Wall clock time and date at job start Wed Apr 1 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47157 * 274.99889 * 3 2 1 5 5 H 1.48491 * 109.47045 * 34.99866 * 3 2 1 6 6 H 1.48504 * 109.47030 * 154.99953 * 3 2 1 7 7 C 1.38815 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00393 * 185.23354 * 7 2 1 9 9 N 1.36937 * 119.99467 * 5.23183 * 7 2 1 10 10 C 1.46885 * 125.58762 * 355.09369 * 9 7 2 11 11 C 1.54053 * 107.71279 * 177.00530 * 10 9 7 12 12 C 1.54573 * 103.66984 * 342.84654 * 11 10 9 13 13 H 1.08996 * 108.78457 * 273.79598 * 12 11 10 14 14 C 1.47658 * 125.58217 * 175.07261 * 9 7 2 15 15 H 1.09006 * 110.56771 * 322.60757 * 14 9 7 16 16 C 1.52929 * 107.99193 * 83.62947 * 14 9 7 17 17 C 1.52940 * 109.79015 * 171.84397 * 16 14 9 18 18 C 1.53056 * 108.49565 * 294.01055 * 17 16 14 19 19 N 1.44186 * 111.47757 * 153.28355 * 12 11 10 20 20 C 1.34774 * 117.75761 * 93.66502 * 19 12 11 21 21 O 1.21275 * 120.00631 * 4.80275 * 20 19 12 22 22 C 1.50705 * 119.99792 * 184.79994 * 20 19 12 23 23 C 1.50704 * 115.54962 * 65.43714 * 22 20 19 24 24 C 1.38223 * 119.61747 * 20.55362 * 23 22 20 25 25 C 1.38627 * 119.16150 * 179.97438 * 24 23 22 26 26 C 1.38670 * 118.41981 * 359.97438 * 25 24 23 27 27 C 1.38189 * 119.16455 * 359.97438 * 26 25 24 28 28 N 1.31856 * 119.61636 * 200.27718 * 23 22 20 29 29 C 1.52999 * 117.52179 * 211.14186 * 22 20 19 30 30 C 1.52999 * 60.00343 * 107.47946 * 29 22 20 31 31 H 0.96992 * 119.99660 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.80992 * 296.55802 * 10 9 7 33 33 H 1.08996 * 109.81055 * 57.45320 * 10 9 7 34 34 H 1.09005 * 110.56984 * 101.43055 * 11 10 9 35 35 H 1.08999 * 110.57264 * 224.15746 * 11 10 9 36 36 H 1.08998 * 109.41596 * 51.74720 * 16 14 9 37 37 H 1.08996 * 109.36071 * 291.90714 * 16 14 9 38 38 H 1.08994 * 109.63265 * 174.30762 * 17 16 14 39 39 H 1.08999 * 109.80053 * 53.80797 * 17 16 14 40 40 H 1.09001 * 109.45477 * 293.77502 * 18 17 16 41 41 H 1.09000 * 109.45630 * 173.83105 * 18 17 16 42 42 H 1.07999 * 120.42292 * 359.97438 * 24 23 22 43 43 H 1.08001 * 120.79396 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.42231 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.61633 * 179.97438 * 27 26 25 46 46 H 1.09000 * 117.50187 * 214.97128 * 29 22 20 47 47 H 1.09007 * 117.49316 * 359.97438 * 29 22 20 48 48 H 1.08997 * 117.50260 * 252.51519 * 30 29 22 49 49 H 1.09003 * 117.49448 * 107.48880 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5967 1.4120 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0848 9 7 1.3299 -2.3855 -0.1092 10 6 -0.1314 -2.5325 -0.1293 11 6 -0.4495 -4.0250 -0.3407 12 6 0.8791 -4.6099 -0.8718 13 1 0.9119 -4.4808 -1.9536 14 6 1.9451 -3.7227 -0.2258 15 1 2.8445 -3.6783 -0.8401 16 6 2.2822 -4.2122 1.1833 17 6 2.7338 -5.6724 1.1300 18 6 1.5462 -6.5322 0.6908 19 7 1.0020 -6.0116 -0.5569 20 6 0.5905 -6.9012 -1.4819 21 8 0.2170 -6.5162 -2.5696 22 6 0.5946 -8.3745 -1.1647 23 6 -0.3599 -8.8090 -0.0825 24 6 -1.4366 -8.0051 0.2419 25 6 -2.3090 -8.4143 1.2385 26 6 -2.0651 -9.6223 1.8741 27 6 -0.9686 -10.3732 1.4953 28 7 -0.1615 -9.9542 0.5402 29 6 0.8415 -9.3459 -2.3206 30 6 1.9289 -9.1159 -1.2692 31 1 -0.4849 0.8400 0.0004 32 1 -0.5496 -2.1965 0.8196 33 1 -0.5505 -1.9461 -0.9469 34 1 -0.7259 -4.4951 0.6031 35 1 -1.2453 -4.1466 -1.0756 36 1 1.3991 -4.1288 1.8167 37 1 3.0836 -3.5998 1.5964 38 1 3.0691 -5.9882 2.1179 39 1 3.5489 -5.7809 0.4146 40 1 0.7756 -6.5077 1.4613 41 1 1.8775 -7.5599 0.5416 42 1 -1.5962 -7.0701 -0.2745 43 1 -3.1590 -7.8070 1.5129 44 1 -2.7242 -9.9724 2.6548 45 1 -0.7715 -11.3150 1.9857 46 1 0.3135 -10.2992 -2.2985 47 1 1.0006 -8.9194 -3.3111 48 1 2.8037 -8.5382 -1.5678 49 1 2.1162 -9.9180 -0.5552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049473648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:56 Heat of formation + Delta-G solvation = 65.120493 kcal Electronic energy + Delta-G solvation = -31250.380998 eV Core-core repulsion = 27372.125585 eV Total energy + Delta-G solvation = -3878.255413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24451 -39.95393 -38.28671 -36.43585 -35.35261 -32.65353 -32.56451 -32.22197 -31.26144 -29.08724 -28.39594 -25.82773 -24.40174 -24.28931 -23.67473 -22.68535 -22.24453 -21.90834 -20.19911 -19.56542 -18.18272 -17.68815 -16.89603 -16.59516 -16.37829 -15.88926 -15.39567 -14.97020 -14.79162 -14.58049 -14.34300 -14.18347 -14.02243 -13.65228 -13.47646 -13.36289 -13.08216 -12.79032 -12.45080 -12.09922 -12.03342 -11.96703 -11.64941 -11.40868 -11.15331 -10.96597 -10.95277 -10.89460 -10.78692 -10.66434 -10.42844 -10.10294 -10.07162 -10.04804 -9.71164 -9.68145 -9.59560 -9.48681 -9.02747 -8.58863 -8.31546 -6.86945 -5.73002 -3.07070 0.84465 1.06373 2.54636 3.04675 3.34395 3.39805 3.45011 3.46765 3.84672 3.97032 4.27346 4.44410 4.48152 4.63560 4.75338 4.83472 4.88561 5.00785 5.04135 5.15278 5.19014 5.30049 5.39675 5.46152 5.49029 5.51083 5.55481 5.57888 5.67815 5.74030 5.76248 5.87875 5.91604 6.00180 6.01702 6.02814 6.09174 6.21839 6.30247 6.36833 6.45494 6.53794 6.57601 6.74886 6.97354 7.07892 7.51364 7.54524 7.64448 7.73058 7.82144 8.23226 8.30690 9.19825 9.79772 10.44978 11.37984 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.003220 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.556883 B = 8692.490625 C = 9044.022670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.134 3.866 13 H 0.094 0.906 14 C 0.162 3.838 15 H 0.055 0.945 16 C -0.130 4.130 17 C -0.131 4.131 18 C 0.110 3.890 19 N -0.577 5.577 20 C 0.546 3.454 21 O -0.531 6.531 22 C -0.121 4.121 23 C 0.176 3.824 24 C -0.157 4.157 25 C -0.068 4.068 26 C -0.178 4.178 27 C 0.102 3.898 28 N -0.481 5.481 29 C -0.125 4.125 30 C -0.140 4.140 31 H 0.252 0.748 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.157 0.843 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -22.167 3.631 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.030 3.970 13 H 0.112 0.888 14 C 0.054 3.946 15 H 0.073 0.927 16 C -0.170 4.170 17 C -0.169 4.169 18 C -0.012 4.012 19 N -0.308 5.308 20 C 0.331 3.669 21 O -0.407 6.407 22 C -0.125 4.125 23 C 0.039 3.961 24 C -0.177 4.177 25 C -0.094 4.094 26 C -0.198 4.198 27 C -0.055 4.055 28 N -0.190 5.190 29 C -0.163 4.163 30 C -0.177 4.177 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.174 0.826 46 H 0.122 0.878 47 H 0.127 0.873 48 H 0.120 0.880 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.434 -22.152 2.860 22.340 hybrid contribution -0.515 1.508 0.573 1.694 sum -0.949 -20.644 3.433 20.949 Atomic orbital electron populations 1.69975 1.04905 1.25050 1.56638 1.24820 0.95685 0.97633 1.02026 0.86120 0.78639 0.83603 0.77522 1.21591 1.21789 1.20644 1.19018 0.90837 0.82208 1.43542 0.90385 1.44498 1.01445 1.00020 1.85986 1.21071 0.84404 0.88225 1.00937 1.23093 0.96461 0.99696 0.99757 1.21190 0.96678 0.78057 1.01060 0.88793 1.20829 0.94024 0.86245 0.93522 0.92695 1.22122 1.01426 0.93300 1.00202 1.21834 0.97044 0.96879 1.01176 1.21522 0.96120 0.97859 0.85736 1.46990 1.61044 1.06077 1.16662 1.19304 0.77607 0.85810 0.84143 1.90702 1.47315 1.79844 1.22858 1.19991 1.00679 0.91897 0.99948 1.19738 0.92620 0.90267 0.93492 1.21957 0.95457 1.01415 0.98839 1.21607 0.98346 0.95596 0.93822 1.22141 0.99715 0.96109 1.01840 1.22679 0.90607 0.99221 0.92989 1.67257 1.29558 1.14407 1.07771 1.23040 1.00924 0.98425 0.93890 1.23126 0.90471 1.01829 1.02272 0.93734 0.94477 0.92625 0.92684 0.92023 0.92047 0.91864 0.91213 0.91635 0.92448 0.89976 0.84857 0.84573 0.84750 0.82610 0.87782 0.87326 0.88024 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.32 55.49 0.57 -26.19 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.82 2.94 -163.88 -0.48 -15.31 16 10 C 0.18 4.34 5.41 -3.28 -0.02 4.32 16 11 C -0.15 -2.95 6.46 -25.36 -0.16 -3.11 16 12 C 0.13 2.53 2.80 -68.34 -0.19 2.33 16 13 H 0.09 1.98 7.01 -51.93 -0.36 1.61 16 14 C 0.16 3.29 3.27 -67.34 -0.22 3.07 16 15 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.13 -2.28 5.31 -26.80 -0.14 -2.42 16 17 C -0.13 -1.75 6.10 -26.73 -0.16 -1.91 16 18 C 0.11 1.45 5.30 -4.43 -0.02 1.43 16 19 N -0.58 -8.97 2.79 -167.41 -0.47 -9.43 16 20 C 0.55 8.57 5.41 -10.98 -0.06 8.51 16 21 O -0.53 -10.17 15.95 5.56 0.09 -10.09 16 22 C -0.12 -1.52 1.27 -156.80 -0.20 -1.72 16 23 C 0.18 2.13 5.28 -82.59 -0.44 1.70 16 24 C -0.16 -1.90 9.24 -39.44 -0.36 -2.27 16 25 C -0.07 -0.66 10.18 -39.28 -0.40 -1.06 16 26 C -0.18 -1.46 10.11 -39.44 -0.40 -1.86 16 27 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 28 N -0.48 -5.28 9.37 -9.47 -0.09 -5.37 16 29 C -0.12 -1.38 9.74 -26.73 -0.26 -1.64 16 30 C -0.14 -1.43 8.39 -26.73 -0.22 -1.65 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 32 H 0.04 0.98 7.73 -51.92 -0.40 0.58 16 33 H 0.06 1.52 7.12 -51.93 -0.37 1.15 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.96 5.12 -51.93 -0.27 0.70 16 42 H 0.13 1.82 7.09 -52.49 -0.37 1.45 16 43 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.11 1.25 8.00 -51.92 -0.42 0.83 16 48 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.12 1.10 7.62 -51.93 -0.40 0.70 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -31.57 384.73 -10.93 -42.50 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.62 Total: 3.32 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.71 Total: -2.18 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.46 Total: -56.30 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.57 -10.93 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049473648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.624 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds