Wall clock time and date at job start Wed Apr 1 2020 00:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00539 * 2 1 4 4 H 1.48504 * 109.46626 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47105 * 119.99407 * 3 2 1 6 6 H 1.48496 * 109.47213 * 239.99829 * 3 2 1 7 7 C 1.38813 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99987 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.46886 * 125.57869 * 0.02562 * 9 7 2 11 11 C 1.54062 * 107.70464 * 182.96430 * 10 9 7 12 12 C 1.54068 * 103.74349 * 17.13953 * 11 10 9 13 13 H 1.09003 * 109.16383 * 86.46070 * 12 11 10 14 14 C 1.47656 * 125.57832 * 179.71941 * 9 7 2 15 15 H 1.08991 * 110.57103 * 38.36358 * 14 9 7 16 16 C 1.52923 * 107.99476 * 276.40694 * 14 9 7 17 17 C 1.52938 * 109.79917 * 188.17180 * 16 14 9 18 18 C 1.53054 * 108.49184 * 65.98980 * 17 16 14 19 19 N 1.44188 * 111.76476 * 207.40101 * 12 11 10 20 20 C 1.34777 * 117.75809 * 266.44648 * 19 12 11 21 21 O 1.21280 * 119.99959 * 354.76884 * 20 19 12 22 22 C 1.50702 * 119.99784 * 174.77431 * 20 19 12 23 23 H 1.09000 * 110.26291 * 332.21995 * 22 20 19 24 24 C 1.54334 * 110.29300 * 210.16762 * 22 20 19 25 25 C 1.54373 * 102.38856 * 214.72491 * 24 22 20 26 26 C 1.51224 * 105.11670 * 26.29685 * 25 24 22 27 27 C 1.38747 * 130.69202 * 162.85405 * 26 25 24 28 28 C 1.38990 * 118.44566 * 179.78544 * 27 26 25 29 29 C 1.38227 * 119.03407 * 0.21334 * 28 27 26 30 30 N 1.31686 * 120.79975 * 359.84430 * 29 28 27 31 31 C 1.32292 * 122.03402 * 0.02562 * 30 29 28 32 32 H 0.97004 * 119.99738 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.81448 * 302.51629 * 10 9 7 34 34 H 1.08995 * 109.80608 * 63.41981 * 10 9 7 35 35 H 1.08997 * 110.56596 * 135.69805 * 11 10 9 36 36 H 1.08994 * 110.57171 * 258.57115 * 11 10 9 37 37 H 1.09002 * 109.41767 * 308.27082 * 16 14 9 38 38 H 1.08996 * 109.41506 * 68.06853 * 16 14 9 39 39 H 1.09000 * 109.63223 * 185.69427 * 17 16 14 40 40 H 1.09003 * 109.62884 * 306.09071 * 17 16 14 41 41 H 1.08994 * 109.45993 * 66.22027 * 18 17 16 42 42 H 1.08998 * 109.45570 * 186.18450 * 18 17 16 43 43 H 1.09002 * 110.82531 * 332.95152 * 24 22 20 44 44 H 1.09004 * 110.82233 * 96.30384 * 24 22 20 45 45 H 1.08997 * 110.31576 * 145.21035 * 25 24 22 46 46 H 1.09000 * 110.31067 * 267.29017 * 25 24 22 47 47 H 1.08004 * 120.71999 * 0.02562 * 27 26 25 48 48 H 1.08001 * 120.45644 * 180.02562 * 28 27 26 49 49 H 1.08004 * 119.60024 * 179.82592 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6962 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1365 -2.5308 -0.0005 11 6 -0.4604 -4.0351 0.0758 12 6 0.8582 -4.6695 0.5581 13 1 0.8897 -4.6448 1.6474 14 6 1.9358 -3.7326 -0.0048 15 1 2.8251 -3.7519 0.6251 16 6 2.2734 -4.0924 -1.4523 17 6 2.7195 -5.5531 -1.5324 18 6 1.5281 -6.4449 -1.1751 19 7 0.9905 -6.0335 0.1099 20 6 0.5699 -7.0100 0.9383 21 8 0.1878 -6.7343 2.0558 22 6 0.5747 -8.4443 0.4759 23 1 0.4593 -8.4922 -0.6069 24 6 -0.5548 -9.2343 1.1701 25 6 0.0782 -10.6311 1.3470 26 6 1.5693 -10.3845 1.3998 27 6 2.6043 -11.1918 1.8494 28 6 3.9039 -10.7045 1.7756 29 6 4.1175 -9.4383 1.2640 30 7 3.1094 -8.7002 0.8479 31 6 1.8586 -9.1280 0.8987 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5584 -2.0178 0.8636 34 1 -0.5479 -2.1105 -0.9181 35 1 -1.2591 -4.2188 0.7944 36 1 -0.7328 -4.4186 -0.9074 37 1 1.3916 -3.9482 -2.0766 38 1 3.0772 -3.4479 -1.8078 39 1 3.0552 -5.7785 -2.5446 40 1 3.5342 -5.7262 -0.8293 41 1 0.7587 -6.3470 -1.9409 42 1 1.8554 -7.4831 -1.1200 43 1 -0.7981 -8.7938 2.1371 44 1 -1.4396 -9.2840 0.5353 45 1 -0.2633 -11.0864 2.2765 46 1 -0.1714 -11.2696 0.4996 47 1 2.4041 -12.1772 2.2436 48 1 4.7341 -11.3056 2.1159 49 1 5.1234 -9.0494 1.2051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049680571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:04 Heat of formation + Delta-G solvation = 36.018387 kcal Electronic energy + Delta-G solvation = -30893.562475 eV Core-core repulsion = 27014.045100 eV Total energy + Delta-G solvation = -3879.517375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34509 -40.01337 -37.99583 -36.09778 -35.34305 -32.97238 -32.47769 -32.14643 -29.68711 -29.25930 -28.56198 -27.88114 -24.58484 -24.30121 -23.74556 -22.52577 -21.90150 -21.62659 -20.14145 -19.52816 -18.03341 -17.49092 -16.83134 -16.82472 -16.61870 -15.70354 -15.45637 -14.78464 -14.70417 -14.51668 -14.21496 -13.91370 -13.72219 -13.63878 -13.38278 -13.26586 -13.01380 -12.92165 -12.48014 -12.11969 -12.09200 -11.98261 -11.82610 -11.69007 -11.36954 -11.24961 -10.92953 -10.85346 -10.69270 -10.57332 -10.36506 -10.08065 -10.07522 -9.93898 -9.61706 -9.55444 -9.50367 -9.42233 -8.90484 -8.54893 -8.17688 -6.80666 -5.66261 -3.00532 0.82586 1.04276 2.73009 3.23654 3.43896 3.47990 3.49216 3.56800 3.70519 4.15992 4.41489 4.53034 4.60147 4.63270 4.67916 4.89739 4.95136 5.07615 5.12591 5.19900 5.27245 5.32361 5.41057 5.48406 5.50847 5.54480 5.56822 5.65996 5.69036 5.72295 5.81593 5.87297 5.95716 5.96853 6.00044 6.14496 6.20992 6.32234 6.41945 6.44546 6.46595 6.63071 6.68350 6.85113 7.08834 7.19064 7.61876 7.63310 7.71047 7.78365 7.88113 8.30044 8.43006 9.26249 9.86110 10.51668 11.44643 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002958 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.315841 B = 9463.396717 C =10062.459623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.138 3.862 13 H 0.092 0.908 14 C 0.162 3.838 15 H 0.054 0.946 16 C -0.128 4.128 17 C -0.128 4.128 18 C 0.111 3.889 19 N -0.577 5.577 20 C 0.521 3.479 21 O -0.539 6.539 22 C -0.064 4.064 23 H 0.114 0.886 24 C -0.108 4.108 25 C -0.077 4.077 26 C -0.142 4.142 27 C -0.066 4.066 28 C -0.172 4.172 29 C 0.104 3.896 30 N -0.467 5.467 31 C 0.133 3.867 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -25.733 -1.295 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.033 3.967 13 H 0.110 0.890 14 C 0.054 3.946 15 H 0.072 0.928 16 C -0.169 4.169 17 C -0.166 4.166 18 C -0.012 4.012 19 N -0.307 5.307 20 C 0.307 3.693 21 O -0.416 6.416 22 C -0.086 4.086 23 H 0.132 0.868 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.144 4.144 27 C -0.092 4.092 28 C -0.192 4.192 29 C -0.053 4.053 30 N -0.175 5.175 31 C -0.006 4.006 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.823 -24.416 -1.046 24.601 hybrid contribution 0.495 0.064 0.150 0.521 sum 3.318 -24.351 -0.896 24.593 Atomic orbital electron populations 1.69966 1.04852 1.25080 1.56970 1.24794 0.95699 0.97589 1.02270 0.86200 0.78433 0.83266 0.77861 1.21655 1.21182 1.21234 1.18978 0.90389 0.82203 1.43826 0.90500 1.44511 1.01511 0.99326 1.86768 1.21043 0.84311 0.87939 1.01164 1.23003 0.96577 0.99512 0.99938 1.21180 0.96500 0.79057 0.99922 0.89005 1.20947 0.94057 0.85977 0.93666 0.92820 1.22084 1.01359 0.93650 0.99777 1.21783 0.97289 0.96331 1.01218 1.21418 0.96100 0.99025 0.84652 1.46865 1.60711 1.06149 1.16967 1.20186 0.77324 0.86579 0.85206 1.90666 1.47842 1.83346 1.19731 1.20953 0.91971 0.93190 1.02456 0.86812 1.22374 0.96069 0.93351 1.02845 1.20977 0.89445 0.97964 1.03041 1.21471 0.96997 0.96016 0.99915 1.21153 0.91655 0.99484 0.96919 1.22193 0.97398 0.97874 1.01741 1.22667 0.97696 0.90657 0.94276 1.66869 0.98900 1.36193 1.15536 1.21289 0.91504 0.92189 0.95575 0.93738 0.93002 0.94251 0.92042 0.92603 0.92101 0.91960 0.91516 0.91296 0.92445 0.90112 0.88547 0.89397 0.89946 0.89625 0.84911 0.84529 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 10.29 55.49 0.57 -26.81 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.32 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.38 2.93 -163.60 -0.48 -15.86 16 10 C 0.18 4.52 5.39 -3.28 -0.02 4.50 16 11 C -0.15 -3.08 6.43 -25.62 -0.16 -3.25 16 12 C 0.14 2.74 2.82 -68.35 -0.19 2.55 16 13 H 0.09 2.06 7.03 -51.93 -0.37 1.70 16 14 C 0.16 3.46 3.29 -67.08 -0.22 3.24 16 15 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.13 -2.36 5.31 -26.80 -0.14 -2.50 16 17 C -0.13 -1.83 6.10 -26.74 -0.16 -1.99 16 18 C 0.11 1.50 5.65 -4.69 -0.03 1.48 16 19 N -0.58 -9.53 2.78 -167.80 -0.47 -10.00 16 20 C 0.52 8.52 6.67 -10.98 -0.07 8.45 16 21 O -0.54 -10.74 15.02 5.56 0.08 -10.66 16 22 C -0.06 -0.76 2.28 -91.84 -0.21 -0.97 16 23 H 0.11 1.13 6.43 -51.93 -0.33 0.79 16 24 C -0.11 -1.06 6.53 -25.31 -0.17 -1.23 16 25 C -0.08 -0.60 6.77 -26.91 -0.18 -0.78 16 26 C -0.14 -1.43 6.16 -104.14 -0.64 -2.07 16 27 C -0.07 -0.56 10.19 -39.11 -0.40 -0.96 16 28 C -0.17 -1.41 10.13 -39.31 -0.40 -1.81 16 29 C 0.10 1.07 11.18 -17.62 -0.20 0.87 16 30 N -0.47 -6.13 10.04 -9.15 -0.09 -6.23 16 31 C 0.13 1.65 6.18 -81.98 -0.51 1.14 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.05 1.45 7.25 -51.93 -0.38 1.07 16 34 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.97 5.22 -51.93 -0.27 0.70 16 43 H 0.10 1.16 6.98 -51.93 -0.36 0.80 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 48 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 49 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -33.90 379.04 -11.21 -45.11 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.56 Total: 1.46 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.95 Total: -0.11 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.47 Total: -58.89 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.90 -11.21 -45.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049680571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.129 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds