Wall clock time and date at job start Wed Apr 1 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00222 * 2 1 4 4 H 1.48507 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46915 * 299.99946 * 3 2 1 6 6 H 1.48497 * 109.47349 * 60.00039 * 3 2 1 7 7 C 1.38818 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99821 * 165.89222 * 7 2 1 9 9 N 1.36928 * 119.99582 * 345.61660 * 7 2 1 10 10 C 1.46877 * 120.46966 * 327.87065 * 9 7 2 11 11 C 1.52867 * 109.01941 * 235.49134 * 10 9 7 12 12 C 1.52671 * 109.17168 * 307.81566 * 11 10 9 13 13 C 1.53481 * 113.62021 * 188.98946 * 12 11 10 14 14 N 1.47670 * 85.98784 * 137.71040 * 13 12 11 15 15 C 1.34776 * 134.45440 * 155.70205 * 14 13 12 16 16 O 1.21556 * 119.99922 * 184.74292 * 15 14 13 17 17 C 1.47844 * 120.00508 * 4.74330 * 15 14 13 18 18 C 1.40019 * 120.55450 * 38.43322 * 17 15 14 19 19 C 1.38365 * 118.28738 * 179.73546 * 18 17 15 20 20 C 1.38353 * 119.29860 * 0.52194 * 19 18 17 21 21 N 1.31932 * 121.08233 * 359.73942 * 20 19 18 22 22 C 1.31696 * 121.87732 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.71397 * 179.97438 * 22 21 20 24 24 C 1.52994 * 117.49978 * 0.31385 * 23 22 21 25 25 C 1.52994 * 117.50414 * 291.65131 * 23 22 21 26 26 C 1.47660 * 91.08345 * 335.68111 * 14 13 12 27 27 C 1.52678 * 113.18791 * 57.46321 * 12 11 10 28 28 C 1.46892 * 120.46548 * 148.14864 * 9 7 2 29 29 H 0.97003 * 119.99833 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.59023 * 355.31090 * 10 9 7 31 31 H 1.08997 * 109.59309 * 115.75462 * 10 9 7 32 32 H 1.08994 * 109.61216 * 187.84292 * 11 10 9 33 33 H 1.09000 * 109.44612 * 67.69018 * 11 10 9 34 34 H 1.09002 * 113.79394 * 251.97895 * 13 12 11 35 35 H 1.09004 * 113.79370 * 23.44071 * 13 12 11 36 36 H 1.08000 * 120.86081 * 0.02562 * 18 17 15 37 37 H 1.07989 * 120.35044 * 180.26164 * 19 18 17 38 38 H 1.08002 * 119.46162 * 179.72015 * 20 19 18 39 39 H 1.08999 * 115.54580 * 145.97780 * 23 22 21 40 40 H 1.09001 * 117.50141 * 359.97438 * 24 23 22 41 41 H 1.09004 * 117.49854 * 145.01897 * 24 23 22 42 42 H 1.08991 * 117.50167 * 214.98509 * 25 23 22 43 43 H 1.09006 * 117.49558 * 359.97438 * 25 23 22 44 44 H 1.09002 * 113.79278 * 270.04577 * 26 14 13 45 45 H 1.09000 * 113.79053 * 138.58428 * 26 14 13 46 46 H 1.08997 * 109.53180 * 182.51994 * 27 12 11 47 47 H 1.08991 * 109.59175 * 62.33041 * 27 12 11 48 48 H 1.08996 * 109.58706 * 244.25400 * 28 9 7 49 49 H 1.08999 * 109.58427 * 4.68844 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0658 -1.2162 -0.2285 9 7 1.3577 -2.3695 0.2935 10 6 0.2338 -2.3767 1.2391 11 6 0.5253 -3.3835 2.3518 12 6 0.8881 -4.7290 1.7282 13 6 0.9882 -5.8721 2.7475 14 7 0.2708 -6.6879 1.7472 15 6 0.1854 -8.0086 1.4921 16 8 -0.4337 -8.4015 0.5226 17 6 0.8447 -8.9794 2.3912 18 6 0.8511 -8.7761 3.7765 19 6 1.4770 -9.7173 4.5746 20 6 2.0802 -10.8130 3.9831 21 7 2.0630 -10.9758 2.6740 22 6 1.4764 -10.1104 1.8731 23 6 1.4867 -10.3444 0.3844 24 6 2.1865 -11.6048 -0.1278 25 6 2.8301 -10.2321 -0.3391 26 6 -0.3159 -5.4770 1.1391 27 6 2.0815 -4.6495 0.7793 28 6 1.7758 -3.6333 -0.3276 29 1 -0.4850 0.8401 -0.0004 30 1 0.1126 -1.3829 1.6703 31 1 -0.6795 -2.6657 0.7190 32 1 -0.3573 -3.4995 2.9807 33 1 1.3588 -3.0253 2.9560 34 1 2.0088 -6.2051 2.9361 35 1 0.4204 -5.6974 3.6614 36 1 0.3757 -7.9093 4.2114 37 1 1.4982 -9.5957 5.6474 38 1 2.5734 -11.5469 4.6032 39 1 0.5977 -10.0099 -0.1501 40 1 2.6399 -12.2647 0.6119 41 1 1.7581 -12.0993 -0.9996 42 1 2.8249 -9.8241 -1.3497 43 1 3.7065 -9.9886 0.2616 44 1 -1.2713 -5.1848 1.5750 45 1 -0.3318 -5.4957 0.0494 46 1 2.2601 -5.6289 0.3355 47 1 2.9665 -4.3324 1.3308 48 1 0.9734 -4.0125 -0.9603 49 1 2.6701 -3.4670 -0.9281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050579607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:40 Heat of formation + Delta-G solvation = 70.386541 kcal Electronic energy + Delta-G solvation = -30119.486771 eV Core-core repulsion = 26241.459711 eV Total energy + Delta-G solvation = -3878.027060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.17770 -41.23486 -39.32163 -37.88386 -37.43782 -34.37901 -33.64921 -32.34399 -32.02390 -31.37588 -28.68228 -27.52662 -26.09217 -25.51271 -24.95951 -23.94163 -23.26880 -22.55712 -21.80295 -20.76069 -19.57416 -18.54032 -18.11908 -17.99221 -17.38820 -17.14951 -16.82183 -16.50687 -16.16272 -15.66032 -15.41820 -15.35702 -15.22090 -14.99519 -14.71362 -14.55118 -14.18208 -14.06680 -13.86835 -13.51178 -13.34568 -13.07733 -12.97435 -12.94964 -12.75965 -12.60458 -12.42745 -12.25833 -11.99321 -11.83337 -11.76660 -11.50549 -11.34364 -11.30638 -11.23973 -10.95021 -10.87962 -10.52379 -10.40880 -9.90124 -9.69518 -8.58453 -7.85276 -5.35341 -0.31073 0.16564 1.47011 1.49501 1.59410 1.64233 1.72548 2.52359 2.57563 3.00575 3.15470 3.22964 3.27693 3.41871 3.60027 3.71348 3.81169 3.89572 3.96419 4.01597 4.07559 4.13732 4.20658 4.22008 4.34687 4.46049 4.48261 4.55812 4.61421 4.65762 4.70860 4.71425 4.80613 4.82015 4.93146 4.94268 5.01969 5.04109 5.05554 5.13895 5.17902 5.19595 5.28218 5.34980 5.36072 5.54895 5.62575 5.68438 5.82271 6.44330 6.61814 6.89184 6.99497 7.19446 7.89017 8.41533 9.20208 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020014 B = 0.002615 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.669801 B =10706.686338 C =11176.743943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.061 0.939 9 N -0.607 5.607 10 C 0.178 3.822 11 C -0.110 4.110 12 C -0.073 4.073 13 C 0.118 3.882 14 N -0.630 5.630 15 C 0.582 3.418 16 O -0.577 6.577 17 C -0.192 4.192 18 C -0.039 4.039 19 C -0.170 4.170 20 C 0.118 3.882 21 N -0.504 5.504 22 C 0.195 3.805 23 C -0.153 4.153 24 C -0.142 4.142 25 C -0.156 4.156 26 C 0.115 3.885 27 C -0.093 4.093 28 C 0.145 3.855 29 H 0.250 0.750 30 H 0.051 0.949 31 H -0.005 1.005 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.195 0.805 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.005 0.995 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -20.808 13.106 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.079 0.921 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.150 4.150 12 C -0.074 4.074 13 C -0.003 4.003 14 N -0.363 5.363 15 C 0.372 3.628 16 O -0.459 6.459 17 C -0.198 4.198 18 C -0.065 4.065 19 C -0.190 4.190 20 C -0.039 4.039 21 N -0.213 5.213 22 C 0.058 3.942 23 C -0.172 4.172 24 C -0.179 4.179 25 C -0.194 4.194 26 C -0.007 4.007 27 C -0.132 4.132 28 C 0.019 3.981 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.014 0.986 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.177 0.823 37 H 0.199 0.801 38 H 0.212 0.788 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.023 0.977 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.456 -21.817 12.188 25.385 hybrid contribution -0.577 2.017 -0.360 2.129 sum 3.879 -19.800 11.828 23.388 Atomic orbital electron populations 1.70162 1.06624 1.25758 1.55296 1.25854 0.96033 1.01414 1.00831 0.85257 0.78678 0.80037 0.76753 1.19143 1.22255 1.21397 1.19479 0.91829 0.85633 1.42369 0.92086 1.44225 1.37470 1.03157 1.48224 1.20476 0.87816 0.97423 0.89031 1.21837 1.01716 0.93481 0.97932 1.21855 0.95043 0.94416 0.96127 1.23617 0.98376 0.85403 0.92947 1.50027 1.48425 1.03252 1.34626 1.18064 0.79499 0.80955 0.84257 1.90688 1.45533 1.78606 1.31044 1.20589 1.05761 0.97761 0.95651 1.22073 0.94306 0.99426 0.90732 1.22512 0.98614 0.94547 1.03279 1.23643 0.93532 0.96690 0.89987 1.67490 1.18327 1.28952 1.06489 1.20427 0.90609 0.88338 0.94850 1.21315 0.99097 1.06750 0.89993 1.22972 1.01917 0.90132 1.02926 1.22954 0.93982 1.01247 1.01221 1.23296 0.98028 0.80352 0.99061 1.21552 0.96768 0.98117 0.96811 1.20961 0.96819 0.86639 0.93677 0.94112 0.93007 0.98645 0.89837 0.91521 0.88683 0.86169 0.82345 0.80084 0.78822 0.86311 0.87284 0.87457 0.87898 0.88854 0.88452 0.92463 0.92279 0.91158 0.97733 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 11.29 21.65 0.24 -53.88 16 2 C -0.05 -2.49 4.95 84.86 0.42 -2.07 16 3 Si 0.96 44.00 29.58 68.60 2.03 46.03 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.26 -14.14 9.54 84.04 0.80 -13.34 16 8 H 0.06 3.24 7.87 -2.91 -0.02 3.22 16 9 N -0.61 -29.44 2.95 -699.67 -2.06 -31.51 16 10 C 0.18 7.94 5.16 86.26 0.45 8.39 16 11 C -0.11 -3.43 5.24 30.44 0.16 -3.27 16 12 C -0.07 -2.04 0.77 -52.03 -0.04 -2.08 16 13 C 0.12 2.32 6.09 86.31 0.53 2.85 16 14 N -0.63 -16.64 3.41 -845.94 -2.89 -19.52 16 15 C 0.58 17.48 7.36 86.79 0.64 18.11 16 16 O -0.58 -21.81 15.11 -3.89 -0.06 -21.87 16 17 C -0.19 -4.71 5.69 -19.99 -0.11 -4.82 16 18 C -0.04 -0.64 9.04 22.73 0.21 -0.43 16 19 C -0.17 -1.90 10.10 22.33 0.23 -1.67 16 20 C 0.12 1.64 11.17 84.71 0.95 2.58 16 21 N -0.50 -10.82 9.28 -182.84 -1.70 -12.52 16 22 C 0.20 4.97 6.49 42.89 0.28 5.25 16 23 C -0.15 -4.05 5.31 -11.54 -0.06 -4.11 16 24 C -0.14 -2.99 10.03 30.62 0.31 -2.68 16 25 C -0.16 -3.52 10.24 30.62 0.31 -3.21 16 26 C 0.11 3.38 7.63 86.32 0.66 4.04 16 27 C -0.09 -2.97 5.22 30.60 0.16 -2.81 16 28 C 0.14 5.97 6.38 86.42 0.55 6.52 16 29 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.05 2.66 6.17 -2.38 -0.01 2.64 16 31 H 0.00 -0.22 8.07 -2.39 -0.02 -0.24 16 32 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.12 1.62 7.90 -2.38 -0.02 1.60 16 36 H 0.16 1.85 6.92 -2.91 -0.02 1.83 16 37 H 0.18 0.56 8.06 -2.92 -0.02 0.54 16 38 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.12 3.79 5.77 -2.39 -0.01 3.78 16 40 H 0.11 2.21 7.54 -2.39 -0.02 2.20 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 43 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.10 2.63 8.07 -2.39 -0.02 2.61 16 45 H 0.06 2.00 7.41 -2.39 -0.02 1.98 16 46 H 0.06 1.81 8.01 -2.39 -0.02 1.79 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.00 0.21 7.49 -2.39 -0.02 0.19 16 49 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 Total: -1.00 -72.38 389.83 2.93 -69.45 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.95 Total: 16.57 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.42 Total: 7.25 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -6.40 Total: -117.43 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.38 2.93 -69.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050579607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.835 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds