Wall clock time and date at job start Wed Apr 1 2020 00:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47123 * 239.99979 * 3 2 1 5 5 H 1.48500 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47176 * 119.99952 * 3 2 1 7 7 C 1.38808 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00376 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.48389 * 126.55719 * 0.02562 * 9 7 2 11 11 C 1.55468 * 106.97461 * 185.50000 * 10 9 7 12 12 C 1.53433 * 101.67007 * 22.59965 * 11 10 9 13 13 H 1.09006 * 111.74684 * 78.22292 * 12 11 10 14 14 C 1.45026 * 126.56584 * 179.97438 * 9 7 2 15 15 H 1.08996 * 108.71335 * 264.13141 * 14 9 7 16 16 C 1.51082 * 118.75485 * 29.08115 * 14 9 7 17 17 C 1.53870 * 107.34417 * 183.59396 * 16 14 9 18 18 C 1.53493 * 111.78914 * 303.72758 * 17 16 14 19 19 N 1.45722 * 116.38098 * 207.25875 * 12 11 10 20 20 C 1.34772 * 122.23100 * 350.10145 * 19 12 11 21 21 O 1.21284 * 120.00090 * 359.97438 * 20 19 12 22 22 C 1.50704 * 120.00394 * 179.97438 * 20 19 12 23 23 H 1.09004 * 110.25708 * 57.94224 * 22 20 19 24 24 C 1.54332 * 110.29664 * 179.97438 * 22 20 19 25 25 C 1.54365 * 102.39053 * 145.37163 * 24 22 20 26 26 C 1.51226 * 105.12214 * 333.71897 * 25 24 22 27 27 C 1.38737 * 130.69541 * 197.08998 * 26 25 24 28 28 C 1.38581 * 118.55666 * 180.02562 * 27 26 25 29 29 C 1.38220 * 118.99174 * 359.97438 * 28 27 26 30 30 N 1.31694 * 120.80128 * 0.02562 * 29 28 27 31 31 C 1.32299 * 122.03023 * 0.02562 * 30 29 28 32 32 H 0.97003 * 120.00218 * 0.02562 * 1 2 3 33 33 H 1.08997 * 109.96283 * 304.88100 * 10 9 7 34 34 H 1.09003 * 109.96314 * 66.08455 * 10 9 7 35 35 H 1.08998 * 110.99076 * 264.50657 * 11 10 9 36 36 H 1.09001 * 110.98846 * 140.69301 * 11 10 9 37 37 H 1.09007 * 109.87979 * 303.05289 * 16 14 9 38 38 H 1.09001 * 109.88708 * 64.05403 * 16 14 9 39 39 H 1.09001 * 109.06850 * 63.59843 * 17 16 14 40 40 H 1.09001 * 109.06819 * 182.61235 * 17 16 14 41 41 H 1.09001 * 108.53791 * 287.67453 * 18 17 16 42 42 H 1.09006 * 109.76232 * 168.50529 * 18 17 16 43 43 H 1.08995 * 110.82343 * 27.14470 * 24 22 20 44 44 H 1.09002 * 110.98965 * 263.67229 * 24 22 20 45 45 H 1.09003 * 110.31434 * 214.81182 * 25 24 22 46 46 H 1.09004 * 110.31338 * 92.63364 * 25 24 22 47 47 H 1.07999 * 120.72569 * 0.04032 * 27 26 25 48 48 H 1.08005 * 120.50319 * 180.02562 * 28 27 26 49 49 H 1.07996 * 119.60428 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1485 -2.5576 -0.0005 11 6 -0.4304 -4.0798 0.1425 12 6 0.8707 -4.5773 0.7857 13 1 0.9023 -4.3596 1.8534 14 6 1.9025 -3.7187 0.0005 15 1 1.9447 -4.0815 -1.0264 16 6 3.2536 -3.9251 0.6443 17 6 3.6506 -5.3941 0.4166 18 6 2.5896 -6.3617 0.9589 19 7 1.2340 -5.9638 0.5229 20 6 0.3890 -6.8276 -0.0740 21 8 -0.7162 -6.4593 -0.4115 22 6 0.8174 -8.2510 -0.3222 23 1 1.0936 -8.7311 0.6166 24 6 -0.3163 -9.0386 -1.0124 25 6 0.4625 -9.9962 -1.9394 26 6 1.7719 -9.2941 -2.2216 27 6 2.7190 -9.5101 -3.2121 28 6 3.8469 -8.7053 -3.2369 29 6 3.9878 -7.7196 -2.2783 30 7 3.0681 -7.5430 -1.3524 31 6 1.9782 -8.2908 -1.2943 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5858 -2.0177 0.8393 34 1 -0.5650 -2.1879 -0.9376 35 1 -0.5852 -4.5415 -0.8327 36 1 -1.2831 -4.2591 0.7973 37 1 3.9890 -3.2664 0.1821 38 1 3.1908 -3.7182 1.7127 39 1 3.7631 -5.5709 -0.6531 40 1 4.6028 -5.5865 0.9111 41 1 2.6329 -6.3484 2.0480 42 1 2.7972 -7.3719 0.6058 43 1 -0.9542 -8.3715 -1.5922 44 1 -0.9035 -9.5971 -0.2836 45 1 -0.0881 -10.1567 -2.8664 46 1 0.6432 -10.9462 -1.4363 47 1 2.5803 -10.2883 -3.9480 48 1 4.6040 -8.8457 -3.9943 49 1 4.8631 -7.0870 -2.2881 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049680574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:08 Heat of formation + Delta-G solvation = 54.623171 kcal Electronic energy + Delta-G solvation = -31555.010997 eV Core-core repulsion = 27676.300386 eV Total energy + Delta-G solvation = -3878.710611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34432 -39.77537 -37.89479 -35.99711 -35.26328 -32.98930 -32.41773 -31.95230 -29.58648 -29.21383 -28.16533 -27.84459 -24.51664 -24.33377 -23.67591 -22.28958 -21.77589 -21.21126 -20.27636 -19.51114 -18.70289 -16.99559 -16.78972 -16.62810 -16.22226 -15.45182 -15.42821 -14.77811 -14.71502 -14.48730 -14.08223 -13.96519 -13.67860 -13.63225 -13.34874 -13.27268 -12.76131 -12.55381 -12.36824 -12.20088 -11.99999 -11.82048 -11.73472 -11.57927 -11.38935 -11.21635 -10.96640 -10.75591 -10.56078 -10.33049 -10.25306 -10.04743 -9.91100 -9.80020 -9.71191 -9.50032 -9.32572 -9.10959 -8.74500 -8.49159 -8.01511 -6.72647 -5.61495 -2.95035 0.86981 1.07608 2.84780 3.30053 3.45653 3.49589 3.51156 3.60764 3.77288 4.15108 4.46822 4.57684 4.63090 4.69179 4.73885 4.95391 5.01229 5.12582 5.19867 5.27916 5.35579 5.43788 5.50843 5.52962 5.57752 5.61768 5.69062 5.76985 5.77133 5.85633 5.92534 5.99124 6.00862 6.05636 6.08685 6.27281 6.30143 6.42010 6.47046 6.57557 6.70050 6.73283 6.89065 6.92891 7.05094 7.33931 7.67182 7.75000 7.79987 7.88028 7.94396 8.34450 8.54257 9.28429 9.92562 10.62045 11.50613 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.003534 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.527583 B = 7920.954233 C = 8676.787780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.173 3.827 11 C -0.128 4.128 12 C 0.116 3.884 13 H 0.077 0.923 14 C 0.162 3.838 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.120 4.120 18 C 0.120 3.880 19 N -0.585 5.585 20 C 0.526 3.474 21 O -0.534 6.534 22 C -0.061 4.061 23 H 0.115 0.885 24 C -0.104 4.104 25 C -0.079 4.079 26 C -0.143 4.143 27 C -0.066 4.066 28 C -0.171 4.171 29 C 0.103 3.897 30 N -0.459 5.459 31 C 0.124 3.876 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -24.147 -2.418 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.048 3.952 11 C -0.167 4.167 12 C 0.012 3.988 13 H 0.095 0.905 14 C 0.053 3.947 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.003 4.003 19 N -0.316 5.316 20 C 0.312 3.688 21 O -0.412 6.412 22 C -0.083 4.083 23 H 0.132 0.868 24 C -0.142 4.142 25 C -0.116 4.116 26 C -0.145 4.145 27 C -0.092 4.092 28 C -0.190 4.190 29 C -0.054 4.054 30 N -0.167 5.167 31 C -0.013 4.013 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.149 0.851 48 H 0.154 0.846 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.813 -23.032 -1.991 23.838 hybrid contribution 0.674 0.333 -0.644 0.989 sum 6.486 -22.699 -2.635 23.754 Atomic orbital electron populations 1.69943 1.04852 1.25010 1.57059 1.24786 0.95646 0.97522 1.02509 0.86242 0.78456 0.83512 0.77800 1.21297 1.21669 1.21244 1.18948 0.90284 0.82305 1.43597 0.90490 1.44100 1.01797 0.99460 1.86527 1.21727 0.83735 0.88840 1.00897 1.22937 0.94614 0.97837 1.01275 1.22392 0.98601 0.78882 0.98955 0.90466 1.20730 0.91518 0.86804 0.95640 0.96554 1.21458 0.98306 0.94989 1.00748 1.21965 0.96799 0.94165 1.02972 1.21902 0.81201 0.99938 0.97228 1.47860 1.14604 1.10964 1.58207 1.19968 0.84673 0.86390 0.77743 1.90688 1.21160 1.77652 1.51656 1.20927 0.93015 0.95710 0.98656 0.86771 1.22292 0.96032 0.97185 0.98680 1.21014 0.91761 0.98282 1.00582 1.21416 0.97790 0.98699 0.96549 1.21045 0.92678 0.98636 0.96809 1.22094 0.98745 0.97447 1.00762 1.22744 0.97042 0.95580 0.90035 1.67195 1.01351 1.24810 1.23380 1.21394 0.92917 0.91903 0.95122 0.93782 0.92672 0.94487 0.90161 0.92243 0.91934 0.92308 0.90353 0.92011 0.93384 0.88918 0.88578 0.89523 0.90058 0.89773 0.85072 0.84615 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.98 10.46 55.49 0.58 -27.40 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.35 9.93 -15.06 -0.15 -6.50 16 8 H 0.08 2.10 7.28 -52.49 -0.38 1.72 16 9 N -0.59 -15.87 3.35 -163.27 -0.55 -16.42 16 10 C 0.17 4.55 5.47 -1.69 -0.01 4.54 16 11 C -0.13 -2.87 5.01 -25.20 -0.13 -2.99 16 12 C 0.12 2.35 3.32 -66.79 -0.22 2.13 16 13 H 0.08 1.59 8.13 -51.93 -0.42 1.16 16 14 C 0.16 3.60 2.58 -68.35 -0.18 3.42 16 15 H 0.02 0.41 8.05 -51.93 -0.42 0.00 16 16 C -0.12 -2.16 5.43 -27.24 -0.15 -2.30 16 17 C -0.12 -1.74 5.64 -26.02 -0.15 -1.89 16 18 C 0.12 1.66 5.32 -3.04 -0.02 1.64 16 19 N -0.59 -9.87 2.91 -163.50 -0.48 -10.34 16 20 C 0.53 8.66 7.08 -10.99 -0.08 8.59 16 21 O -0.53 -10.44 12.32 5.55 0.07 -10.37 16 22 C -0.06 -0.73 2.38 -91.85 -0.22 -0.95 16 23 H 0.11 1.11 7.94 -51.93 -0.41 0.70 16 24 C -0.10 -1.04 6.35 -25.32 -0.16 -1.20 16 25 C -0.08 -0.63 6.77 -26.91 -0.18 -0.81 16 26 C -0.14 -1.43 6.16 -104.20 -0.64 -2.08 16 27 C -0.07 -0.57 10.17 -39.27 -0.40 -0.97 16 28 C -0.17 -1.44 10.12 -39.46 -0.40 -1.84 16 29 C 0.10 1.05 10.93 -17.62 -0.19 0.86 16 30 N -0.46 -5.71 5.33 -9.19 -0.05 -5.76 16 31 C 0.12 1.50 5.91 -82.04 -0.49 1.01 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.06 1.57 7.19 -51.93 -0.37 1.20 16 34 H 0.04 1.07 7.81 -51.93 -0.41 0.66 16 35 H 0.08 1.89 6.21 -51.93 -0.32 1.57 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 38 H 0.06 1.10 8.11 -51.93 -0.42 0.67 16 39 H 0.08 1.18 6.13 -51.93 -0.32 0.86 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.15 4.16 -51.93 -0.22 0.93 16 43 H 0.10 1.19 7.02 -51.93 -0.36 0.83 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 49 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -34.09 366.34 -11.17 -45.26 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.39 Total: 1.59 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.85 Total: 0.32 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.49 Total: -59.92 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.09 -11.17 -45.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049680574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.879 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds