Wall clock time and date at job start Wed Apr 1 2020 00:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47251 * 274.99754 * 3 2 1 5 5 H 1.48503 * 109.47256 * 34.99774 * 3 2 1 6 6 H 1.48503 * 109.47334 * 154.99511 * 3 2 1 7 7 C 1.38807 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00104 * 185.66532 * 7 2 1 9 9 N 1.36938 * 119.99892 * 5.66858 * 7 2 1 10 10 C 1.48383 * 126.55951 * 355.30038 * 9 7 2 11 11 C 1.55479 * 106.97143 * 174.47615 * 10 9 7 12 12 C 1.53430 * 101.67353 * 337.39868 * 11 10 9 13 13 H 1.09001 * 111.14815 * 282.02045 * 12 11 10 14 14 C 1.45025 * 126.56488 * 175.30252 * 9 7 2 15 15 H 1.08995 * 108.70620 * 96.50074 * 14 9 7 16 16 C 1.51081 * 119.19104 * 331.22240 * 14 9 7 17 17 C 1.53876 * 107.34257 * 176.11565 * 16 14 9 18 18 C 1.52709 * 111.47090 * 56.96390 * 17 16 14 19 19 N 1.45719 * 116.37491 * 152.73292 * 12 11 10 20 20 C 1.34776 * 122.22376 * 9.92156 * 19 12 11 21 21 O 1.21547 * 120.00551 * 4.83748 * 20 19 12 22 22 C 1.47844 * 119.99878 * 184.83737 * 20 19 12 23 23 C 1.40020 * 120.55794 * 307.16615 * 22 20 19 24 24 C 1.38364 * 118.28543 * 179.73074 * 23 22 20 25 25 C 1.38347 * 119.30447 * 0.54303 * 24 23 22 26 26 N 1.31930 * 121.07882 * 359.71656 * 25 24 23 27 27 C 1.31693 * 121.87875 * 0.02562 * 26 25 24 28 28 C 1.50706 * 119.71529 * 179.97438 * 27 26 25 29 29 C 1.52996 * 117.49635 * 3.33928 * 28 27 26 30 30 C 1.52999 * 117.49568 * 294.71702 * 28 27 26 31 31 H 0.96998 * 120.00431 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.96173 * 293.85274 * 10 9 7 33 33 H 1.08997 * 109.96125 * 55.06125 * 10 9 7 34 34 H 1.09002 * 110.98723 * 95.50277 * 11 10 9 35 35 H 1.09004 * 110.98300 * 219.30543 * 11 10 9 36 36 H 1.09000 * 109.88570 * 56.66031 * 16 14 9 37 37 H 1.08999 * 109.88674 * 295.57336 * 16 14 9 38 38 H 1.09001 * 109.06935 * 177.45721 * 17 16 14 39 39 H 1.09001 * 109.07014 * 296.46850 * 17 16 14 40 40 H 1.08999 * 109.16235 * 71.83618 * 18 17 16 41 41 H 1.08998 * 109.16219 * 191.02357 * 18 17 16 42 42 H 1.08005 * 120.85871 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.34757 * 180.27926 * 24 23 22 44 44 H 1.08000 * 119.46119 * 179.69520 * 25 24 23 45 45 H 1.08997 * 115.54822 * 149.04520 * 28 27 26 46 46 H 1.08996 * 117.50342 * 359.97438 * 29 28 27 47 47 H 1.08998 * 117.49565 * 145.02306 * 29 28 27 48 48 H 1.09004 * 117.49770 * 214.97982 * 30 28 27 49 49 H 1.09002 * 117.50294 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5043 2.6199 0.8030 6 1 3.5965 1.4122 0.5918 7 6 2.0103 -1.2020 -0.0005 8 1 3.0864 -1.2043 0.0918 9 7 1.3307 -2.3851 -0.1182 10 6 -0.1425 -2.5581 -0.1554 11 6 -0.4157 -4.0620 -0.4401 12 6 0.8970 -4.4955 -1.1056 13 1 0.9355 -4.1733 -2.1462 14 6 1.9131 -3.7085 -0.2303 15 1 1.9315 -4.1672 0.7583 16 6 3.2768 -3.8624 -0.8621 17 6 3.6685 -5.3464 -0.7521 18 6 2.6272 -6.2495 -1.4095 19 7 1.2621 -5.8990 -0.9637 20 6 0.4115 -6.8156 -0.4609 21 8 -0.7307 -6.5006 -0.1899 22 6 0.8678 -8.2042 -0.2389 23 6 1.4727 -8.9287 -1.2732 24 6 1.8870 -10.2228 -1.0120 25 6 1.6821 -10.7583 0.2470 26 7 1.1043 -10.0536 1.2011 27 6 0.6975 -8.8169 1.0030 28 6 0.0426 -8.0567 2.1275 29 6 -0.0477 -8.7485 3.4892 30 6 -1.3056 -8.5707 2.6365 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5746 -2.2768 0.8049 33 1 -0.5693 -1.9451 -0.9491 34 1 -0.5834 -4.6107 0.4867 35 1 -1.2576 -4.1835 -1.1217 36 1 4.0030 -3.2470 -0.3310 37 1 3.2352 -3.5668 -1.9104 38 1 4.6308 -5.4979 -1.2409 39 1 3.7581 -5.6139 0.3008 40 1 2.6904 -6.1392 -2.4921 41 1 2.8340 -7.2862 -1.1438 42 1 1.6158 -8.4875 -2.2485 43 1 2.3615 -10.8101 -1.7842 44 1 2.0000 -11.7698 0.4522 45 1 0.1998 -6.9782 2.1200 46 1 0.3661 -9.7535 3.5716 47 1 0.0501 -8.1250 4.3778 48 1 -2.0353 -7.8302 2.9642 49 1 -1.7192 -9.4584 2.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:32 Heat of formation + Delta-G solvation = 72.146812 kcal Electronic energy + Delta-G solvation = -31050.301345 eV Core-core repulsion = 27172.350615 eV Total energy + Delta-G solvation = -3877.950729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11948 -39.79358 -37.66110 -36.93564 -35.48035 -33.01542 -32.64206 -31.96940 -31.29465 -28.91452 -28.24809 -25.51106 -24.81941 -24.45448 -23.62790 -22.29321 -21.56878 -21.20825 -20.69074 -19.77591 -19.18495 -17.22974 -17.10945 -16.42518 -16.39515 -15.68581 -15.41558 -15.08165 -14.64432 -14.56135 -14.28049 -14.16619 -14.01739 -13.72524 -13.45870 -13.34151 -12.97306 -12.75952 -12.47929 -12.28106 -11.89528 -11.73091 -11.59162 -11.49041 -11.17999 -10.90123 -10.85888 -10.72048 -10.56010 -10.50053 -10.47068 -10.11692 -10.03024 -9.96521 -9.85537 -9.81420 -9.64465 -9.10689 -8.94513 -8.58303 -8.26893 -6.83893 -5.71601 -3.05213 0.62202 0.93279 2.75373 3.05678 3.39763 3.43093 3.44835 3.47160 3.92924 4.00987 4.30285 4.47573 4.50079 4.53304 4.78646 4.80876 4.95881 5.05350 5.06420 5.09022 5.13352 5.28508 5.33748 5.40421 5.42042 5.58211 5.60832 5.68549 5.74090 5.75635 5.82150 5.84054 5.88795 5.97697 6.05996 6.11753 6.19738 6.23094 6.27241 6.36186 6.37389 6.53227 6.69549 6.76031 6.86670 7.13748 7.54456 7.60519 7.66809 7.72186 7.83200 8.24043 8.32130 9.18356 9.82385 10.50731 11.40515 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.003318 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.874349 B = 8436.051486 C = 9200.744295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.127 4.127 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.160 3.840 15 H 0.016 0.984 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.591 5.591 20 C 0.564 3.436 21 O -0.514 6.514 22 C -0.165 4.165 23 C -0.046 4.046 24 C -0.186 4.186 25 C 0.117 3.883 26 N -0.484 5.484 27 C 0.210 3.790 28 C -0.117 4.117 29 C -0.161 4.161 30 C -0.147 4.147 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -21.732 -2.062 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.046 3.954 11 C -0.165 4.165 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.051 3.949 15 H 0.033 0.967 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.324 5.324 20 C 0.350 3.650 21 O -0.390 6.390 22 C -0.170 4.170 23 C -0.073 4.073 24 C -0.205 4.205 25 C -0.041 4.041 26 N -0.192 5.192 27 C 0.072 3.928 28 C -0.136 4.136 29 C -0.198 4.198 30 C -0.184 4.184 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.176 0.824 45 H 0.140 0.860 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.119 0.881 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.176 -21.689 -1.063 22.113 hybrid contribution 0.792 1.259 -1.093 1.846 sum 4.968 -20.430 -2.156 21.135 Atomic orbital electron populations 1.69952 1.04907 1.25080 1.56507 1.24820 0.95642 0.97607 1.02124 0.86156 0.78692 0.83796 0.77469 1.21642 1.21765 1.20665 1.18985 0.90813 0.82292 1.43475 0.90358 1.44074 1.01745 1.00262 1.85577 1.21774 0.83703 0.89123 1.00779 1.22919 0.94565 0.98271 1.00788 1.22452 0.98872 0.77775 0.99792 0.90030 1.20749 0.91389 0.87679 0.95122 0.96662 1.21424 0.98468 0.93958 1.01503 1.21901 0.97668 0.95968 1.01270 1.21899 0.81614 0.99351 0.98994 1.47935 1.13600 1.08855 1.61988 1.17951 0.85244 0.83909 0.77856 1.90822 1.17887 1.79540 1.50718 1.20826 1.03632 0.96702 0.95868 1.21751 0.92827 0.94012 0.98679 1.22053 1.03270 0.96137 0.99076 1.22886 0.93066 0.99366 0.88756 1.67434 1.11054 1.06549 1.34194 1.20388 0.91495 0.89329 0.91620 1.20904 1.01427 0.98554 0.92740 1.22979 1.01399 1.02524 0.92885 1.22862 0.90301 1.02753 1.02531 0.93703 0.94413 0.92258 0.90477 0.91880 0.91409 0.91681 0.90872 0.91865 0.91332 0.90226 0.84180 0.84220 0.82377 0.86027 0.87530 0.88556 0.88061 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 10.49 55.49 0.58 -26.38 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.22 9.92 -15.06 -0.15 -6.37 16 8 H 0.08 2.06 7.37 -52.48 -0.39 1.67 16 9 N -0.59 -14.98 3.35 -163.28 -0.55 -15.52 16 10 C 0.17 4.26 5.49 -1.69 -0.01 4.25 16 11 C -0.13 -2.65 4.94 -25.19 -0.12 -2.77 16 12 C 0.12 2.15 3.32 -66.80 -0.22 1.93 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.16 3.28 2.58 -68.36 -0.18 3.10 16 15 H 0.02 0.35 8.04 -51.93 -0.42 -0.06 16 16 C -0.11 -1.93 5.46 -27.24 -0.15 -2.08 16 17 C -0.13 -1.63 5.93 -26.42 -0.16 -1.78 16 18 C 0.10 1.23 5.54 -3.47 -0.02 1.21 16 19 N -0.59 -9.12 2.91 -165.13 -0.48 -9.60 16 20 C 0.56 9.04 6.30 -12.33 -0.08 8.96 16 21 O -0.51 -9.77 12.99 5.32 0.07 -9.71 16 22 C -0.17 -2.19 5.01 -104.82 -0.53 -2.72 16 23 C -0.05 -0.46 7.61 -38.87 -0.30 -0.76 16 24 C -0.19 -1.47 10.10 -39.49 -0.40 -1.87 16 25 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 26 N -0.48 -5.82 9.29 -9.14 -0.08 -5.90 16 27 C 0.21 2.83 6.49 -82.17 -0.53 2.30 16 28 C -0.12 -1.62 4.91 -91.77 -0.45 -2.07 16 29 C -0.16 -1.84 10.02 -26.73 -0.27 -2.11 16 30 C -0.15 -1.80 10.23 -26.73 -0.27 -2.07 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 1.03 7.90 -51.93 -0.41 0.62 16 33 H 0.06 1.62 7.08 -51.93 -0.37 1.25 16 34 H 0.08 1.67 6.37 -51.93 -0.33 1.34 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 37 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.80 4.84 -51.93 -0.25 0.55 16 42 H 0.14 1.14 7.34 -52.48 -0.38 0.75 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.90 7.29 -51.93 -0.38 1.52 16 46 H 0.11 1.20 7.54 -51.93 -0.39 0.80 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -32.31 379.57 -11.39 -43.70 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.50 Total: 3.03 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -4.12 Total: -2.25 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.53 Total: -57.41 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.31 -11.39 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.852 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds