Wall clock time and date at job start Wed Apr 1 2020 00:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48496 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47212 * 300.00486 * 3 2 1 6 6 H 1.48503 * 109.47098 * 60.00115 * 3 2 1 7 7 C 1.38811 * 120.00586 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00623 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99481 * 0.02562 * 7 2 1 10 10 C 1.48234 * 125.88215 * 0.23228 * 9 7 2 11 11 C 1.54575 * 107.17173 * 182.49690 * 10 9 7 12 12 C 1.54412 * 102.44595 * 21.67083 * 11 10 9 13 13 H 1.09003 * 110.72283 * 80.56581 * 12 11 10 14 14 C 1.48216 * 125.76479 * 180.02562 * 9 7 2 15 15 H 1.08995 * 111.53123 * 32.96452 * 14 9 7 16 16 C 1.53017 * 107.11026 * 270.85187 * 14 9 7 17 17 C 1.52731 * 110.80324 * 191.92986 * 16 14 9 18 18 C 1.53467 * 108.43814 * 63.77064 * 17 16 14 19 19 N 1.45121 * 111.60817 * 203.41594 * 12 11 10 20 20 C 1.34774 * 119.58214 * 248.65418 * 19 12 11 21 21 O 1.21280 * 119.99607 * 359.72225 * 20 19 12 22 22 C 1.50696 * 120.00224 * 179.72990 * 20 19 12 23 23 H 1.09005 * 110.72686 * 298.04013 * 22 20 19 24 24 C 1.54199 * 110.77836 * 174.48774 * 22 20 19 25 25 C 1.51214 * 105.20525 * 267.70585 * 24 22 20 26 26 C 1.38746 * 130.69625 * 162.96586 * 25 24 22 27 27 C 1.38570 * 118.56164 * 180.32033 * 26 25 24 28 28 C 1.38235 * 118.99160 * 359.97438 * 27 26 25 29 29 N 1.31686 * 120.79679 * 359.97438 * 28 27 26 30 30 C 1.32297 * 122.03428 * 359.97438 * 29 28 27 31 31 C 1.51476 * 130.14467 * 180.02562 * 30 29 28 32 32 H 0.97005 * 120.00553 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.92294 * 63.10876 * 10 9 7 34 34 H 1.09005 * 110.05666 * 301.95389 * 10 9 7 35 35 H 1.09002 * 110.80871 * 263.43076 * 11 10 9 36 36 H 1.08998 * 110.97874 * 139.98919 * 11 10 9 37 37 H 1.09007 * 109.20835 * 71.59061 * 16 14 9 38 38 H 1.09000 * 109.21696 * 312.27777 * 16 14 9 39 39 H 1.08998 * 109.64499 * 304.08669 * 17 16 14 40 40 H 1.08999 * 109.64532 * 183.45417 * 17 16 14 41 41 H 1.09004 * 109.82916 * 182.39540 * 18 17 16 42 42 H 1.09000 * 109.83439 * 61.44228 * 18 17 16 43 43 H 1.09003 * 109.95530 * 148.92481 * 24 22 20 44 44 H 1.08999 * 110.57941 * 26.80840 * 24 22 20 45 45 H 1.07997 * 120.71938 * 0.29209 * 26 25 24 46 46 H 1.08002 * 120.51126 * 179.97438 * 27 26 25 47 47 H 1.07997 * 119.60063 * 180.02562 * 28 27 26 48 48 H 1.09000 * 110.29465 * 316.12513 * 31 30 29 49 49 H 1.09004 * 110.29635 * 78.15906 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1489 -2.5399 -0.0071 11 6 -0.4519 -4.0543 0.0581 12 6 0.8523 -4.6293 0.6521 13 1 0.8707 -4.5047 1.7348 14 6 1.9341 -3.7395 -0.0017 15 1 2.8735 -3.7553 0.5507 16 6 2.1398 -4.1405 -1.4640 17 6 2.4858 -5.6238 -1.5763 18 6 1.2888 -6.4410 -1.0716 19 7 1.0226 -6.0297 0.3116 20 6 0.9300 -6.9653 1.2773 21 8 0.7106 -6.6342 2.4232 22 6 1.0992 -8.4226 0.9334 23 1 0.3270 -8.7465 0.2355 24 6 1.0899 -9.2902 2.2081 25 6 2.5417 -9.4187 2.6111 26 6 3.1160 -9.8048 3.8136 27 6 4.4981 -9.8278 3.9105 28 6 5.2530 -9.4673 2.8100 29 7 4.6736 -9.1069 1.6837 30 6 3.3577 -9.0730 1.5510 31 6 2.5060 -8.6933 0.3573 32 1 -0.4851 0.8400 0.0004 33 1 -0.5623 -2.1182 -0.9233 34 1 -0.5797 -2.0380 0.8593 35 1 -0.6336 -4.4561 -0.9387 36 1 -1.2982 -4.2550 0.7150 37 1 2.9524 -3.5496 -1.8870 38 1 1.2250 -3.9423 -2.0225 39 1 3.3622 -5.8429 -0.9663 40 1 2.6882 -5.8752 -2.6174 41 1 1.5277 -7.5041 -1.1020 42 1 0.4155 -6.2394 -1.6919 43 1 0.6702 -10.2717 1.9870 44 1 0.5193 -8.8032 2.9988 45 1 2.4992 -10.0810 4.6560 46 1 4.9784 -10.1229 4.8317 47 1 6.3309 -9.4820 2.8745 48 1 2.8983 -7.7932 -0.1160 49 1 2.4734 -9.5134 -0.3601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049861739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:35 Heat of formation + Delta-G solvation = 39.870326 kcal Electronic energy + Delta-G solvation = -30870.297446 eV Core-core repulsion = 26990.947103 eV Total energy + Delta-G solvation = -3879.350343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34011 -40.05706 -38.13288 -36.05517 -35.24030 -32.82284 -32.39635 -32.20223 -29.95795 -28.92458 -28.35906 -27.79070 -25.29527 -24.27681 -23.78988 -22.09398 -22.01973 -21.75681 -20.09758 -19.71346 -18.05985 -17.49965 -16.86334 -16.81078 -16.32204 -16.06453 -15.17179 -14.90411 -14.75672 -14.60037 -14.25988 -14.10947 -13.75390 -13.48858 -13.38509 -13.09632 -12.99766 -12.81671 -12.49419 -12.18400 -12.14408 -11.98238 -11.90990 -11.69699 -11.45968 -11.31869 -11.00890 -10.97032 -10.78741 -10.63257 -10.47440 -10.08770 -10.03724 -9.87840 -9.62712 -9.60450 -9.50841 -9.42813 -8.86205 -8.62956 -8.27406 -6.85224 -5.70349 -3.03988 0.93625 1.13946 2.70388 3.12367 3.40893 3.46749 3.48876 3.58390 3.73964 4.19591 4.36437 4.46935 4.50742 4.65745 4.75181 4.92927 4.96465 5.07621 5.10633 5.16181 5.24979 5.32004 5.36940 5.41586 5.49591 5.52867 5.56717 5.60915 5.63091 5.69652 5.71063 5.81128 5.86875 5.97159 6.00648 6.09025 6.13739 6.21923 6.32910 6.36501 6.50657 6.53898 6.60427 6.75370 6.98677 7.06900 7.55291 7.58339 7.63480 7.82638 7.84296 8.22067 8.33926 9.19936 9.80663 10.47034 11.41348 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.003006 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.115882 B = 9311.584016 C = 9698.752390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.180 3.820 11 C -0.150 4.150 12 C 0.131 3.869 13 H 0.100 0.900 14 C 0.156 3.844 15 H 0.058 0.942 16 C -0.129 4.129 17 C -0.135 4.135 18 C 0.096 3.904 19 N -0.589 5.589 20 C 0.517 3.483 21 O -0.538 6.538 22 C -0.110 4.110 23 H 0.117 0.883 24 C -0.067 4.067 25 C -0.137 4.137 26 C -0.063 4.063 27 C -0.174 4.174 28 C 0.099 3.901 29 N -0.477 5.477 30 C 0.117 3.883 31 C -0.071 4.071 32 H 0.251 0.749 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.101 0.899 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -23.623 0.531 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.324 5.324 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.027 3.973 13 H 0.118 0.882 14 C 0.048 3.952 15 H 0.077 0.923 16 C -0.169 4.169 17 C -0.174 4.174 18 C -0.027 4.027 19 N -0.321 5.321 20 C 0.304 3.696 21 O -0.415 6.415 22 C -0.132 4.132 23 H 0.135 0.865 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.089 4.089 27 C -0.194 4.194 28 C -0.058 4.058 29 N -0.186 5.186 30 C -0.020 4.020 31 C -0.109 4.109 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.150 0.850 46 H 0.154 0.846 47 H 0.174 0.826 48 H 0.119 0.881 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.744 -22.913 0.436 23.221 hybrid contribution 0.002 0.749 0.664 1.001 sum 3.746 -22.165 1.100 22.506 Atomic orbital electron populations 1.69955 1.04855 1.24904 1.57174 1.24783 0.95701 0.97579 1.02337 0.86058 0.78735 0.83859 0.77200 1.20535 1.21810 1.21786 1.19084 0.90415 0.82225 1.43528 0.90413 1.44986 1.01386 0.99274 1.86801 1.21350 0.84153 0.87704 1.01234 1.23087 0.96363 0.99800 0.99719 1.21852 0.96431 0.77966 1.01024 0.88180 1.21420 0.94455 0.86177 0.93190 0.92348 1.22115 1.01927 0.93061 0.99827 1.21951 0.97371 0.97252 1.00785 1.22074 0.98768 0.99347 0.82469 1.47570 1.69782 1.06830 1.07872 1.20301 0.76706 0.87382 0.85220 1.90679 1.48830 1.81993 1.19963 1.22010 0.98582 0.93376 0.99233 0.86491 1.20859 0.92632 0.99658 0.97284 1.21421 0.97610 0.99982 0.94916 1.21057 0.94824 0.96476 0.96564 1.22063 0.94374 1.02478 1.00493 1.22612 1.00276 0.95018 0.87929 1.66821 1.11627 1.13475 1.26665 1.21751 0.89218 0.95380 0.95693 1.21252 0.91037 1.03726 0.94866 0.93819 0.93990 0.92956 0.92247 0.92062 0.92154 0.91828 0.91711 0.91162 0.89398 0.91120 0.89244 0.88210 0.84993 0.84621 0.82634 0.88127 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.36 55.49 0.57 -26.45 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.22 -6.21 10.30 -15.06 -0.16 -6.37 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.07 2.94 -161.06 -0.47 -15.55 16 10 C 0.18 4.35 5.23 -2.26 -0.01 4.34 16 11 C -0.15 -2.87 6.08 -25.16 -0.15 -3.02 16 12 C 0.13 2.48 3.10 -67.10 -0.21 2.27 16 13 H 0.10 2.17 6.96 -51.93 -0.36 1.81 16 14 C 0.16 3.20 3.62 -66.15 -0.24 2.97 16 15 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.13 -2.24 5.10 -26.86 -0.14 -2.37 16 17 C -0.13 -1.71 5.87 -26.63 -0.16 -1.87 16 18 C 0.10 1.09 5.13 -3.67 -0.02 1.08 16 19 N -0.59 -8.78 2.71 -164.84 -0.45 -9.23 16 20 C 0.52 7.68 7.07 -10.99 -0.08 7.61 16 21 O -0.54 -10.15 14.83 5.56 0.08 -10.06 16 22 C -0.11 -1.12 2.51 -90.41 -0.23 -1.34 16 23 H 0.12 0.83 8.04 -51.93 -0.42 0.41 16 24 C -0.07 -0.66 6.10 -27.00 -0.16 -0.83 16 25 C -0.14 -1.58 6.16 -104.21 -0.64 -2.23 16 26 C -0.06 -0.65 10.17 -39.27 -0.40 -1.05 16 27 C -0.17 -1.64 10.12 -39.46 -0.40 -2.04 16 28 C 0.10 1.06 11.18 -17.61 -0.20 0.86 16 29 N -0.48 -6.28 10.35 -9.19 -0.10 -6.38 16 30 C 0.12 1.45 7.32 -82.03 -0.60 0.85 16 31 C -0.07 -0.70 4.92 -26.76 -0.13 -0.83 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.04 1.10 7.63 -51.93 -0.40 0.71 16 34 H 0.05 1.42 7.31 -51.93 -0.38 1.04 16 35 H 0.06 1.03 6.78 -51.93 -0.35 0.68 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16 39 H 0.06 0.85 7.57 -51.93 -0.39 0.46 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.73 4.31 -51.93 -0.22 0.51 16 42 H 0.07 0.77 7.51 -51.93 -0.39 0.38 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.16 6.97 -51.93 -0.36 0.80 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.10 1.08 5.09 -51.93 -0.26 0.82 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -33.99 371.95 -11.05 -45.04 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.26 Total: 2.09 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -4.01 Total: -2.30 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.44 Total: -57.60 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.99 -11.05 -45.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049861739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.914 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds