2 1 6 6 H 1.48501 * 109.47505 * 154.83060 * 3 2 1 7 7 C 1.38814 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00378 * 214.74529 * 7 2 1 9 9 N 1.36937 * 119.99823 * 34.74163 * 7 2 1 10 10 C 1.48165 * 126.39619 * 8.70823 * 9 7 2 11 11 C 1.55306 * 107.04032 * 175.03283 * 10 9 7 12 12 C 1.53703 * 101.81268 * 337.55286 * 11 10 9 13 13 H 1.08996 * 111.69289 * 281.16739 * 12 11 10 14 14 C 1.51972 * 115.00533 * 153.47296 * 12 11 10 15 15 C 1.53889 * 107.29045 * 184.54834 * 14 12 11 16 16 N 1.46601 * 110.67300 * 51.83368 * 15 14 12 17 17 C 1.34775 * 119.75147 * 132.20720 * 16 15 14 18 18 O 1.21276 * 120.00025 * 175.23212 * 17 16 15 19 19 C 1.50697 * 120.00266 * 355.22695 * 17 16 15 20 20 C 1.50700 * 115.55233 * 294.69483 * 19 17 16 21 21 C 1.38679 * 120.41595 * 307.63138 * 20 19 17 22 22 C 1.38629 * 118.41810 * 179.78247 * 21 20 19 23 23 C 1.38226 * 119.16347 * 0.51722 * 22 21 20 24 24 N 1.31851 * 120.76098 * 359.72077 * 23 22 21 25 25 C 1.31890 * 121.72879 * 0.02562 * 24 23 22 26 26 C 1.52996 * 117.50314 * 149.01605 * 19 17 16 27 27 C 1.53006 * 117.49630 * 80.35789 * 19 17 16 28 28 C 1.47775 * 120.50777 * 312.18421 * 16 15 14 29 29 C 1.45503 * 126.39968 * 188.74648 * 9 7 2 30 30 H 1.09008 * 108.99292 * 93.60567 * 29 9 7 31 31 H 0.96993 * 120.00029 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.91766 * 294.37909 * 10 9 7 33 33 H 1.09001 * 109.91955 * 55.68311 * 10 9 7 34 34 H 1.09001 * 110.95909 * 219.42472 * 11 10 9 35 35 H 1.08993 * 110.95878 * 95.68597 * 11 10 9 36 36 H 1.08998 * 109.89278 * 65.10541 * 14 12 11 37 37 H 1.08994 * 109.89647 * 303.99218 * 14 12 11 38 38 H 1.08999 * 109.23315 * 172.13564 * 15 14 12 39 39 H 1.09005 * 109.23190 * 291.54596 * 15 14 12 40 40 H 1.07998 * 120.79051 * 0.02562 * 21 20 19 41 41 H 1.08005 * 120.41696 * 180.26553 * 22 21 20 42 42 H 1.07993 * 119.61748 * 179.74440 * 23 22 21 43 43 H 1.07995 * 119.61688 * 180.02562 * 25 24 23 44 44 H 1.09007 * 117.49741 * 0.02562 * 26 19 17 45 45 H 1.09002 * 117.50320 * 145.01829 * 26 19 17 46 46 H 1.08998 * 117.49647 * 214.97884 * 27 19 17 47 47 H 1.08999 * 117.49882 * 359.97438 * 27 19 17 48 48 H 1.08999 * 110.09477 * 292.10832 * 28 16 15 49 49 H 1.08999 * 110.15449 * 170.57159 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3955 2.1053 -1.3951 5 1 1.5023 2.6211 0.7996 6 1 3.5951 1.4130 0.5954 7 6 2.0103 -1.2021 0.0005 8 1 2.9459 -1.2852 0.5336 9 7 1.5088 -2.2826 -0.6748 10 6 0.3459 -2.2832 -1.5930 11 6 0.2496 -3.7075 -2.2045 12 6 1.6864 -4.2238 -2.0274 13 1 2.3553 -3.8228 -2.7888 14 6 1.8184 -5.7345 -1.9270 15 6 3.2978 -6.0463 -1.6400 16 7 3.7776 -5.2687 -0.4936 17 6 4.4687 -5.8814 0.4880 18 8 4.9421 -5.2294 1.3943 19 6 4.6532 -7.3768 0.4593 20 6 3.3935 -8.1902 0.6094 21 6 2.5303 -7.9583 1.6697 22 6 1.3810 -8.7276 1.7652 23 6 1.1408 -9.7007 0.8133 24 7 1.9867 -9.8968 -0.1790 25 6 3.0871 -9.1806 -0.3041 26 6 5.9363 -7.9423 1.0714 27 6 5.7511 -7.9359 -0.4480 28 6 3.5098 -3.8181 -0.4060 29 6 2.0178 -3.6448 -0.6242 30 1 1.4705 -4.1999 0.1378 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5645 -2.0544 -1.0392 33 1 0.4971 -1.5487 -2.3841 34 1 -0.0210 -3.6614 -3.2594 35 1 -0.4574 -4.3234 -1.6487 36 1 1.5177 -6.1964 -2.8674 37 1 1.1962 -6.1079 -1.1137 38 1 3.4052 -7.1091 -1.4233 39 1 3.8941 -5.7969 -2.5177 40 1 2.7462 -7.1939 2.4014 41 1 0.6841 -8.5714 2.5754 42 1 0.2499 -10.3070 0.8829 43 1 3.7560 -9.3698 -1.1306 44 1 6.6470 -7.2326 1.4953 45 1 5.8695 -8.9027 1.5826 46 1 5.5623 -8.8921 -0.9359 47 1 6.3396 -7.2221 -1.0245 48 1 4.0649 -3.2875 -1.1796 49 1 3.7898 -3.4432 0.5784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042195813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:19 Heat of formation + Delta-G solvation = 66.535941 kcal Electronic energy + Delta-G solvation = -31143.484605 eV Core-core repulsion = 27265.290570 eV Total energy + Delta-G solvation = -3878.194035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.17514 -39.83312 -38.58271 -36.68321 -35.41802 -32.92069 -32.59625 -31.36727 -31.10083 -29.60411 -28.59372 -25.61189 -24.65582 -24.00732 -23.85111 -22.46618 -22.21919 -21.92139 -20.23560 -19.61216 -18.76550 -17.68460 -17.01438 -16.54513 -16.26750 -15.95363 -15.55307 -14.89454 -14.81739 -14.62830 -14.41572 -14.18482 -13.94849 -13.80938 -13.41725 -13.21391 -13.15181 -12.91106 -12.60145 -12.35522 -12.23136 -12.04940 -11.73954 -11.56238 -11.45292 -11.19538 -10.94333 -10.88890 -10.80637 -10.73094 -10.14890 -10.14332 -10.08548 -9.97197 -9.86238 -9.72316 -9.56416 -9.46838 -9.04647 -8.49579 -8.42323 -6.91254 -5.85581 -3.04229 0.82683 1.06822 2.56331 3.00284 3.35307 3.42312 3.51223 3.52591 3.66400 4.07198 4.31299 4.35394 4.51662 4.53989 4.61049 4.77762 4.77893 4.90571 4.94498 5.00754 5.10570 5.20823 5.24484 5.28473 5.41900 5.50120 5.53347 5.54038 5.61329 5.62299 5.73119 5.83234 5.86530 5.93922 5.98259 6.02458 6.03855 6.08321 6.11872 6.31015 6.43066 6.44209 6.47099 6.65013 6.68935 7.01344 7.20348 7.49453 7.54375 7.72212 7.78383 8.14250 8.26616 9.05951 9.79016 10.47481 11.24944 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.003581 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.499049 B = 7817.912746 C = 8566.753092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.008 3.992 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.583 5.583 10 C 0.156 3.844 11 C -0.129 4.129 12 C -0.111 4.111 13 H 0.078 0.922 14 C -0.117 4.117 15 C 0.107 3.893 16 N -0.596 5.596 17 C 0.550 3.450 18 O -0.534 6.534 19 C -0.119 4.119 20 C -0.091 4.091 21 C -0.059 4.059 22 C -0.164 4.164 23 C 0.095 3.905 24 N -0.480 5.480 25 C 0.102 3.898 26 C -0.132 4.132 27 C -0.157 4.157 28 C 0.117 3.883 29 C 0.156 3.844 30 H 0.022 0.978 31 H 0.253 0.747 32 H 0.058 0.942 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -21.217 -3.132 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.192 4.192 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.167 4.167 12 C -0.131 4.131 13 H 0.096 0.904 14 C -0.156 4.156 15 C -0.016 4.016 16 N -0.328 5.328 17 C 0.336 3.664 18 O -0.411 6.411 19 C -0.123 4.123 20 C -0.094 4.094 21 C -0.085 4.085 22 C -0.184 4.184 23 C -0.062 4.062 24 N -0.188 5.188 25 C -0.055 4.055 26 C -0.169 4.169 27 C -0.194 4.194 28 C -0.005 4.005 29 C 0.047 3.953 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.871 -21.277 -3.199 22.303 hybrid contribution 0.347 1.715 0.601 1.850 sum 6.218 -19.562 -2.597 20.690 Atomic orbital electron populations 1.70254 1.05607 1.25797 1.51017 1.24583 0.94809 0.98013 1.01804 0.86538 0.80101 0.84565 0.77628 1.21618 1.22085 1.20295 1.18854 1.02785 0.87213 1.28686 0.90196 1.44220 1.33054 1.02961 1.50582 1.21565 0.91986 0.91371 0.91975 1.22559 0.95413 0.98781 0.99941 1.22247 0.98039 0.93579 0.99228 0.90384 1.21765 0.95236 0.96905 1.01695 1.21810 0.95514 0.95825 0.88482 1.48166 1.53638 1.09705 1.21305 1.19270 0.78308 0.87103 0.81682 1.90710 1.48941 1.66003 1.35439 1.19994 0.89929 0.92219 1.10132 1.19738 0.95367 0.97532 0.96715 1.21512 0.92885 0.97603 0.96483 1.22180 0.98060 0.97083 1.01072 1.22788 0.97854 0.95596 0.89922 1.67731 1.03145 1.25863 1.22035 1.22617 0.94049 0.91418 0.97442 1.23074 0.95955 1.02488 0.95399 1.23195 0.99330 1.02866 0.94054 1.21703 0.97518 0.77536 1.03706 1.20950 0.92008 0.88407 0.93941 0.96049 0.93703 0.92445 0.95571 0.92126 0.92184 0.90917 0.91726 0.89967 0.91706 0.84716 0.84483 0.82643 0.82719 0.87215 0.87829 0.87423 0.87627 0.91080 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 11.81 55.49 0.66 -25.29 16 2 C 0.01 0.22 5.11 -17.43 -0.09 0.13 16 3 Si 0.88 21.92 29.67 -169.99 -5.04 16.88 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.88 9.68 -15.06 -0.15 -7.03 16 8 H 0.08 2.20 7.55 -52.49 -0.40 1.81 16 9 N -0.58 -14.54 3.34 -162.89 -0.54 -15.09 16 10 C 0.16 3.63 5.97 -1.90 -0.01 3.62 16 11 C -0.13 -2.29 6.54 -25.14 -0.16 -2.45 16 12 C -0.11 -1.85 2.62 -89.52 -0.23 -2.08 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.55 5.72 -26.79 -0.15 -1.70 16 15 C 0.11 1.30 6.04 -3.52 -0.02 1.28 16 16 N -0.60 -9.13 3.01 -172.75 -0.52 -9.65 16 17 C 0.55 8.51 6.64 -10.99 -0.07 8.43 16 18 O -0.53 -10.33 16.09 5.56 0.09 -10.24 16 19 C -0.12 -1.33 1.10 -156.81 -0.17 -1.50 16 20 C -0.09 -0.99 4.23 -104.48 -0.44 -1.43 16 21 C -0.06 -0.68 9.58 -39.27 -0.38 -1.05 16 22 C -0.16 -1.61 10.11 -39.44 -0.40 -2.01 16 23 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 24 N -0.48 -5.19 10.36 -13.26 -0.14 -5.33 16 25 C 0.10 1.00 9.16 -17.55 -0.16 0.84 16 26 C -0.13 -1.25 9.76 -26.70 -0.26 -1.51 16 27 C -0.16 -1.28 9.10 -26.69 -0.24 -1.52 16 28 C 0.12 2.22 5.62 -3.96 -0.02 2.20 16 29 C 0.16 3.19 2.75 -67.82 -0.19 3.00 16 30 H 0.02 0.49 7.94 -51.92 -0.41 0.08 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.06 1.51 7.15 -51.93 -0.37 1.14 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 38 H 0.08 0.86 3.74 -51.93 -0.19 0.67 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.16 1.17 6.34 -52.49 -0.33 0.83 16 44 H 0.11 1.15 7.99 -51.93 -0.42 0.74 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.11 0.63 6.50 -51.93 -0.34 0.29 16 47 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 49 H 0.09 2.00 6.82 -51.93 -0.35 1.64 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -32.88 384.27 -10.50 -43.38 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.44 Total: 1.62 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -3.35 Total: -2.08 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.55 Total: -55.36 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.04 Total: 16.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.88 -10.50 -43.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042195813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.914 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds