Wall clock time and date at job start Wed Apr 1 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00287 * 2 1 4 4 H 1.48498 * 109.46764 * 239.99818 * 3 2 1 5 5 H 1.48497 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 119.99840 * 3 2 1 7 7 C 1.38814 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00446 * 0.02562 * 7 2 1 10 10 C 1.47113 * 125.76423 * 359.97438 * 9 7 2 11 11 C 1.54570 * 107.25719 * 182.59676 * 10 9 7 12 12 C 1.53907 * 102.54576 * 21.71153 * 11 10 9 13 13 H 1.08996 * 110.55164 * 80.60150 * 12 11 10 14 14 C 1.48213 * 125.76827 * 179.97438 * 9 7 2 15 15 H 1.08996 * 111.52481 * 32.97479 * 14 9 7 16 16 C 1.53010 * 107.11118 * 270.86051 * 14 9 7 17 17 C 1.52733 * 110.80249 * 191.93517 * 16 14 9 18 18 C 1.53468 * 108.43870 * 63.77165 * 17 16 14 19 19 N 1.45119 * 111.89213 * 203.54064 * 12 11 10 20 20 C 1.34775 * 119.57758 * 248.65721 * 19 12 11 21 21 O 1.21556 * 119.99780 * 3.92270 * 20 19 12 22 22 C 1.47848 * 120.00246 * 183.91671 * 20 19 12 23 23 C 1.40022 * 120.55890 * 304.81456 * 22 20 19 24 24 C 1.38353 * 118.28971 * 180.24744 * 23 22 20 25 25 C 1.38351 * 119.30032 * 359.74134 * 24 23 22 26 26 N 1.31935 * 121.08168 * 0.03100 * 25 24 23 27 27 C 1.31689 * 121.87749 * 359.97112 * 26 25 24 28 28 C 1.50698 * 119.71612 * 179.97438 * 27 26 25 29 29 C 1.52992 * 117.50144 * 55.03907 * 28 27 26 30 30 C 1.52996 * 117.49881 * 346.41386 * 28 27 26 31 31 H 0.97005 * 120.00059 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88660 * 302.01115 * 10 9 7 33 33 H 1.09001 * 109.88738 * 63.02364 * 10 9 7 34 34 H 1.08997 * 110.81213 * 139.90886 * 11 10 9 35 35 H 1.08999 * 110.80789 * 263.22912 * 11 10 9 36 36 H 1.09000 * 109.20688 * 71.59978 * 16 14 9 37 37 H 1.09001 * 109.21728 * 312.28098 * 16 14 9 38 38 H 1.08995 * 109.64796 * 304.08488 * 17 16 14 39 39 H 1.09001 * 109.81552 * 183.55315 * 17 16 14 40 40 H 1.08995 * 109.83243 * 182.38733 * 18 17 16 41 41 H 1.09001 * 109.88367 * 61.46967 * 18 17 16 42 42 H 1.08002 * 120.85878 * 359.97438 * 23 22 20 43 43 H 1.07995 * 120.35424 * 179.77077 * 24 23 22 44 44 H 1.08000 * 119.46242 * 180.02562 * 25 24 23 45 45 H 1.09001 * 115.55889 * 200.73232 * 28 27 26 46 46 H 1.08995 * 117.50192 * 145.02720 * 29 28 27 47 47 H 1.09005 * 117.49903 * 359.97438 * 29 28 27 48 48 H 1.09000 * 117.49935 * 0.02562 * 30 28 27 49 49 H 1.09006 * 117.52203 * 214.97408 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1382 -2.5359 0.0005 11 6 -0.4463 -4.0491 0.0674 12 6 0.8522 -4.6290 0.6558 13 1 0.8711 -4.5037 1.7384 14 6 1.9338 -3.7397 0.0005 15 1 2.8736 -3.7552 0.5524 16 6 2.1386 -4.1412 -1.4617 17 6 2.4843 -5.6247 -1.5735 18 6 1.2875 -6.4415 -1.0678 19 7 1.0221 -6.0296 0.3159 20 6 0.9299 -6.9646 1.2822 21 8 0.6353 -6.6398 2.4159 22 6 1.1868 -8.3852 0.9632 23 6 0.4754 -9.0252 -0.0590 24 6 0.7499 -10.3570 -0.3143 25 6 1.7129 -11.0061 0.4376 26 7 2.3710 -10.3760 1.3919 27 6 2.1455 -9.1093 1.6725 28 6 2.9253 -8.4378 2.7734 29 6 4.4521 -8.4852 2.6880 30 6 3.7174 -9.3349 3.7266 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5617 -2.0326 0.8697 33 1 -0.5538 -2.1105 -0.9129 34 1 -1.2903 -4.2436 0.7292 35 1 -0.6366 -4.4499 -0.9282 36 1 2.9510 -3.5507 -1.8853 37 1 1.2235 -3.9431 -2.0197 38 1 3.3611 -5.8436 -0.9640 39 1 2.6883 -5.8791 -2.6136 40 1 1.5261 -7.5045 -1.0981 41 1 0.4135 -6.2410 -1.6875 42 1 -0.2715 -8.4942 -0.6305 43 1 0.2183 -10.8843 -1.0926 44 1 1.9296 -12.0455 0.2402 45 1 2.4722 -7.5378 3.1892 46 1 5.0036 -7.6165 3.0475 47 1 4.8927 -9.0024 1.8356 48 1 3.6748 -10.4108 3.5572 49 1 3.7857 -9.0255 4.7696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:43 Heat of formation + Delta-G solvation = 65.466791 kcal Electronic energy + Delta-G solvation = -30861.634063 eV Core-core repulsion = 26983.393667 eV Total energy + Delta-G solvation = -3878.240397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19926 -39.81081 -37.89098 -37.01443 -35.34552 -33.03181 -32.44255 -32.03880 -31.34848 -29.03508 -28.24598 -25.54804 -24.87268 -24.28424 -23.82242 -22.41645 -22.07286 -21.01101 -20.59312 -19.99899 -18.34476 -17.46636 -17.27056 -16.92251 -16.39665 -16.06785 -15.34009 -14.83582 -14.76647 -14.57089 -14.27533 -14.09206 -14.03478 -13.75647 -13.54241 -13.37801 -12.92699 -12.87623 -12.47866 -12.12564 -12.00502 -11.78071 -11.57775 -11.41486 -11.10496 -11.02157 -10.95812 -10.80776 -10.65856 -10.62703 -10.56010 -10.21098 -10.12610 -10.00714 -9.88971 -9.65153 -9.64623 -9.45128 -9.00473 -8.63655 -8.34352 -6.88191 -5.72547 -3.06855 0.58894 0.90537 2.65180 3.03734 3.34795 3.40053 3.44564 3.45561 3.87776 4.00522 4.25779 4.41348 4.47468 4.52160 4.77310 4.88610 4.90540 4.98422 5.04312 5.10507 5.12477 5.27605 5.34221 5.39847 5.45683 5.54697 5.57784 5.60160 5.65862 5.73556 5.77536 5.81117 5.82791 5.96712 6.06580 6.07430 6.13500 6.17891 6.28076 6.30974 6.34641 6.47674 6.55630 6.70264 6.92584 7.02103 7.48226 7.53446 7.59239 7.67857 7.80495 8.19216 8.24033 9.18848 9.78534 10.44228 11.38583 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.003100 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.343375 B = 9031.514899 C = 9573.188654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.132 3.868 13 H 0.103 0.897 14 C 0.157 3.843 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.100 3.900 19 N -0.582 5.582 20 C 0.561 3.439 21 O -0.530 6.530 22 C -0.165 4.165 23 C -0.044 4.044 24 C -0.185 4.185 25 C 0.118 3.882 26 N -0.485 5.485 27 C 0.209 3.791 28 C -0.132 4.132 29 C -0.157 4.157 30 C -0.154 4.154 31 H 0.253 0.747 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.136 0.864 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -22.220 -2.408 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.028 3.972 13 H 0.120 0.880 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.023 4.023 19 N -0.312 5.312 20 C 0.348 3.652 21 O -0.408 6.408 22 C -0.170 4.170 23 C -0.070 4.070 24 C -0.205 4.205 25 C -0.040 4.040 26 N -0.193 5.193 27 C 0.072 3.928 28 C -0.151 4.151 29 C -0.194 4.194 30 C -0.191 4.191 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.177 0.823 45 H 0.154 0.846 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.124 0.876 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.600 -22.184 -1.328 22.514 hybrid contribution -0.393 1.330 -0.830 1.616 sum 3.207 -20.854 -2.159 21.209 Atomic orbital electron populations 1.69942 1.04869 1.25199 1.56817 1.24792 0.95698 0.97610 1.02144 0.86204 0.78459 0.83221 0.77889 1.21208 1.21624 1.21144 1.18984 0.90386 0.82194 1.44056 0.90487 1.44703 1.01466 0.99280 1.86781 1.21175 0.84320 0.87607 1.01311 1.23017 0.96403 0.99870 0.99754 1.21799 0.96726 0.77522 1.01199 0.87952 1.21431 0.94467 0.86116 0.93186 0.92157 1.22125 1.01986 0.93001 0.99869 1.21916 0.97336 0.97145 1.00693 1.22044 0.98784 0.99204 0.82238 1.47573 1.69070 1.06776 1.07808 1.18116 0.77391 0.84647 0.85043 1.90780 1.47718 1.81511 1.20756 1.20710 1.00955 0.95926 0.99421 1.21754 0.96814 0.94710 0.93742 1.22056 1.00718 0.95148 1.02531 1.22890 0.91087 0.99985 0.89998 1.67427 1.26364 1.08849 1.16690 1.20343 0.91184 0.88638 0.92682 1.21268 0.93249 1.02334 0.98212 1.22948 0.91877 1.02653 1.01972 1.22923 1.02260 0.98505 0.95412 0.93669 0.93009 0.93988 0.91968 0.92272 0.92067 0.91825 0.91801 0.91324 0.90003 0.91040 0.84075 0.84131 0.82338 0.84642 0.88161 0.88632 0.87614 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.33 55.49 0.57 -26.12 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.20 10.29 -15.06 -0.15 -6.35 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.71 2.91 -161.96 -0.47 -15.19 16 10 C 0.18 4.31 5.19 -2.88 -0.01 4.29 16 11 C -0.15 -2.85 6.06 -25.43 -0.15 -3.01 16 12 C 0.13 2.42 3.07 -67.36 -0.21 2.22 16 13 H 0.10 2.14 6.99 -51.93 -0.36 1.77 16 14 C 0.16 3.12 3.62 -66.14 -0.24 2.88 16 15 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.13 -2.21 5.10 -26.86 -0.14 -2.34 16 17 C -0.13 -1.70 6.11 -26.63 -0.16 -1.86 16 18 C 0.10 1.21 5.27 -3.64 -0.02 1.19 16 19 N -0.58 -8.82 2.74 -166.20 -0.45 -9.28 16 20 C 0.56 8.85 6.50 -12.33 -0.08 8.77 16 21 O -0.53 -10.15 14.68 5.32 0.08 -10.07 16 22 C -0.16 -2.14 4.80 -104.82 -0.50 -2.64 16 23 C -0.04 -0.43 7.57 -38.87 -0.29 -0.73 16 24 C -0.18 -1.44 10.10 -39.50 -0.40 -1.84 16 25 C 0.12 1.02 11.17 -17.47 -0.20 0.83 16 26 N -0.48 -5.61 9.37 -9.14 -0.09 -5.70 16 27 C 0.21 2.72 6.47 -82.18 -0.53 2.19 16 28 C -0.13 -1.71 5.57 -91.78 -0.51 -2.23 16 29 C -0.16 -1.71 10.22 -26.74 -0.27 -1.98 16 30 C -0.15 -1.65 10.02 -26.73 -0.27 -1.92 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 33 H 0.04 1.10 7.59 -51.93 -0.39 0.70 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.02 6.83 -51.93 -0.35 0.66 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.84 4.75 -51.93 -0.25 0.59 16 41 H 0.07 0.81 7.53 -51.93 -0.39 0.41 16 42 H 0.14 1.17 7.49 -52.49 -0.39 0.77 16 43 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.14 2.05 6.03 -51.93 -0.31 1.74 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.11 1.12 7.62 -51.93 -0.40 0.73 16 49 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -31.72 380.15 -11.27 -42.99 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.37 Total: 3.53 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.24 Total: -2.79 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.44 Total: -56.28 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.72 -11.27 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.452 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds