Wall clock time and date at job start Wed Apr 1 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00230 * 2 1 4 4 H 1.48506 * 109.47129 * 274.99189 * 3 2 1 5 5 H 1.48503 * 109.47134 * 34.98546 * 3 2 1 6 6 H 1.48497 * 109.47351 * 154.98828 * 3 2 1 7 7 C 1.38811 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00410 * 172.18849 * 7 2 1 9 9 N 1.36941 * 120.00241 * 352.18498 * 7 2 1 10 10 C 1.48154 * 126.39368 * 3.81929 * 9 7 2 11 11 C 1.55304 * 107.03977 * 184.98290 * 10 9 7 12 12 C 1.53697 * 101.81615 * 22.44714 * 11 10 9 13 13 H 1.08996 * 111.69763 * 78.83863 * 12 11 10 14 14 C 1.51949 * 114.99241 * 206.55658 * 12 11 10 15 15 C 1.53890 * 107.28871 * 175.46020 * 14 12 11 16 16 N 1.46594 * 110.70756 * 308.18649 * 15 14 12 17 17 C 1.34775 * 119.75133 * 227.73281 * 16 15 14 18 18 O 1.21516 * 119.99739 * 359.74465 * 17 16 15 19 19 C 1.48165 * 120.00583 * 179.74235 * 17 16 15 20 20 C 1.39308 * 119.72834 * 201.76568 * 19 17 16 21 21 C 1.38588 * 119.05974 * 179.76990 * 20 19 17 22 22 C 1.38625 * 118.48700 * 0.49756 * 21 20 19 23 23 C 1.50701 * 120.32389 * 179.72419 * 22 21 20 24 24 C 1.52992 * 117.50067 * 188.64138 * 23 22 21 25 25 C 1.52996 * 60.00183 * 252.50941 * 24 23 22 26 26 C 1.38555 * 119.35285 * 359.74543 * 22 21 20 27 27 N 1.31519 * 120.90299 * 0.02562 * 26 22 21 28 28 C 1.47789 * 120.50156 * 47.71517 * 16 15 14 29 29 C 1.45507 * 126.40019 * 183.79699 * 9 7 2 30 30 H 1.09000 * 109.00232 * 266.39137 * 29 9 7 31 31 H 0.96997 * 119.99920 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.92008 * 65.63977 * 10 9 7 33 33 H 1.09002 * 110.09066 * 304.42567 * 10 9 7 34 34 H 1.08997 * 110.95649 * 264.31422 * 11 10 9 35 35 H 1.09000 * 110.95927 * 140.57914 * 11 10 9 36 36 H 1.09007 * 109.89943 * 56.01226 * 14 12 11 37 37 H 1.09001 * 109.94915 * 294.93570 * 14 12 11 38 38 H 1.09001 * 109.22975 * 187.87143 * 15 14 12 39 39 H 1.08998 * 109.19624 * 68.48432 * 15 14 12 40 40 H 1.07994 * 120.46770 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.75663 * 180.24368 * 21 20 19 42 42 H 1.09004 * 115.55082 * 334.35310 * 23 22 21 43 43 H 1.09003 * 117.50433 * 0.02562 * 24 23 22 44 44 H 1.09006 * 117.50053 * 145.02388 * 24 23 22 45 45 H 1.09000 * 117.50297 * 252.51019 * 25 24 23 46 46 H 1.09005 * 117.51731 * 107.48178 * 25 24 23 47 47 H 1.08006 * 119.54675 * 180.02562 * 26 22 21 48 48 H 1.09002 * 110.06711 * 189.54747 * 28 16 15 49 49 H 1.08997 * 110.06954 * 67.98694 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0827 -1.2065 -0.1277 9 7 1.3351 -2.3827 0.1602 10 6 -0.1334 -2.5482 0.2658 11 6 -0.4020 -4.0484 0.5643 12 6 0.9398 -4.4946 1.1666 13 1 1.0344 -4.1909 2.2092 14 6 1.2606 -5.9701 0.9970 15 6 2.6769 -6.1972 1.5546 16 7 3.6250 -5.2482 0.9636 17 6 4.8015 -5.6924 0.4788 18 8 5.0749 -6.8750 0.5369 19 6 5.7616 -4.7390 -0.1249 20 6 6.7318 -5.2031 -1.0103 21 6 7.6197 -4.2985 -1.5706 22 6 7.5129 -2.9622 -1.2178 23 6 8.4608 -1.9441 -1.7975 24 6 8.4201 -0.5295 -1.2162 25 6 7.8560 -0.7993 -2.6126 26 6 6.5264 -2.5718 -0.3267 27 7 5.6937 -3.4508 0.1868 28 6 3.3004 -3.8080 0.8948 29 6 1.9259 -3.7088 0.2587 30 1 1.9487 -4.1616 -0.7325 31 1 -0.4850 0.8400 0.0004 32 1 -0.6075 -2.2659 -0.6742 33 1 -0.5221 -1.9327 1.0771 34 1 -0.6188 -4.5956 -0.3530 35 1 -1.2108 -4.1637 1.2858 36 1 1.2307 -6.2373 -0.0594 37 1 0.5423 -6.5731 1.5524 38 1 2.9950 -7.2138 1.3232 39 1 2.6619 -6.0633 2.6362 40 1 6.7886 -6.2523 -1.2596 41 1 8.3802 -4.6278 -2.2632 42 1 9.4295 -2.3306 -2.1145 43 1 7.7079 -0.3351 -0.4142 44 1 9.3621 0.0151 -1.1505 45 1 8.4268 -0.4323 -3.4656 46 1 6.7724 -0.7826 -2.7299 47 1 6.4401 -1.5313 -0.0499 48 1 4.0353 -3.2879 0.2804 49 1 3.2802 -3.3809 1.8974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042334487.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:03 Heat of formation + Delta-G solvation = 77.567636 kcal Electronic energy + Delta-G solvation = -30749.577740 eV Core-core repulsion = 26871.862075 eV Total energy + Delta-G solvation = -3877.715665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.97482 -39.62297 -38.20336 -37.16762 -35.20009 -33.26588 -32.46241 -31.50967 -30.79799 -29.19352 -28.38319 -25.64764 -24.41568 -24.18552 -23.34175 -22.48298 -22.19861 -20.94819 -20.26664 -19.82350 -19.26457 -17.35136 -17.22022 -16.59617 -15.88060 -15.70162 -15.16382 -14.93456 -14.86774 -14.69137 -14.43621 -14.11837 -13.79354 -13.63705 -13.48063 -13.17758 -13.07500 -12.66212 -12.37006 -12.01725 -11.97412 -11.84844 -11.66636 -11.50166 -11.27267 -11.16485 -10.85727 -10.76930 -10.66461 -10.63527 -10.23714 -10.12300 -10.05906 -9.87380 -9.77031 -9.71157 -9.57291 -8.94941 -8.66215 -8.55398 -8.31912 -6.82865 -5.71893 -3.02812 0.61196 1.14554 2.75676 3.12666 3.38362 3.43551 3.46206 3.54857 3.90927 4.08045 4.34448 4.50070 4.59138 4.64392 4.71330 4.78111 4.84809 5.08106 5.12110 5.14125 5.25650 5.25852 5.43895 5.45643 5.61274 5.67064 5.68655 5.74088 5.77258 5.84442 5.86151 5.92503 5.93966 6.01178 6.08114 6.12313 6.21558 6.24199 6.28908 6.39939 6.53643 6.61548 6.70667 6.74540 7.03658 7.12110 7.53309 7.59972 7.63660 7.74980 7.82379 8.24059 8.30953 9.20140 9.83951 10.52631 11.41457 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.005496 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.836895 B = 5093.204574 C = 8366.222408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.118 4.118 15 C 0.110 3.890 16 N -0.582 5.582 17 C 0.569 3.431 18 O -0.550 6.550 19 C 0.076 3.924 20 C -0.110 4.110 21 C -0.079 4.079 22 C -0.083 4.083 23 C -0.121 4.121 24 C -0.174 4.174 25 C -0.166 4.166 26 C 0.095 3.905 27 N -0.432 5.432 28 C 0.085 3.915 29 C 0.153 3.847 30 H 0.019 0.981 31 H 0.251 0.749 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.163 0.837 48 H 0.138 0.862 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.338 -7.455 -1.853 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.012 4.012 16 N -0.313 5.313 17 C 0.355 3.645 18 O -0.429 6.429 19 C -0.061 4.061 20 C -0.131 4.131 21 C -0.105 4.105 22 C -0.085 4.085 23 C -0.140 4.140 24 C -0.211 4.211 25 C -0.203 4.203 26 C -0.064 4.064 27 N -0.143 5.143 28 C -0.037 4.037 29 C 0.044 3.956 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.180 0.820 48 H 0.155 0.845 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.735 -7.581 -1.219 14.871 hybrid contribution 0.898 0.794 -0.602 1.341 sum 13.633 -6.787 -1.821 15.337 Atomic orbital electron populations 1.69959 1.04908 1.24957 1.56872 1.24779 0.95606 0.97508 1.02421 0.86218 0.78894 0.84021 0.77409 1.21820 1.21709 1.20501 1.18997 0.91142 0.82436 1.42494 0.90328 1.44154 1.01791 1.00374 1.85338 1.21523 0.83887 0.88914 1.00375 1.22716 0.95816 0.99761 0.99301 1.22276 0.97308 0.93667 1.00084 0.90493 1.21795 0.95090 0.97276 1.01500 1.21627 0.88891 0.93583 0.97099 1.48180 1.16058 1.09878 1.57167 1.17931 0.81713 0.86750 0.78059 1.90729 1.77058 1.16241 1.58879 1.21169 0.96419 0.90934 0.97591 1.22007 0.93872 1.01526 0.95654 1.21354 0.98554 0.92036 0.98516 1.20337 0.96743 0.94365 0.97058 1.20962 0.99172 0.88640 1.05185 1.23107 1.03579 0.96903 0.97518 1.23095 1.01829 1.00403 0.94943 1.22912 0.90116 0.99923 0.93403 1.67863 1.21446 1.01554 1.23399 1.22899 0.99699 0.77841 1.03228 1.21057 0.91579 0.87928 0.95001 0.96364 0.93823 0.94471 0.92832 0.92617 0.92300 0.91587 0.90904 0.89452 0.91763 0.83653 0.84210 0.86593 0.87907 0.88128 0.88176 0.87983 0.81981 0.84524 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.49 55.49 0.58 -26.05 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.90 21.49 29.56 -169.99 -5.02 16.47 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.22 -5.98 9.84 -15.06 -0.15 -6.13 16 8 H 0.08 2.03 7.48 -52.49 -0.39 1.64 16 9 N -0.59 -14.77 3.35 -162.90 -0.55 -15.31 16 10 C 0.18 4.27 5.45 -1.91 -0.01 4.26 16 11 C -0.14 -2.58 6.54 -25.15 -0.16 -2.75 16 12 C -0.11 -2.03 2.62 -89.53 -0.23 -2.27 16 13 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 14 C -0.12 -1.74 5.72 -26.80 -0.15 -1.89 16 15 C 0.11 1.66 6.33 -3.53 -0.02 1.64 16 16 N -0.58 -10.05 3.01 -173.73 -0.52 -10.57 16 17 C 0.57 9.96 7.59 -12.18 -0.09 9.86 16 18 O -0.55 -10.31 15.87 5.35 0.08 -10.22 16 19 C 0.08 1.21 6.42 -83.01 -0.53 0.68 16 20 C -0.11 -1.43 9.63 -39.05 -0.38 -1.81 16 21 C -0.08 -0.85 9.88 -39.31 -0.39 -1.23 16 22 C -0.08 -0.94 5.63 -104.36 -0.59 -1.52 16 23 C -0.12 -1.07 6.06 -91.78 -0.56 -1.62 16 24 C -0.17 -1.49 9.86 -26.74 -0.26 -1.75 16 25 C -0.17 -1.48 10.17 -26.73 -0.27 -1.75 16 26 C 0.10 1.29 10.47 -17.57 -0.18 1.11 16 27 N -0.43 -6.94 6.32 -9.80 -0.06 -7.00 16 28 C 0.09 1.63 5.17 -3.95 -0.02 1.61 16 29 C 0.15 3.20 2.75 -67.82 -0.19 3.01 16 30 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 0.99 7.79 -51.93 -0.40 0.58 16 33 H 0.05 1.42 7.22 -51.93 -0.37 1.04 16 34 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.01 7.99 -51.93 -0.41 0.59 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.29 6.95 -51.93 -0.36 0.93 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.15 1.72 7.80 -52.49 -0.41 1.31 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 0.94 6.20 -51.93 -0.32 0.62 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.16 2.02 6.03 -52.48 -0.32 1.70 16 48 H 0.14 2.70 3.84 -78.03 -0.30 2.40 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -31.43 382.53 -11.50 -42.93 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.49 Total: 4.83 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -4.29 Total: -0.84 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.55 Total: -58.93 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.43 -11.50 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042334487.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.498 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds