Wall clock time and date at job start Wed Apr 1 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47157 * 274.99889 * 3 2 1 5 5 H 1.48491 * 109.47045 * 34.99866 * 3 2 1 6 6 H 1.48504 * 109.47030 * 154.99953 * 3 2 1 7 7 C 1.38815 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00393 * 185.23354 * 7 2 1 9 9 N 1.36937 * 119.99467 * 5.23183 * 7 2 1 10 10 C 1.46885 * 125.58762 * 355.09369 * 9 7 2 11 11 C 1.54053 * 107.71279 * 177.00530 * 10 9 7 12 12 C 1.54573 * 103.66984 * 342.84654 * 11 10 9 13 13 H 1.08996 * 108.78457 * 273.79598 * 12 11 10 14 14 C 1.47658 * 125.58217 * 175.07261 * 9 7 2 15 15 H 1.09006 * 110.56771 * 322.60757 * 14 9 7 16 16 C 1.52929 * 107.99193 * 83.62947 * 14 9 7 17 17 C 1.52940 * 109.79015 * 171.84397 * 16 14 9 18 18 C 1.53056 * 108.49565 * 294.01055 * 17 16 14 19 19 N 1.44186 * 111.47757 * 153.28355 * 12 11 10 20 20 C 1.34774 * 117.75761 * 93.66502 * 19 12 11 21 21 O 1.21275 * 120.00631 * 4.80275 * 20 19 12 22 22 C 1.50705 * 119.99792 * 184.79994 * 20 19 12 23 23 C 1.50704 * 115.54962 * 65.43714 * 22 20 19 24 24 C 1.38223 * 119.61747 * 20.55362 * 23 22 20 25 25 C 1.38627 * 119.16150 * 179.97438 * 24 23 22 26 26 C 1.38670 * 118.41981 * 359.97438 * 25 24 23 27 27 C 1.38189 * 119.16455 * 359.97438 * 26 25 24 28 28 N 1.31856 * 119.61636 * 200.27718 * 23 22 20 29 29 C 1.52999 * 117.52179 * 211.14186 * 22 20 19 30 30 C 1.52999 * 60.00343 * 107.47946 * 29 22 20 31 31 H 0.96992 * 119.99660 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.80992 * 296.55802 * 10 9 7 33 33 H 1.08996 * 109.81055 * 57.45320 * 10 9 7 34 34 H 1.09005 * 110.56984 * 101.43055 * 11 10 9 35 35 H 1.08999 * 110.57264 * 224.15746 * 11 10 9 36 36 H 1.08998 * 109.41596 * 51.74720 * 16 14 9 37 37 H 1.08996 * 109.36071 * 291.90714 * 16 14 9 38 38 H 1.08994 * 109.63265 * 174.30762 * 17 16 14 39 39 H 1.08999 * 109.80053 * 53.80797 * 17 16 14 40 40 H 1.09001 * 109.45477 * 293.77502 * 18 17 16 41 41 H 1.09000 * 109.45630 * 173.83105 * 18 17 16 42 42 H 1.07999 * 120.42292 * 359.97438 * 24 23 22 43 43 H 1.08001 * 120.79396 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.42231 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.61633 * 179.97438 * 27 26 25 46 46 H 1.09000 * 117.50187 * 214.97128 * 29 22 20 47 47 H 1.09007 * 117.49316 * 359.97438 * 29 22 20 48 48 H 1.08997 * 117.50260 * 252.51519 * 30 29 22 49 49 H 1.09003 * 117.49448 * 107.48880 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5967 1.4120 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0848 9 7 1.3299 -2.3855 -0.1092 10 6 -0.1314 -2.5325 -0.1293 11 6 -0.4495 -4.0250 -0.3407 12 6 0.8791 -4.6099 -0.8718 13 1 0.9119 -4.4808 -1.9536 14 6 1.9451 -3.7227 -0.2258 15 1 2.8445 -3.6783 -0.8401 16 6 2.2822 -4.2122 1.1833 17 6 2.7338 -5.6724 1.1300 18 6 1.5462 -6.5322 0.6908 19 7 1.0020 -6.0116 -0.5569 20 6 0.5905 -6.9012 -1.4819 21 8 0.2170 -6.5162 -2.5696 22 6 0.5946 -8.3745 -1.1647 23 6 -0.3599 -8.8090 -0.0825 24 6 -1.4366 -8.0051 0.2419 25 6 -2.3090 -8.4143 1.2385 26 6 -2.0651 -9.6223 1.8741 27 6 -0.9686 -10.3732 1.4953 28 7 -0.1615 -9.9542 0.5402 29 6 0.8415 -9.3459 -2.3206 30 6 1.9289 -9.1159 -1.2692 31 1 -0.4849 0.8400 0.0004 32 1 -0.5496 -2.1965 0.8196 33 1 -0.5505 -1.9461 -0.9469 34 1 -0.7259 -4.4951 0.6031 35 1 -1.2453 -4.1466 -1.0756 36 1 1.3991 -4.1288 1.8167 37 1 3.0836 -3.5998 1.5964 38 1 3.0691 -5.9882 2.1179 39 1 3.5489 -5.7809 0.4146 40 1 0.7756 -6.5077 1.4613 41 1 1.8775 -7.5599 0.5416 42 1 -1.5962 -7.0701 -0.2745 43 1 -3.1590 -7.8070 1.5129 44 1 -2.7242 -9.9724 2.6548 45 1 -0.7715 -11.3150 1.9857 46 1 0.3135 -10.2992 -2.2985 47 1 1.0006 -8.9194 -3.3111 48 1 2.8037 -8.5382 -1.5678 49 1 2.1162 -9.9180 -0.5552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049473648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:55 Heat of formation + Delta-G solvation = 47.539305 kcal Electronic energy + Delta-G solvation = -31251.143376 eV Core-core repulsion = 27372.125585 eV Total energy + Delta-G solvation = -3879.017791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34537 -40.99670 -39.66731 -37.48216 -36.92065 -34.20747 -33.98221 -33.31783 -32.02614 -30.94895 -30.00327 -27.10553 -26.19023 -25.45863 -24.43344 -23.71365 -23.22361 -23.19970 -22.06030 -20.80912 -19.50385 -18.92430 -18.67286 -17.66258 -17.24890 -16.92591 -16.80963 -16.29735 -16.07925 -16.02457 -15.72640 -15.38003 -15.06094 -14.89269 -14.83667 -14.50983 -14.17420 -14.10657 -13.84128 -13.69378 -13.59251 -13.15167 -12.84453 -12.81017 -12.67934 -12.45547 -12.39145 -12.36327 -12.09394 -12.02080 -11.80348 -11.75110 -11.66396 -11.59473 -11.23578 -10.82670 -10.80385 -10.70108 -10.42201 -9.78459 -9.69786 -8.92740 -7.86232 -5.22439 0.10590 0.33004 1.34396 1.44934 1.47457 1.55776 1.79926 2.48349 2.53246 3.02365 3.09440 3.29645 3.33170 3.51578 3.57245 3.78993 3.84220 3.88507 3.95772 3.99262 4.07630 4.08426 4.09293 4.23456 4.27461 4.29702 4.47919 4.52327 4.56398 4.61164 4.69513 4.71383 4.75761 4.79236 4.86141 4.91150 4.94005 5.00169 5.13918 5.20950 5.21621 5.29765 5.30418 5.39122 5.52777 5.58345 5.61805 5.70682 5.76369 6.16928 6.27387 6.98487 7.02892 7.07529 7.73810 8.38493 9.23972 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.003220 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.556883 B = 8692.490625 C = 9044.022670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.085 0.915 9 N -0.615 5.615 10 C 0.192 3.808 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.067 0.933 14 C 0.158 3.842 15 H 0.051 0.949 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.112 3.888 19 N -0.574 5.574 20 C 0.547 3.453 21 O -0.574 6.574 22 C -0.133 4.133 23 C 0.167 3.833 24 C -0.182 4.182 25 C -0.074 4.074 26 C -0.168 4.168 27 C 0.102 3.898 28 N -0.488 5.488 29 C -0.125 4.125 30 C -0.117 4.117 31 H 0.246 0.754 32 H 0.007 0.993 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.149 0.851 44 H 0.168 0.832 45 H 0.191 0.809 46 H 0.116 0.884 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -25.487 5.618 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.339 5.339 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.046 3.954 13 H 0.085 0.915 14 C 0.051 3.949 15 H 0.069 0.931 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.009 4.009 19 N -0.304 5.304 20 C 0.335 3.665 21 O -0.453 6.453 22 C -0.137 4.137 23 C 0.030 3.970 24 C -0.202 4.202 25 C -0.099 4.099 26 C -0.187 4.187 27 C -0.055 4.055 28 N -0.198 5.198 29 C -0.163 4.163 30 C -0.154 4.154 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.167 0.833 44 H 0.185 0.815 45 H 0.208 0.792 46 H 0.134 0.866 47 H 0.116 0.884 48 H 0.125 0.875 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.944 -25.523 4.866 26.000 hybrid contribution -0.981 2.463 -0.035 2.651 sum -0.037 -23.060 4.831 23.560 Atomic orbital electron populations 1.70195 1.06383 1.25241 1.58106 1.25661 0.96539 1.00984 1.02525 0.85073 0.77959 0.79255 0.77135 1.21732 1.22185 1.18943 1.19401 0.91374 0.83308 1.42440 0.89716 1.44740 1.01805 1.01384 1.86009 1.20721 0.84351 0.90553 0.97722 1.22869 0.97126 0.96618 1.00627 1.20702 0.95398 0.80124 0.99175 0.91526 1.21022 0.93830 0.84538 0.95492 0.93127 1.21904 1.00582 0.96261 0.97176 1.21804 0.97170 0.93434 1.03412 1.21697 0.96025 0.98807 0.84385 1.46953 1.61204 1.04460 1.17776 1.19873 0.76145 0.87251 0.83225 1.90678 1.49013 1.80869 1.24746 1.19838 1.02966 0.89442 1.01430 1.19566 0.92579 0.91030 0.93853 1.21870 0.96955 1.01043 1.00326 1.21856 0.98262 0.96597 0.93234 1.22505 0.99702 0.94862 1.01677 1.23325 0.90027 1.00188 0.91982 1.67273 1.30370 1.13681 1.08434 1.23084 1.01549 0.98306 0.93324 1.23234 0.89463 1.01191 1.01532 0.94437 0.97464 0.96611 0.91012 0.92037 0.93466 0.92664 0.87941 0.90677 0.92195 0.87626 0.87549 0.83305 0.81478 0.79235 0.86614 0.88364 0.87467 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.03 10.32 21.65 0.22 -57.81 16 2 C -0.06 -3.68 5.48 84.86 0.47 -3.21 16 3 Si 0.98 46.18 29.56 68.60 2.03 48.21 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.25 10.27 84.03 0.86 -12.39 16 8 H 0.09 4.51 7.83 -2.92 -0.02 4.49 16 9 N -0.61 -31.84 2.94 -672.41 -1.97 -33.82 16 10 C 0.19 9.92 5.41 86.66 0.47 10.39 16 11 C -0.13 -5.46 6.46 31.49 0.20 -5.25 16 12 C 0.15 5.87 2.80 45.95 0.13 6.00 16 13 H 0.07 2.96 7.01 -2.39 -0.02 2.94 16 14 C 0.16 6.52 3.27 44.74 0.15 6.67 16 15 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 16 C -0.12 -4.07 5.31 30.55 0.16 -3.91 16 17 C -0.12 -2.85 6.10 30.59 0.19 -2.67 16 18 C 0.11 2.70 5.30 86.54 0.46 3.15 16 19 N -0.57 -17.64 2.79 -801.95 -2.24 -19.88 16 20 C 0.55 17.22 5.41 87.66 0.47 17.70 16 21 O -0.57 -22.84 15.95 -3.01 -0.05 -22.89 16 22 C -0.13 -3.15 1.27 -53.67 -0.07 -3.22 16 23 C 0.17 3.72 5.28 42.55 0.22 3.95 16 24 C -0.18 -4.26 9.24 22.36 0.21 -4.06 16 25 C -0.07 -1.29 10.18 22.47 0.23 -1.06 16 26 C -0.17 -2.10 10.11 22.36 0.23 -1.87 16 27 C 0.10 1.36 11.18 84.67 0.95 2.30 16 28 N -0.49 -9.09 9.37 -183.88 -1.72 -10.82 16 29 C -0.12 -2.57 9.74 30.59 0.30 -2.27 16 30 C -0.12 -2.07 8.39 30.60 0.26 -1.81 16 31 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.01 0.41 7.73 -2.38 -0.02 0.39 16 33 H 0.02 0.92 7.12 -2.39 -0.02 0.91 16 34 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.11 2.11 5.12 -2.39 -0.01 2.10 16 42 H 0.11 3.01 7.09 -2.91 -0.02 2.99 16 43 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 45 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 46 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.10 2.23 8.00 -2.38 -0.02 2.21 16 48 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.13 1.97 7.62 -2.39 -0.02 1.95 16 Total: -1.00 -73.13 384.73 3.08 -70.04 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.94 Total: 18.52 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.88 Total: 8.45 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.71 Total: -122.32 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.13 3.08 -70.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049473648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.581 kcal (2) G-P(sol) polarization free energy of solvation -73.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds