Wall clock time and date at job start Wed Apr 1 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47512 * 265.00450 * 3 2 1 5 5 H 1.48505 * 109.47033 * 25.00306 * 3 2 1 6 6 H 1.48507 * 109.47321 * 145.00050 * 3 2 1 7 7 C 1.38811 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00382 * 184.55543 * 7 2 1 9 9 N 1.36940 * 120.00121 * 4.54919 * 7 2 1 10 10 C 1.48379 * 126.55670 * 5.13655 * 9 7 2 11 11 C 1.55478 * 106.97423 * 185.53597 * 10 9 7 12 12 C 1.53426 * 101.67059 * 22.60118 * 11 10 9 13 13 H 1.08999 * 111.15408 * 78.81346 * 12 11 10 14 14 C 1.45420 * 126.02455 * 186.02768 * 9 7 2 15 15 H 1.08998 * 107.61653 * 264.00481 * 14 9 7 16 16 C 1.51087 * 120.14555 * 29.03852 * 14 9 7 17 17 C 1.53866 * 107.39882 * 184.07536 * 16 14 9 18 18 C 1.52710 * 111.52552 * 303.03604 * 17 16 14 19 19 N 1.45725 * 116.37065 * 207.28475 * 12 11 10 20 20 C 1.34778 * 122.22750 * 350.98419 * 19 12 11 21 21 O 1.21516 * 119.99698 * 355.17196 * 20 19 12 22 22 C 1.48170 * 120.00179 * 175.16303 * 20 19 12 23 23 C 1.39307 * 119.72328 * 172.94931 * 22 20 19 24 24 C 1.38586 * 119.05782 * 179.97438 * 23 22 20 25 25 C 1.38634 * 118.48964 * 0.02562 * 24 23 22 26 26 C 1.50699 * 120.32110 * 180.02562 * 25 24 23 27 27 C 1.53005 * 117.49564 * 188.74566 * 26 25 24 28 28 C 1.52996 * 117.50049 * 120.08574 * 26 25 24 29 29 C 1.38554 * 119.35096 * 359.97438 * 25 24 23 30 30 N 1.31520 * 120.90368 * 359.74465 * 29 25 24 31 31 H 0.96992 * 119.99735 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.95973 * 66.16149 * 10 9 7 33 33 H 1.09004 * 109.99297 * 304.93566 * 10 9 7 34 34 H 1.09000 * 110.98484 * 264.50221 * 11 10 9 35 35 H 1.09003 * 110.98436 * 140.69483 * 11 10 9 36 36 H 1.09004 * 109.88419 * 64.57752 * 16 14 9 37 37 H 1.09003 * 109.87843 * 303.57267 * 16 14 9 38 38 H 1.08997 * 109.07084 * 63.56962 * 17 16 14 39 39 H 1.09002 * 109.06635 * 182.57915 * 17 16 14 40 40 H 1.08999 * 109.15964 * 168.93996 * 18 17 16 41 41 H 1.09001 * 109.16190 * 288.17629 * 18 17 16 42 42 H 1.08000 * 120.46873 * 0.02562 * 23 22 20 43 43 H 1.08005 * 120.75616 * 180.02562 * 24 23 22 44 44 H 1.09002 * 115.55231 * 334.41108 * 26 25 24 45 45 H 1.08996 * 117.49528 * 359.97438 * 27 26 25 46 46 H 1.08998 * 117.49523 * 145.01736 * 27 26 25 47 47 H 1.09000 * 117.50141 * 214.97711 * 28 26 25 48 48 H 1.09003 * 117.49839 * 359.97319 * 28 26 25 49 49 H 1.08003 * 119.54788 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 1.3988 2.6808 0.5918 6 1 3.4910 1.4730 0.8031 7 6 2.0103 -1.2021 -0.0005 8 1 3.0878 -1.2037 0.0737 9 7 1.3289 -2.3862 -0.0951 10 6 -0.1300 -2.5516 -0.3094 11 6 -0.4350 -4.0724 -0.2018 12 6 0.7572 -4.5702 0.6258 13 1 0.6196 -4.3516 1.6847 14 6 1.9062 -3.7163 0.0150 15 1 2.1035 -4.0750 -0.9952 16 6 3.1391 -3.9409 0.8590 17 6 3.5531 -5.4127 0.6863 18 6 2.4192 -6.3621 1.0670 19 7 1.1502 -5.9589 0.4243 20 6 0.4065 -6.8185 -0.3001 21 8 -0.6721 -6.4694 -0.7374 22 6 0.9043 -8.1890 -0.5634 23 6 0.0727 -9.1186 -1.1838 24 6 0.5526 -10.3964 -1.4239 25 6 1.8480 -10.7003 -1.0345 26 6 2.4119 -12.0767 -1.2760 27 6 3.7650 -12.4069 -0.6425 28 6 3.6606 -12.1846 -2.1535 29 6 2.6193 -9.7257 -0.4220 30 7 2.1407 -8.5190 -0.2111 31 1 -0.4849 0.8400 0.0004 32 1 -0.4046 -2.1862 -1.2989 33 1 -0.6832 -2.0061 0.4552 34 1 -0.4482 -4.5385 -1.1870 35 1 -1.3743 -4.2459 0.3232 36 1 2.9131 -3.7397 1.9063 37 1 3.9434 -3.2873 0.5214 38 1 3.8282 -5.5855 -0.3541 39 1 4.4154 -5.6168 1.3210 40 1 2.6764 -7.3723 0.7485 41 1 2.2907 -6.3502 2.1493 42 1 -0.9314 -8.8471 -1.4743 43 1 -0.0684 -11.1385 -1.9035 44 1 1.6784 -12.8801 -1.3436 45 1 4.2473 -11.6284 -0.0515 46 1 3.9216 -13.4276 -0.2938 47 1 3.7488 -13.0592 -2.7981 48 1 4.0740 -11.2600 -2.5565 49 1 3.6290 -9.9589 -0.1177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049872426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:09:07 Heat of formation + Delta-G solvation = 85.263237 kcal Electronic energy + Delta-G solvation = -30230.131896 eV Core-core repulsion = 26352.749937 eV Total energy + Delta-G solvation = -3877.381959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14209 -39.79735 -37.89105 -37.22361 -35.30218 -33.02508 -32.47905 -32.03256 -31.17351 -28.84788 -28.02826 -25.84527 -24.46733 -24.28715 -23.79479 -22.77917 -21.46194 -21.30964 -20.87067 -19.78297 -19.21514 -17.47086 -17.12069 -16.35016 -16.08470 -15.53699 -15.31166 -15.13891 -14.89608 -14.71209 -14.35366 -14.21623 -14.07539 -13.73053 -13.36411 -13.24626 -13.10024 -12.52998 -12.37304 -12.23312 -12.07843 -11.95785 -11.70611 -11.51588 -11.44573 -11.08234 -10.91300 -10.80639 -10.71880 -10.52154 -10.34463 -10.08242 -10.07343 -9.94173 -9.74955 -9.57356 -9.32797 -9.12599 -8.74049 -8.55941 -8.07946 -6.75011 -5.61792 -2.98973 0.40022 0.90575 2.69003 3.17309 3.36908 3.44498 3.49026 3.50784 3.73292 3.87081 4.09714 4.31936 4.43067 4.47163 4.54179 4.55936 4.61447 4.93069 4.95246 5.13809 5.16117 5.36176 5.38254 5.42628 5.47184 5.50079 5.58285 5.61315 5.67529 5.74268 5.75527 5.82094 5.86830 5.96559 6.08920 6.20052 6.23978 6.33416 6.43486 6.55042 6.63594 6.74202 6.84053 6.91000 6.99154 7.28116 7.42688 7.59132 7.73758 7.81910 7.91231 8.33301 8.41785 9.25826 9.89674 10.57960 11.47385 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.002615 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.033248 B =10706.777236 C =11464.620475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.128 4.128 12 C 0.114 3.886 13 H 0.079 0.921 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.117 4.117 17 C -0.121 4.121 18 C 0.050 3.950 19 N -0.573 5.573 20 C 0.565 3.435 21 O -0.528 6.528 22 C 0.087 3.913 23 C -0.108 4.108 24 C -0.073 4.073 25 C -0.088 4.088 26 C -0.119 4.119 27 C -0.174 4.174 28 C -0.167 4.167 29 C 0.091 3.909 30 N -0.441 5.441 31 H 0.252 0.748 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.162 0.838 41 H 0.051 0.949 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 -27.668 -0.498 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.043 3.957 11 C -0.167 4.167 12 C 0.009 3.991 13 H 0.097 0.903 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.072 4.072 19 N -0.303 5.303 20 C 0.351 3.649 21 O -0.405 6.405 22 C -0.051 4.051 23 C -0.128 4.128 24 C -0.099 4.099 25 C -0.090 4.090 26 C -0.138 4.138 27 C -0.211 4.211 28 C -0.203 4.203 29 C -0.068 4.068 30 N -0.151 5.151 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.177 0.823 41 H 0.069 0.931 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.135 0.865 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.951 -26.564 -0.345 27.224 hybrid contribution 0.018 0.407 -0.283 0.496 sum 5.969 -26.157 -0.628 26.837 Atomic orbital electron populations 1.69925 1.04885 1.24961 1.56944 1.24826 0.95649 0.97626 1.02406 0.86169 0.78535 0.83630 0.77604 1.21653 1.21748 1.20788 1.19001 0.90460 0.82418 1.43352 0.90456 1.44262 1.03961 0.99417 1.84072 1.21832 0.84222 0.89120 1.00534 1.22910 0.95712 0.97896 1.00151 1.22518 0.98382 0.78565 0.99597 0.90275 1.20864 0.91529 0.87031 0.95545 0.96558 1.21450 0.98767 0.94826 1.00477 1.21802 0.97462 0.95076 1.01647 1.23340 0.82444 1.04869 0.96595 1.47868 1.22571 1.10592 1.49287 1.17798 0.84331 0.83323 0.79438 1.90791 1.21099 1.76365 1.52274 1.21496 0.90373 0.95489 0.97705 1.22118 1.01677 0.92564 0.96463 1.21439 0.94854 0.96390 0.97188 1.20289 0.94842 0.95405 0.98466 1.20974 0.91716 0.94533 1.06595 1.23110 0.98680 1.03317 0.95980 1.23086 0.99731 1.03888 0.93640 1.22878 1.00180 0.88150 0.95562 1.67256 1.12997 1.18199 1.16691 0.93777 0.95135 0.91266 0.90438 0.91908 0.92006 0.91790 0.92225 0.91378 0.82278 0.93078 0.83106 0.84052 0.86481 0.88064 0.88052 0.88125 0.88291 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 10.51 55.49 0.58 -27.17 16 2 C -0.01 -0.25 5.47 -17.43 -0.10 -0.35 16 3 Si 0.91 22.59 29.56 -169.99 -5.02 17.56 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.36 9.92 -15.06 -0.15 -6.51 16 8 H 0.08 2.11 7.43 -52.48 -0.39 1.72 16 9 N -0.59 -15.78 3.36 -162.89 -0.55 -16.32 16 10 C 0.17 4.37 5.59 -1.69 -0.01 4.36 16 11 C -0.13 -2.85 4.99 -25.19 -0.13 -2.97 16 12 C 0.11 2.33 3.28 -66.72 -0.22 2.11 16 13 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 14 C 0.16 3.54 2.61 -68.07 -0.18 3.36 16 15 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -2.17 5.52 -27.24 -0.15 -2.32 16 17 C -0.12 -1.78 5.93 -26.43 -0.16 -1.94 16 18 C 0.05 0.72 6.23 -3.45 -0.02 0.70 16 19 N -0.57 -10.07 2.91 -164.89 -0.48 -10.55 16 20 C 0.57 9.82 7.63 -12.18 -0.09 9.73 16 21 O -0.53 -10.46 13.28 5.35 0.07 -10.39 16 22 C 0.09 1.19 6.66 -83.01 -0.55 0.63 16 23 C -0.11 -1.20 9.63 -39.06 -0.38 -1.58 16 24 C -0.07 -0.60 9.88 -39.31 -0.39 -0.99 16 25 C -0.09 -0.69 5.63 -104.36 -0.59 -1.27 16 26 C -0.12 -0.65 6.06 -91.77 -0.56 -1.20 16 27 C -0.17 -0.76 9.87 -26.69 -0.26 -1.03 16 28 C -0.17 -0.80 10.17 -26.69 -0.27 -1.07 16 29 C 0.09 0.80 10.46 -17.57 -0.18 0.62 16 30 N -0.44 -5.24 6.13 -9.80 -0.06 -5.30 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.07 1.97 6.78 -51.93 -0.35 1.61 16 34 H 0.08 1.78 6.30 -51.93 -0.33 1.45 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 37 H 0.06 1.23 7.77 -51.93 -0.40 0.82 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.16 2.08 3.54 -95.42 -0.34 1.75 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.15 1.65 7.66 -52.49 -0.40 1.25 16 43 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.41 6.20 -51.93 -0.32 0.09 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.16 1.01 6.04 -52.48 -0.32 0.69 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -33.31 378.22 -11.61 -44.92 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.47 Total: 1.28 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -4.38 Total: 0.27 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.50 Total: -59.35 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.31 -11.61 -44.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049872426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.179 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds