Wall clock time and date at job start Wed Apr 1 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48503 * 109.47117 * 240.00169 * 3 2 1 5 5 H 1.48497 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46958 * 120.00483 * 3 2 1 7 7 C 1.38820 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99624 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.46877 * 125.58517 * 0.02658 * 9 7 2 11 11 C 1.54058 * 107.70801 * 177.00584 * 10 9 7 12 12 C 1.54564 * 103.67208 * 342.84455 * 11 10 9 13 13 H 1.09002 * 108.78988 * 273.79792 * 12 11 10 14 14 C 1.47659 * 125.58071 * 180.02562 * 9 7 2 15 15 H 1.09007 * 110.56727 * 322.61607 * 14 9 7 16 16 C 1.52930 * 107.98935 * 83.63084 * 14 9 7 17 17 C 1.52945 * 109.78944 * 171.84154 * 16 14 9 18 18 C 1.53046 * 108.49444 * 294.01031 * 17 16 14 19 19 N 1.44188 * 111.47849 * 153.28714 * 12 11 10 20 20 C 1.34774 * 117.76409 * 93.66826 * 19 12 11 21 21 O 1.21551 * 119.99785 * 5.44493 * 20 19 12 22 22 C 1.47840 * 120.00119 * 185.45231 * 20 19 12 23 23 C 1.40024 * 120.55955 * 47.03088 * 22 20 19 24 24 C 1.38359 * 118.28922 * 179.97438 * 23 22 20 25 25 C 1.38350 * 119.30088 * 359.97438 * 24 23 22 26 26 N 1.31925 * 121.08233 * 359.73840 * 25 24 23 27 27 C 1.31694 * 121.87711 * 0.53898 * 26 25 24 28 28 C 1.50703 * 119.71812 * 179.75186 * 27 26 25 29 29 C 1.53003 * 117.49475 * 357.08597 * 28 27 26 30 30 C 1.52996 * 117.49842 * 65.74551 * 28 27 26 31 31 H 0.96998 * 119.99971 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.81296 * 296.55609 * 10 9 7 33 33 H 1.09002 * 109.81210 * 57.46016 * 10 9 7 34 34 H 1.08997 * 110.57188 * 101.43510 * 11 10 9 35 35 H 1.09002 * 110.57474 * 224.15588 * 11 10 9 36 36 H 1.08997 * 109.41181 * 51.74633 * 16 14 9 37 37 H 1.08999 * 109.36728 * 291.90958 * 16 14 9 38 38 H 1.09000 * 109.62807 * 174.31053 * 17 16 14 39 39 H 1.08998 * 109.79527 * 53.81470 * 17 16 14 40 40 H 1.09002 * 109.46257 * 293.77230 * 18 17 16 41 41 H 1.09004 * 109.45196 * 173.82784 * 18 17 16 42 42 H 1.08000 * 120.85762 * 359.95497 * 23 22 20 43 43 H 1.07994 * 120.34582 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.45895 * 180.02562 * 25 24 23 45 45 H 1.09000 * 115.54780 * 211.42362 * 28 27 26 46 46 H 1.08998 * 117.49828 * 215.00405 * 29 28 27 47 47 H 1.08994 * 117.50292 * 0.03112 * 29 28 27 48 48 H 1.09004 * 117.50349 * 359.97438 * 30 28 27 49 49 H 1.09007 * 117.49800 * 144.97960 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1362 -2.5309 -0.0006 11 6 -0.4601 -4.0351 -0.0772 12 6 0.8639 -4.6697 -0.5605 13 1 0.8917 -4.6371 -1.6497 14 6 1.9359 -3.7326 -0.0005 15 1 2.8326 -3.7461 -0.6202 16 6 2.2781 -4.0960 1.4450 17 6 2.7248 -5.5568 1.5199 18 6 1.5324 -6.4479 1.1641 19 7 0.9839 -6.0384 -0.1231 20 6 0.5650 -7.0051 -0.9636 21 8 0.1974 -6.7173 -2.0859 22 6 0.5524 -8.4155 -0.5204 23 6 0.0122 -8.7663 0.7228 24 6 0.0242 -10.1001 1.0902 25 6 0.5639 -11.0357 0.2256 26 7 1.0610 -10.6767 -0.9425 27 6 1.0772 -9.4196 -1.3347 28 6 1.6622 -9.0632 -2.6770 29 6 2.2796 -10.1947 -3.5014 30 6 0.9411 -9.5828 -3.9223 31 1 -0.4850 0.8400 0.0004 32 1 -0.5485 -2.1106 0.9167 33 1 -0.5576 -2.0179 -0.8651 34 1 -0.7333 -4.4187 0.9058 35 1 -1.2600 -4.2187 -0.7946 36 1 1.3982 -3.9534 2.0724 37 1 3.0834 -3.4522 1.7986 38 1 3.0636 -5.7847 2.5305 39 1 3.5362 -5.7314 0.8134 40 1 0.7654 -6.3523 1.9327 41 1 1.8598 -7.4860 1.1054 42 1 -0.4029 -8.0150 1.3783 43 1 -0.3841 -10.4078 2.0414 44 1 0.5742 -12.0776 0.5095 45 1 2.1310 -8.0812 -2.7398 46 1 3.1544 -9.9571 -4.1065 47 1 2.2621 -11.1969 -3.0731 48 1 0.0437 -10.1827 -3.7708 49 1 0.9351 -8.9424 -4.8044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567740.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:38 Heat of formation + Delta-G solvation = 64.640385 kcal Electronic energy + Delta-G solvation = -30757.974502 eV Core-core repulsion = 26879.698269 eV Total energy + Delta-G solvation = -3878.276233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.24028 -39.84057 -37.82724 -36.99291 -35.45080 -33.05757 -32.61652 -32.04349 -31.34178 -29.01531 -28.38059 -25.48917 -24.84783 -24.38154 -23.81725 -22.37193 -22.05283 -21.03839 -20.62826 -20.00480 -18.33586 -17.44590 -17.24805 -16.93762 -16.35893 -16.08387 -15.36336 -14.93438 -14.74621 -14.47591 -14.37446 -14.16269 -13.85017 -13.82469 -13.62917 -13.40338 -12.94218 -12.90805 -12.45788 -12.12319 -12.02236 -11.79176 -11.56039 -11.44279 -11.12863 -10.97549 -10.92645 -10.78518 -10.67700 -10.59674 -10.52932 -10.19958 -10.13271 -10.02144 -9.88845 -9.66229 -9.61732 -9.44203 -9.03368 -8.61423 -8.35246 -6.88610 -5.72793 -3.07706 0.55926 0.91999 2.70765 3.05517 3.39372 3.40010 3.44050 3.45183 3.88714 3.95467 4.27503 4.45743 4.47491 4.52568 4.76248 4.88550 4.90282 5.00350 5.03060 5.07943 5.11942 5.27741 5.36711 5.38304 5.42670 5.52802 5.59509 5.61648 5.65430 5.74649 5.78700 5.83015 5.85943 5.95804 6.04280 6.05777 6.13287 6.19254 6.27210 6.31760 6.35572 6.53191 6.54956 6.71993 6.94032 7.05190 7.44805 7.54644 7.61556 7.67631 7.81308 8.21088 8.26049 9.19213 9.78947 10.43686 11.37967 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.002960 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.011830 B = 9458.307780 C = 9949.935241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.135 3.865 13 H 0.095 0.905 14 C 0.162 3.838 15 H 0.055 0.945 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.108 3.892 19 N -0.580 5.580 20 C 0.554 3.446 21 O -0.521 6.521 22 C -0.168 4.168 23 C -0.042 4.042 24 C -0.185 4.185 25 C 0.119 3.881 26 N -0.485 5.485 27 C 0.209 3.791 28 C -0.115 4.115 29 C -0.162 4.162 30 C -0.147 4.147 31 H 0.253 0.747 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.160 0.840 45 H 0.122 0.878 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -22.459 2.656 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.031 3.969 13 H 0.113 0.887 14 C 0.053 3.947 15 H 0.073 0.927 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.015 4.015 19 N -0.311 5.311 20 C 0.340 3.660 21 O -0.397 6.397 22 C -0.173 4.173 23 C -0.068 4.068 24 C -0.205 4.205 25 C -0.039 4.039 26 N -0.194 5.194 27 C 0.071 3.929 28 C -0.134 4.134 29 C -0.199 4.199 30 C -0.185 4.185 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.177 0.823 45 H 0.139 0.861 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.111 0.889 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.842 -22.614 1.518 22.740 hybrid contribution -0.060 1.601 0.971 1.873 sum 1.782 -21.014 2.489 21.235 Atomic orbital electron populations 1.69959 1.04879 1.25207 1.56683 1.24803 0.95701 0.97644 1.02060 0.86197 0.78452 0.83183 0.77894 1.21124 1.21612 1.21194 1.18967 0.90394 0.82130 1.44214 0.90448 1.44492 1.01486 0.99217 1.86744 1.21054 0.84295 0.87896 1.01285 1.23099 0.96449 0.99513 0.99959 1.21195 0.96729 0.78652 1.00300 0.88683 1.20832 0.93970 0.86141 0.93710 0.92733 1.22131 1.01536 0.93326 1.00089 1.21846 0.96944 0.96792 1.01442 1.21654 0.96323 0.98649 0.84895 1.47018 1.60875 1.06274 1.16936 1.18208 0.78318 0.84489 0.84995 1.90799 1.47095 1.82788 1.19054 1.20746 1.04795 0.95290 0.96474 1.21852 0.94043 0.97053 0.93834 1.22074 1.02915 0.93467 1.02063 1.22903 0.91927 1.00232 0.88792 1.67436 1.16847 1.18398 1.16687 1.20394 0.91519 0.87263 0.93726 1.20886 1.05314 0.99552 0.87634 1.22999 0.96599 0.98166 1.02177 1.22868 0.96221 1.02739 0.96630 0.93655 0.94155 0.92919 0.92656 0.91941 0.91934 0.91762 0.91068 0.91658 0.91889 0.90515 0.83991 0.84135 0.82328 0.86053 0.88636 0.87500 0.88913 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.29 55.49 0.57 -26.16 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.21 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.72 2.93 -163.88 -0.48 -15.20 16 10 C 0.18 4.34 5.39 -3.28 -0.02 4.32 16 11 C -0.15 -2.94 6.46 -25.36 -0.16 -3.10 16 12 C 0.14 2.51 2.81 -68.34 -0.19 2.32 16 13 H 0.10 1.97 7.01 -51.93 -0.36 1.60 16 14 C 0.16 3.24 3.27 -67.33 -0.22 3.02 16 15 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 16 C -0.13 -2.22 5.31 -26.80 -0.14 -2.37 16 17 C -0.13 -1.68 6.10 -26.74 -0.16 -1.84 16 18 C 0.11 1.30 4.85 -4.40 -0.02 1.28 16 19 N -0.58 -8.80 2.79 -168.47 -0.47 -9.28 16 20 C 0.55 8.66 6.44 -12.33 -0.08 8.59 16 21 O -0.52 -9.82 14.86 5.32 0.08 -9.74 16 22 C -0.17 -2.16 4.63 -104.82 -0.49 -2.65 16 23 C -0.04 -0.42 7.83 -38.87 -0.30 -0.72 16 24 C -0.19 -1.46 10.10 -39.50 -0.40 -1.85 16 25 C 0.12 1.03 11.17 -17.47 -0.20 0.83 16 26 N -0.49 -5.56 9.28 -9.14 -0.08 -5.65 16 27 C 0.21 2.68 6.49 -82.17 -0.53 2.15 16 28 C -0.12 -1.46 4.78 -91.77 -0.44 -1.90 16 29 C -0.16 -1.69 10.03 -26.69 -0.27 -1.95 16 30 C -0.15 -1.68 10.24 -26.69 -0.27 -1.95 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 33 H 0.05 1.43 7.25 -51.93 -0.38 1.05 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.13 8.02 -51.93 -0.42 0.72 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.69 7.55 -51.93 -0.39 0.30 16 41 H 0.08 0.81 5.64 -51.93 -0.29 0.52 16 42 H 0.14 1.24 6.84 -52.49 -0.36 0.88 16 43 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 1.70 7.18 -51.93 -0.37 1.32 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.11 1.10 7.54 -51.93 -0.39 0.71 16 48 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -31.64 382.84 -11.34 -42.98 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.56 Total: 2.87 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.15 Total: -2.46 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.47 Total: -56.28 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.64 -11.34 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567740.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.623 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds