Wall clock time and date at job start Wed Apr 1 2020 01:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00230 * 2 1 4 4 H 1.48506 * 109.47129 * 274.99189 * 3 2 1 5 5 H 1.48503 * 109.47134 * 34.98546 * 3 2 1 6 6 H 1.48497 * 109.47351 * 154.98828 * 3 2 1 7 7 C 1.38811 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00410 * 172.18849 * 7 2 1 9 9 N 1.36941 * 120.00241 * 352.18498 * 7 2 1 10 10 C 1.48154 * 126.39368 * 3.81929 * 9 7 2 11 11 C 1.55304 * 107.03977 * 184.98290 * 10 9 7 12 12 C 1.53697 * 101.81615 * 22.44714 * 11 10 9 13 13 H 1.08996 * 111.69763 * 78.83863 * 12 11 10 14 14 C 1.51949 * 114.99241 * 206.55658 * 12 11 10 15 15 C 1.53890 * 107.28871 * 175.46020 * 14 12 11 16 16 N 1.46594 * 110.70756 * 308.18649 * 15 14 12 17 17 C 1.34775 * 119.75133 * 227.73281 * 16 15 14 18 18 O 1.21516 * 119.99739 * 359.74465 * 17 16 15 19 19 C 1.48165 * 120.00583 * 179.74235 * 17 16 15 20 20 C 1.39308 * 119.72834 * 201.76568 * 19 17 16 21 21 C 1.38588 * 119.05974 * 179.76990 * 20 19 17 22 22 C 1.38625 * 118.48700 * 0.49756 * 21 20 19 23 23 C 1.50701 * 120.32389 * 179.72419 * 22 21 20 24 24 C 1.52992 * 117.50067 * 188.64138 * 23 22 21 25 25 C 1.52996 * 60.00183 * 252.50941 * 24 23 22 26 26 C 1.38555 * 119.35285 * 359.74543 * 22 21 20 27 27 N 1.31519 * 120.90299 * 0.02562 * 26 22 21 28 28 C 1.47789 * 120.50156 * 47.71517 * 16 15 14 29 29 C 1.45507 * 126.40019 * 183.79699 * 9 7 2 30 30 H 1.09000 * 109.00232 * 266.39137 * 29 9 7 31 31 H 0.96997 * 119.99920 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.92008 * 65.63977 * 10 9 7 33 33 H 1.09002 * 110.09066 * 304.42567 * 10 9 7 34 34 H 1.08997 * 110.95649 * 264.31422 * 11 10 9 35 35 H 1.09000 * 110.95927 * 140.57914 * 11 10 9 36 36 H 1.09007 * 109.89943 * 56.01226 * 14 12 11 37 37 H 1.09001 * 109.94915 * 294.93570 * 14 12 11 38 38 H 1.09001 * 109.22975 * 187.87143 * 15 14 12 39 39 H 1.08998 * 109.19624 * 68.48432 * 15 14 12 40 40 H 1.07994 * 120.46770 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.75663 * 180.24368 * 21 20 19 42 42 H 1.09004 * 115.55082 * 334.35310 * 23 22 21 43 43 H 1.09003 * 117.50433 * 0.02562 * 24 23 22 44 44 H 1.09006 * 117.50053 * 145.02388 * 24 23 22 45 45 H 1.09000 * 117.50297 * 252.51019 * 25 24 23 46 46 H 1.09005 * 117.51731 * 107.48178 * 25 24 23 47 47 H 1.08006 * 119.54675 * 180.02562 * 26 22 21 48 48 H 1.09002 * 110.06711 * 189.54747 * 28 16 15 49 49 H 1.08997 * 110.06954 * 67.98694 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0827 -1.2065 -0.1277 9 7 1.3351 -2.3827 0.1602 10 6 -0.1334 -2.5482 0.2658 11 6 -0.4020 -4.0484 0.5643 12 6 0.9398 -4.4946 1.1666 13 1 1.0344 -4.1909 2.2092 14 6 1.2606 -5.9701 0.9970 15 6 2.6769 -6.1972 1.5546 16 7 3.6250 -5.2482 0.9636 17 6 4.8015 -5.6924 0.4788 18 8 5.0749 -6.8750 0.5369 19 6 5.7616 -4.7390 -0.1249 20 6 6.7318 -5.2031 -1.0103 21 6 7.6197 -4.2985 -1.5706 22 6 7.5129 -2.9622 -1.2178 23 6 8.4608 -1.9441 -1.7975 24 6 8.4201 -0.5295 -1.2162 25 6 7.8560 -0.7993 -2.6126 26 6 6.5264 -2.5718 -0.3267 27 7 5.6937 -3.4508 0.1868 28 6 3.3004 -3.8080 0.8948 29 6 1.9259 -3.7088 0.2587 30 1 1.9487 -4.1616 -0.7325 31 1 -0.4850 0.8400 0.0004 32 1 -0.6075 -2.2659 -0.6742 33 1 -0.5221 -1.9327 1.0771 34 1 -0.6188 -4.5956 -0.3530 35 1 -1.2108 -4.1637 1.2858 36 1 1.2307 -6.2373 -0.0594 37 1 0.5423 -6.5731 1.5524 38 1 2.9950 -7.2138 1.3232 39 1 2.6619 -6.0633 2.6362 40 1 6.7886 -6.2523 -1.2596 41 1 8.3802 -4.6278 -2.2632 42 1 9.4295 -2.3306 -2.1145 43 1 7.7079 -0.3351 -0.4142 44 1 9.3621 0.0151 -1.1505 45 1 8.4268 -0.4323 -3.4656 46 1 6.7724 -0.7826 -2.7299 47 1 6.4401 -1.5313 -0.0499 48 1 4.0353 -3.2879 0.2804 49 1 3.2802 -3.3809 1.8974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042334487.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:02 Heat of formation + Delta-G solvation = 60.810846 kcal Electronic energy + Delta-G solvation = -30750.304369 eV Core-core repulsion = 26871.862075 eV Total energy + Delta-G solvation = -3878.442294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13349 -40.88651 -39.66485 -38.00367 -36.76989 -34.82327 -33.71168 -32.98745 -32.01911 -30.78277 -30.08796 -26.95492 -26.14680 -25.29810 -24.67985 -23.53045 -23.16724 -21.93550 -21.77473 -21.43762 -20.64214 -18.69202 -18.54232 -18.12924 -17.05474 -16.86104 -16.78467 -16.27173 -16.02572 -15.90746 -15.71822 -15.63401 -15.18770 -15.01612 -14.76661 -14.50731 -14.32241 -13.88022 -13.79376 -13.61967 -13.31408 -13.11375 -13.02065 -12.74987 -12.71940 -12.49731 -12.35764 -12.18040 -12.03006 -11.94743 -11.78440 -11.54380 -11.46909 -11.32852 -11.30245 -11.17695 -10.80755 -10.66662 -10.00255 -9.88187 -9.64511 -8.88165 -7.83027 -5.15922 -0.43734 0.17397 1.45678 1.47874 1.53965 1.57017 1.85252 2.51996 2.59546 2.94730 3.07420 3.35368 3.44061 3.54860 3.60015 3.80576 3.86868 3.89239 3.94245 4.00338 4.01859 4.10469 4.21601 4.29226 4.31343 4.35917 4.38794 4.52590 4.62734 4.66275 4.77797 4.81971 4.85342 4.87721 4.94976 5.02908 5.05208 5.06213 5.11588 5.13748 5.23315 5.25150 5.30266 5.42010 5.49531 5.57045 5.66196 5.71361 5.77941 6.18345 6.23565 6.63116 7.00159 7.10592 7.79899 8.48762 9.29583 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.005496 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.836895 B = 5093.204574 C = 8366.222408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.262 1.262 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.122 4.122 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.105 4.105 15 C 0.106 3.894 16 N -0.586 5.586 17 C 0.566 3.434 18 O -0.567 6.567 19 C 0.043 3.957 20 C -0.108 4.108 21 C -0.069 4.069 22 C -0.073 4.073 23 C -0.118 4.118 24 C -0.175 4.175 25 C -0.169 4.169 26 C 0.077 3.923 27 N -0.461 5.461 28 C 0.099 3.901 29 C 0.147 3.853 30 H 0.003 0.997 31 H 0.245 0.755 32 H 0.001 0.999 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.079 0.921 47 H 0.165 0.835 48 H 0.134 0.866 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.781 -8.515 -2.300 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.186 1.186 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.335 5.335 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.120 4.120 13 H 0.092 0.908 14 C -0.144 4.144 15 C -0.016 4.016 16 N -0.316 5.316 17 C 0.353 3.647 18 O -0.447 6.447 19 C -0.093 4.093 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.075 4.075 23 C -0.137 4.137 24 C -0.212 4.212 25 C -0.206 4.206 26 C -0.082 4.082 27 N -0.172 5.172 28 C -0.023 4.023 29 C 0.039 3.961 30 H 0.020 0.980 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.174 0.826 41 H 0.199 0.801 42 H 0.163 0.837 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.098 0.902 47 H 0.182 0.818 48 H 0.150 0.850 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.198 -8.681 -1.659 17.581 hybrid contribution 0.203 1.139 -0.522 1.270 sum 15.401 -7.541 -2.182 17.286 Atomic orbital electron populations 1.70176 1.06341 1.25104 1.58455 1.25582 0.96453 1.00767 1.02983 0.85220 0.78347 0.79669 0.77207 1.21615 1.22357 1.18598 1.19332 0.91519 0.83485 1.41264 0.89970 1.44424 1.02495 1.01451 1.85122 1.21327 0.83392 0.92258 0.97320 1.22594 0.97176 0.95604 1.00657 1.22200 0.95391 0.95514 0.98935 0.90787 1.21741 0.95668 0.94995 1.01969 1.21810 0.88571 0.93366 0.97820 1.48205 1.16687 1.09232 1.57457 1.18241 0.81858 0.86926 0.77630 1.90699 1.77453 1.16904 1.59678 1.21115 0.97710 0.90854 0.99663 1.22216 0.93312 1.02521 0.94814 1.21787 0.98367 0.91179 0.98044 1.20626 0.95906 0.95468 0.95539 1.21098 0.99554 0.88068 1.04956 1.23194 1.04202 0.96933 0.96869 1.23117 1.00878 1.00643 0.95967 1.23105 0.90921 0.99770 0.94424 1.67634 1.22861 1.02069 1.24664 1.22592 0.98493 0.79200 1.02061 1.21157 0.93593 0.86292 0.95012 0.98001 0.94566 0.98109 0.96025 0.91363 0.89783 0.91906 0.87309 0.88803 0.90443 0.82625 0.80122 0.83719 0.89132 0.86062 0.86135 0.90193 0.81807 0.84980 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.49 10.49 21.65 0.23 -57.26 16 2 C -0.07 -3.70 5.48 84.86 0.46 -3.23 16 3 Si 0.97 45.22 29.56 68.60 2.03 47.25 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.23 -12.60 9.84 84.03 0.83 -11.77 16 8 H 0.08 4.38 7.48 -2.91 -0.02 4.36 16 9 N -0.61 -31.53 3.35 -669.28 -2.24 -33.77 16 10 C 0.18 9.11 5.45 86.85 0.47 9.58 16 11 C -0.12 -4.51 6.54 31.62 0.21 -4.30 16 12 C -0.10 -3.51 2.62 -10.09 -0.03 -3.54 16 13 H 0.07 2.66 8.13 -2.39 -0.02 2.64 16 14 C -0.11 -2.86 5.72 30.55 0.17 -2.69 16 15 C 0.11 3.02 6.33 86.66 0.55 3.57 16 16 N -0.59 -20.13 3.01 -821.87 -2.47 -22.61 16 17 C 0.57 19.77 7.59 86.88 0.66 20.43 16 18 O -0.57 -20.95 15.87 -3.77 -0.06 -21.01 16 19 C 0.04 1.36 6.42 41.91 0.27 1.63 16 20 C -0.11 -2.66 9.63 22.61 0.22 -2.44 16 21 C -0.07 -1.28 9.88 22.45 0.22 -1.06 16 22 C -0.07 -1.51 5.63 -19.70 -0.11 -1.62 16 23 C -0.12 -1.73 6.06 -11.54 -0.07 -1.80 16 24 C -0.18 -2.60 9.86 30.59 0.30 -2.30 16 25 C -0.17 -2.65 10.17 30.59 0.31 -2.34 16 26 C 0.08 2.07 10.47 84.82 0.89 2.96 16 27 N -0.46 -15.06 6.32 -184.92 -1.17 -16.23 16 28 C 0.10 3.87 5.17 85.73 0.44 4.32 16 29 C 0.15 6.26 2.75 45.60 0.13 6.39 16 30 H 0.00 0.12 7.94 -2.39 -0.02 0.10 16 31 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.00 0.04 7.79 -2.39 -0.02 0.02 16 33 H 0.02 1.20 7.22 -2.39 -0.02 1.18 16 34 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 1.78 7.99 -2.38 -0.02 1.76 16 37 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.61 6.95 -2.39 -0.02 2.59 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.16 3.43 7.80 -2.91 -0.02 3.40 16 41 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.15 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.09 1.57 6.20 -2.39 -0.01 1.56 16 44 H 0.12 1.30 8.14 -2.38 -0.02 1.29 16 45 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.16 4.17 6.03 -2.91 -0.02 4.15 16 48 H 0.13 5.41 3.84 -53.92 -0.21 5.20 16 49 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -71.82 382.53 3.00 -68.82 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.76 Total: 23.02 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.93 Total: 11.79 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.66 Total: -129.87 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.06 Total: -21.01 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.82 3.00 -68.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042334487.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.633 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds