Wall clock time and date at job start Wed Apr 1 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00222 * 2 1 4 4 H 1.48507 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46915 * 299.99946 * 3 2 1 6 6 H 1.48497 * 109.47349 * 60.00039 * 3 2 1 7 7 C 1.38818 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99821 * 165.89222 * 7 2 1 9 9 N 1.36928 * 119.99582 * 345.61660 * 7 2 1 10 10 C 1.46877 * 120.46966 * 327.87065 * 9 7 2 11 11 C 1.52867 * 109.01941 * 235.49134 * 10 9 7 12 12 C 1.52671 * 109.17168 * 307.81566 * 11 10 9 13 13 C 1.53481 * 113.62021 * 188.98946 * 12 11 10 14 14 N 1.47670 * 85.98784 * 137.71040 * 13 12 11 15 15 C 1.34776 * 134.45440 * 155.70205 * 14 13 12 16 16 O 1.21556 * 119.99922 * 184.74292 * 15 14 13 17 17 C 1.47844 * 120.00508 * 4.74330 * 15 14 13 18 18 C 1.40019 * 120.55450 * 38.43322 * 17 15 14 19 19 C 1.38365 * 118.28738 * 179.73546 * 18 17 15 20 20 C 1.38353 * 119.29860 * 0.52194 * 19 18 17 21 21 N 1.31932 * 121.08233 * 359.73942 * 20 19 18 22 22 C 1.31696 * 121.87732 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.71397 * 179.97438 * 22 21 20 24 24 C 1.52994 * 117.49978 * 0.31385 * 23 22 21 25 25 C 1.52994 * 117.50414 * 291.65131 * 23 22 21 26 26 C 1.47660 * 91.08345 * 335.68111 * 14 13 12 27 27 C 1.52678 * 113.18791 * 57.46321 * 12 11 10 28 28 C 1.46892 * 120.46548 * 148.14864 * 9 7 2 29 29 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.59023 * 355.31090 * 10 9 7 31 31 H 1.08997 * 109.59309 * 115.75462 * 10 9 7 32 32 H 1.08994 * 109.61216 * 187.84292 * 11 10 9 33 33 H 1.09000 * 109.44612 * 67.69018 * 11 10 9 34 34 H 1.09002 * 113.79394 * 251.97895 * 13 12 11 35 35 H 1.09004 * 113.79370 * 23.44071 * 13 12 11 36 36 H 1.08000 * 120.86081 * 0.02562 * 18 17 15 37 37 H 1.07989 * 120.35044 * 180.26164 * 19 18 17 38 38 H 1.08002 * 119.46162 * 179.72015 * 20 19 18 39 39 H 1.08999 * 115.54580 * 145.97780 * 23 22 21 40 40 H 1.09001 * 117.50141 * 359.97438 * 24 23 22 41 41 H 1.09004 * 117.49854 * 145.01897 * 24 23 22 42 42 H 1.08991 * 117.50167 * 214.98509 * 25 23 22 43 43 H 1.09006 * 117.49558 * 359.97438 * 25 23 22 44 44 H 1.09002 * 113.79278 * 270.04577 * 26 14 13 45 45 H 1.09000 * 113.79053 * 138.58428 * 26 14 13 46 46 H 1.08997 * 109.53180 * 182.51994 * 27 12 11 47 47 H 1.08991 * 109.59175 * 62.33041 * 27 12 11 48 48 H 1.08996 * 109.58706 * 244.25400 * 28 9 7 49 49 H 1.08999 * 109.58427 * 4.68844 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0658 -1.2162 -0.2285 9 7 1.3577 -2.3695 0.2935 10 6 0.2338 -2.3767 1.2391 11 6 0.5253 -3.3835 2.3518 12 6 0.8881 -4.7290 1.7282 13 6 0.9882 -5.8721 2.7475 14 7 0.2708 -6.6879 1.7472 15 6 0.1854 -8.0086 1.4921 16 8 -0.4337 -8.4015 0.5226 17 6 0.8447 -8.9794 2.3912 18 6 0.8511 -8.7761 3.7765 19 6 1.4770 -9.7173 4.5746 20 6 2.0802 -10.8130 3.9831 21 7 2.0630 -10.9758 2.6740 22 6 1.4764 -10.1104 1.8731 23 6 1.4867 -10.3444 0.3844 24 6 2.1865 -11.6048 -0.1278 25 6 2.8301 -10.2321 -0.3391 26 6 -0.3159 -5.4770 1.1391 27 6 2.0815 -4.6495 0.7793 28 6 1.7758 -3.6333 -0.3276 29 1 -0.4850 0.8401 -0.0004 30 1 0.1126 -1.3829 1.6703 31 1 -0.6795 -2.6657 0.7190 32 1 -0.3573 -3.4995 2.9807 33 1 1.3588 -3.0253 2.9560 34 1 2.0088 -6.2051 2.9361 35 1 0.4204 -5.6974 3.6614 36 1 0.3757 -7.9093 4.2114 37 1 1.4982 -9.5957 5.6474 38 1 2.5734 -11.5469 4.6032 39 1 0.5977 -10.0099 -0.1501 40 1 2.6399 -12.2647 0.6119 41 1 1.7581 -12.0993 -0.9996 42 1 2.8249 -9.8241 -1.3497 43 1 3.7065 -9.9886 0.2616 44 1 -1.2713 -5.1848 1.5750 45 1 -0.3318 -5.4957 0.0494 46 1 2.2601 -5.6289 0.3355 47 1 2.9665 -4.3324 1.3308 48 1 0.9734 -4.0125 -0.9603 49 1 2.6701 -3.4670 -0.9281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050579607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:41 Heat of formation + Delta-G solvation = 87.483971 kcal Electronic energy + Delta-G solvation = -30118.745371 eV Core-core repulsion = 26241.459711 eV Total energy + Delta-G solvation = -3877.285660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.16942 -40.23957 -38.12885 -36.99423 -35.86527 -33.08375 -32.33871 -31.45622 -30.59414 -29.78077 -27.27627 -26.41856 -24.74742 -24.57289 -23.82268 -22.43079 -22.36686 -21.01219 -20.91695 -19.65869 -18.10519 -17.37157 -17.27174 -16.51269 -16.43971 -16.08796 -15.40253 -15.33897 -14.88708 -14.58371 -14.33848 -14.03017 -13.82571 -13.68459 -13.43510 -13.36725 -13.20779 -12.86804 -12.61812 -12.33929 -11.95388 -11.89204 -11.71982 -11.59295 -11.44365 -11.06964 -10.93698 -10.78597 -10.58166 -10.53481 -10.31745 -10.24927 -10.11787 -10.08630 -9.89258 -9.67770 -9.66958 -9.33145 -9.09087 -8.60783 -8.50095 -6.63974 -5.82482 -3.29459 0.48551 0.88725 2.68503 2.77769 3.34032 3.37873 3.42502 3.44293 3.82561 3.96054 4.18797 4.39883 4.46002 4.46796 4.56121 4.72803 4.87913 4.95959 4.98673 5.03861 5.08044 5.16315 5.35518 5.39115 5.40653 5.45789 5.53185 5.57043 5.60504 5.69944 5.73599 5.78933 5.82038 5.89392 6.02995 6.04437 6.06218 6.18129 6.23419 6.33017 6.41026 6.52997 6.57108 6.62575 6.78788 6.93470 7.28186 7.59385 7.61517 7.73139 7.77636 8.10274 8.44996 9.19168 9.80950 10.39244 11.25754 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002615 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.669801 B =10706.686338 C =11176.743943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.173 3.827 11 C -0.127 4.127 12 C -0.072 4.072 13 C 0.099 3.901 14 N -0.632 5.632 15 C 0.585 3.415 16 O -0.534 6.534 17 C -0.169 4.169 18 C -0.040 4.040 19 C -0.186 4.186 20 C 0.120 3.880 21 N -0.486 5.486 22 C 0.214 3.786 23 C -0.132 4.132 24 C -0.158 4.158 25 C -0.159 4.159 26 C 0.119 3.881 27 C -0.108 4.108 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.019 0.981 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -19.374 9.634 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.167 4.167 12 C -0.073 4.073 13 C -0.024 4.024 14 N -0.366 5.366 15 C 0.374 3.626 16 O -0.413 6.413 17 C -0.174 4.174 18 C -0.066 4.066 19 C -0.206 4.206 20 C -0.037 4.037 21 N -0.194 5.194 22 C 0.076 3.924 23 C -0.151 4.151 24 C -0.195 4.195 25 C -0.197 4.197 26 C -0.002 4.002 27 C -0.147 4.147 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.037 0.963 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.924 -20.369 8.695 22.339 hybrid contribution -0.105 1.624 0.747 1.790 sum 2.819 -18.745 9.442 21.177 Atomic orbital electron populations 1.70010 1.05285 1.25438 1.53774 1.25145 0.95304 0.98455 1.00406 0.86248 0.79413 0.83961 0.77285 1.20223 1.21675 1.21563 1.19187 0.91642 0.84383 1.43215 0.91900 1.43960 1.37270 1.02798 1.47215 1.20632 0.89074 0.97539 0.88023 1.22074 1.00257 0.94542 0.99842 1.21969 0.95984 0.94159 0.95177 1.23550 0.96957 0.88586 0.93259 1.50023 1.48598 1.03679 1.34253 1.17629 0.79994 0.80501 0.84482 1.90710 1.43604 1.77860 1.29076 1.20696 1.04215 0.97956 0.94556 1.21786 0.94463 0.98252 0.92097 1.22082 1.00862 0.96114 1.01527 1.22932 0.94278 0.95740 0.90737 1.67477 1.17854 1.29041 1.05074 1.20453 0.89452 0.87669 0.94853 1.21427 0.99521 1.04931 0.89202 1.22937 1.03083 0.90668 1.02818 1.22941 0.94687 1.00712 1.01314 1.23328 0.97181 0.79270 1.00412 1.21768 0.95742 0.99411 0.97820 1.20891 0.97754 0.86877 0.92416 0.93649 0.89605 0.96300 0.92822 0.91943 0.90367 0.89756 0.84308 0.84135 0.82270 0.83587 0.87578 0.88587 0.88100 0.88952 0.89632 0.89677 0.92942 0.91786 0.96323 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 11.29 55.49 0.63 -24.72 16 2 C 0.01 0.16 4.95 -17.43 -0.09 0.07 16 3 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.73 9.54 -15.06 -0.14 -6.87 16 8 H 0.06 1.65 7.87 -52.49 -0.41 1.24 16 9 N -0.59 -13.98 2.95 -172.50 -0.51 -14.49 16 10 C 0.17 3.79 5.16 -3.90 -0.02 3.77 16 11 C -0.13 -2.09 5.24 -26.97 -0.14 -2.23 16 12 C -0.07 -1.06 0.77 -154.42 -0.12 -1.18 16 13 C 0.10 1.17 6.09 -3.16 -0.02 1.15 16 14 N -0.63 -8.79 3.41 -181.35 -0.62 -9.41 16 15 C 0.58 8.86 7.36 -12.33 -0.09 8.77 16 16 O -0.53 -9.65 15.11 5.32 0.08 -9.57 16 17 C -0.17 -2.19 5.69 -104.82 -0.60 -2.79 16 18 C -0.04 -0.40 9.04 -38.87 -0.35 -0.75 16 19 C -0.19 -1.49 10.10 -39.49 -0.40 -1.89 16 20 C 0.12 1.07 11.17 -17.47 -0.20 0.87 16 21 N -0.49 -5.72 9.28 -9.14 -0.08 -5.80 16 22 C 0.21 2.80 6.49 -82.17 -0.53 2.27 16 23 C -0.13 -1.71 5.31 -91.78 -0.49 -2.20 16 24 C -0.16 -1.67 10.03 -26.70 -0.27 -1.94 16 25 C -0.16 -1.77 10.24 -26.70 -0.27 -2.05 16 26 C 0.12 1.78 7.63 -3.15 -0.02 1.76 16 27 C -0.11 -1.77 5.22 -26.72 -0.14 -1.90 16 28 C 0.15 2.96 6.38 -3.66 -0.02 2.94 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.09 2.14 6.17 -51.93 -0.32 1.82 16 31 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 36 H 0.14 1.16 6.92 -52.49 -0.36 0.79 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.15 2.16 5.77 -51.93 -0.30 1.86 16 40 H 0.11 1.12 7.54 -51.93 -0.39 0.73 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.19 8.07 -51.93 -0.42 0.78 16 45 H 0.08 1.41 7.41 -51.93 -0.38 1.03 16 46 H 0.05 0.82 8.01 -51.93 -0.42 0.41 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 49 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -31.12 389.83 -11.14 -42.27 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.57 Total: 2.00 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.91 Total: -2.21 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.59 Total: -54.43 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.12 -11.14 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050579607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.752 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds