Wall clock time and date at job start Wed Apr 1 2020 00:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00206 * 2 1 4 4 H 1.48502 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47310 * 300.00604 * 3 2 1 6 6 H 1.48500 * 109.46803 * 60.00804 * 3 2 1 7 7 C 1.38818 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00023 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.48386 * 126.55825 * 359.97438 * 9 7 2 11 11 C 1.57545 * 107.17421 * 185.61996 * 10 9 7 12 12 C 1.53433 * 100.73394 * 22.36950 * 11 10 9 13 13 H 1.09002 * 111.14442 * 78.48959 * 12 11 10 14 14 C 1.45014 * 126.56404 * 179.97438 * 9 7 2 15 15 H 1.09006 * 108.26126 * 263.90440 * 14 9 7 16 16 C 1.51079 * 118.61269 * 29.12746 * 14 9 7 17 17 C 1.53867 * 107.35058 * 183.50648 * 16 14 9 18 18 C 1.52723 * 111.52018 * 303.07203 * 17 16 14 19 19 N 1.45714 * 116.38002 * 206.95525 * 12 11 10 20 20 C 1.34777 * 122.22567 * 350.95491 * 19 12 11 21 21 O 1.21550 * 119.99840 * 354.56709 * 20 19 12 22 22 C 1.47846 * 120.00065 * 174.57927 * 20 19 12 23 23 C 1.40019 * 120.55895 * 53.95323 * 22 20 19 24 24 C 1.38360 * 118.28729 * 179.97438 * 23 22 20 25 25 C 1.38353 * 119.30269 * 359.97438 * 24 23 22 26 26 N 1.31929 * 121.08152 * 359.97438 * 25 24 23 27 27 C 1.31697 * 121.87758 * 359.76736 * 26 25 24 28 28 C 1.50699 * 119.72163 * 180.24869 * 27 26 25 29 29 C 1.53007 * 117.49425 * 2.39452 * 28 27 26 30 30 C 1.53003 * 117.49481 * 293.74023 * 28 27 26 31 31 H 0.97006 * 119.99394 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.96196 * 304.89872 * 10 9 7 33 33 H 1.09000 * 109.96226 * 66.11061 * 10 9 7 34 34 H 1.08993 * 110.98647 * 264.78061 * 11 10 9 35 35 H 1.09005 * 111.87121 * 140.33003 * 11 10 9 36 36 H 1.09001 * 109.87982 * 64.04370 * 16 14 9 37 37 H 1.09002 * 109.94318 * 303.00654 * 16 14 9 38 38 H 1.08993 * 109.07066 * 182.54615 * 17 16 14 39 39 H 1.09003 * 109.01436 * 63.55718 * 17 16 14 40 40 H 1.08997 * 109.15993 * 288.12886 * 18 17 16 41 41 H 1.09003 * 109.11320 * 168.91548 * 18 17 16 42 42 H 1.07992 * 120.86004 * 0.02562 * 23 22 20 43 43 H 1.07995 * 120.35013 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.46273 * 180.02562 * 25 24 23 45 45 H 1.08999 * 115.55530 * 148.06676 * 28 27 26 46 46 H 1.08996 * 117.49719 * 359.97438 * 29 28 27 47 47 H 1.08999 * 117.49557 * 145.02706 * 29 28 27 48 48 H 1.09004 * 117.49532 * 214.97826 * 30 28 27 49 49 H 1.09006 * 117.49708 * 359.96827 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1486 -2.5575 0.0005 11 6 -0.4396 -4.0989 0.1475 12 6 0.8717 -4.5778 0.7842 13 1 0.8965 -4.3520 1.8503 14 6 1.9023 -3.7186 -0.0016 15 1 1.9365 -4.0753 -1.0311 16 6 3.2535 -3.9219 0.6429 17 6 3.6529 -5.3907 0.4178 18 6 2.6022 -6.3487 0.9753 19 7 1.2447 -5.9639 0.5336 20 6 0.4079 -6.8371 -0.0611 21 8 -0.7331 -6.5064 -0.3184 22 6 0.8776 -8.1974 -0.4001 23 6 1.4529 -9.0165 0.5790 24 6 1.8758 -10.2812 0.2101 25 6 1.7178 -10.6923 -1.1014 26 7 1.1711 -9.8990 -2.0027 27 6 0.7486 -8.6890 -1.6995 28 6 0.1262 -7.8257 -2.7664 29 6 -0.0353 -8.4332 -4.1614 30 6 1.0268 -7.3595 -3.9121 31 1 -0.4849 0.8401 0.0004 32 1 -0.5846 -2.0181 0.8414 33 1 -0.5664 -2.1874 -0.9357 34 1 -0.5921 -4.5620 -0.8273 35 1 -1.2865 -4.2913 0.8062 36 1 3.1897 -3.7146 1.7111 37 1 3.9887 -3.2629 0.1809 38 1 4.6057 -5.5804 0.9119 39 1 3.7649 -5.5684 -0.6518 40 1 2.6429 -6.3298 2.0644 41 1 2.8192 -7.3585 0.6268 42 1 1.5630 -8.6704 1.5960 43 1 2.3238 -10.9408 0.9385 44 1 2.0466 -11.6791 -1.3921 45 1 -0.6480 -7.1394 -2.4236 46 1 0.3089 -9.4570 -4.3074 47 1 -0.9157 -8.1462 -4.7364 48 1 0.8447 -6.3665 -4.3232 49 1 2.0695 -7.6767 -3.8938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049567742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:46 Heat of formation + Delta-G solvation = 71.250774 kcal Electronic energy + Delta-G solvation = -31133.845740 eV Core-core repulsion = 27255.856156 eV Total energy + Delta-G solvation = -3877.989584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.11937 -39.77538 -37.66678 -36.93142 -35.44431 -33.01096 -32.63365 -31.96502 -31.29046 -28.89345 -28.19705 -25.50615 -24.79758 -24.47396 -23.62261 -22.31390 -21.55312 -21.19115 -20.72310 -19.80763 -19.17538 -17.22121 -17.09206 -16.45446 -16.39273 -15.62766 -15.39196 -15.16217 -14.67748 -14.56794 -14.31763 -14.21834 -13.83918 -13.81013 -13.44031 -13.33442 -12.96522 -12.75191 -12.43699 -12.28733 -11.89625 -11.77125 -11.62636 -11.50208 -11.16207 -10.88198 -10.86983 -10.73034 -10.57584 -10.49410 -10.43965 -10.10378 -10.04885 -9.96099 -9.84900 -9.79714 -9.62295 -9.12766 -8.93634 -8.61001 -8.27810 -6.83655 -5.70778 -3.05012 0.62187 0.93417 2.72834 3.05882 3.39589 3.41349 3.44770 3.47461 3.89209 4.04246 4.30385 4.46745 4.49288 4.53382 4.79518 4.80939 4.95559 5.05287 5.05650 5.09254 5.13214 5.28337 5.34885 5.41261 5.44931 5.57373 5.61266 5.67293 5.74038 5.75708 5.81557 5.82546 5.88100 5.97372 6.04724 6.14442 6.18574 6.22680 6.26874 6.36497 6.38712 6.52107 6.69333 6.74792 6.87029 7.14212 7.55273 7.59822 7.65837 7.72406 7.83293 8.23744 8.30369 9.18786 9.82549 10.50631 11.41247 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003346 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.356976 B = 8365.510502 C = 8908.822527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.116 3.884 13 H 0.080 0.920 14 C 0.160 3.840 15 H 0.019 0.981 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.590 5.590 20 C 0.568 3.432 21 O -0.520 6.520 22 C -0.165 4.165 23 C -0.046 4.046 24 C -0.185 4.185 25 C 0.116 3.884 26 N -0.484 5.484 27 C 0.210 3.790 28 C -0.131 4.131 29 C -0.156 4.156 30 C -0.157 4.157 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -21.455 0.213 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.167 4.167 12 C 0.012 3.988 13 H 0.098 0.902 14 C 0.051 3.949 15 H 0.037 0.963 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.018 4.018 19 N -0.322 5.322 20 C 0.355 3.645 21 O -0.397 6.397 22 C -0.171 4.171 23 C -0.073 4.073 24 C -0.205 4.205 25 C -0.041 4.041 26 N -0.192 5.192 27 C 0.072 3.928 28 C -0.150 4.150 29 C -0.193 4.193 30 C -0.195 4.195 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.176 0.824 45 H 0.156 0.844 46 H 0.124 0.876 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.953 -21.323 -0.788 21.905 hybrid contribution 0.716 1.098 1.123 1.726 sum 5.670 -20.225 0.335 21.008 Atomic orbital electron populations 1.69952 1.04878 1.24957 1.56850 1.24805 0.95669 0.97620 1.02266 0.86079 0.78689 0.83951 0.77243 1.20544 1.21777 1.21787 1.19027 0.90343 0.82149 1.43856 0.90293 1.44080 1.01789 0.99346 1.86562 1.22102 0.83592 0.88332 1.01096 1.23278 0.94418 0.97969 1.01070 1.22493 0.98778 0.78038 0.99484 0.90174 1.20766 0.91326 0.87173 0.95660 0.96344 1.21431 0.98556 0.94085 1.01315 1.21896 0.97570 0.95748 1.01579 1.21900 0.81793 0.98869 0.99280 1.47961 1.14402 1.11225 1.58617 1.17933 0.85145 0.83705 0.77734 1.90784 1.17963 1.77322 1.53655 1.20809 1.03856 0.96774 0.95621 1.21737 0.92898 0.93327 0.99310 1.22051 1.03265 0.96935 0.98265 1.22890 0.93192 0.98778 0.89238 1.67448 1.10857 1.04054 1.36862 1.20380 0.91348 0.89957 0.91066 1.21252 1.03672 1.02060 0.87978 1.22931 1.00761 0.99136 0.96444 1.22962 0.96438 0.99840 1.00262 0.93757 0.92521 0.94199 0.90449 0.91747 0.91712 0.91382 0.90907 0.91852 0.91327 0.90249 0.84196 0.84219 0.82386 0.84401 0.87560 0.88538 0.87976 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.46 55.49 0.58 -26.41 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.14 9.92 -15.06 -0.15 -6.29 16 8 H 0.08 2.07 7.26 -52.49 -0.38 1.68 16 9 N -0.59 -14.95 3.35 -161.94 -0.54 -15.49 16 10 C 0.17 4.32 5.53 -0.52 0.00 4.31 16 11 C -0.13 -2.68 5.09 -24.03 -0.12 -2.80 16 12 C 0.12 2.16 3.26 -66.80 -0.22 1.94 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 14 C 0.16 3.27 2.59 -68.37 -0.18 3.09 16 15 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 16 C -0.12 -1.93 5.41 -27.25 -0.15 -2.08 16 17 C -0.13 -1.62 5.94 -26.42 -0.16 -1.78 16 18 C 0.10 1.23 5.59 -3.44 -0.02 1.21 16 19 N -0.59 -9.09 2.91 -165.10 -0.48 -9.57 16 20 C 0.57 9.11 6.59 -12.33 -0.08 9.02 16 21 O -0.52 -9.89 12.21 5.32 0.06 -9.82 16 22 C -0.17 -2.20 4.99 -104.82 -0.52 -2.72 16 23 C -0.05 -0.46 7.62 -38.87 -0.30 -0.76 16 24 C -0.19 -1.47 10.10 -39.49 -0.40 -1.87 16 25 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 26 N -0.48 -5.85 9.28 -9.14 -0.08 -5.93 16 27 C 0.21 2.85 6.50 -82.17 -0.53 2.32 16 28 C -0.13 -1.81 5.40 -91.77 -0.50 -2.31 16 29 C -0.16 -1.80 10.03 -26.69 -0.27 -2.06 16 30 C -0.16 -1.94 10.24 -26.69 -0.27 -2.21 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 33 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 34 H 0.08 1.67 6.38 -51.93 -0.33 1.34 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 37 H 0.07 1.20 7.67 -51.93 -0.40 0.80 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.80 4.87 -51.93 -0.25 0.54 16 42 H 0.14 1.13 7.41 -52.49 -0.39 0.74 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.14 2.20 6.24 -51.93 -0.32 1.87 16 46 H 0.11 1.20 7.54 -51.93 -0.39 0.81 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -32.19 378.63 -11.38 -43.58 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.45 Total: 3.45 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.15 Total: -2.43 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.53 Total: -57.40 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.19 -11.38 -43.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049567742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.828 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds