Wall clock time and date at job start Wed Apr 1 2020 00:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47216 * 300.00601 * 3 2 1 6 6 H 1.48499 * 109.46920 * 60.01032 * 3 2 1 7 7 C 1.38803 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.66078 * 7 2 1 9 9 N 1.36941 * 120.00291 * 17.65362 * 7 2 1 10 10 C 1.46893 * 120.45820 * 28.46325 * 9 7 2 11 11 C 1.53354 * 108.74402 * 124.34249 * 10 9 7 12 12 C 1.52554 * 109.12688 * 52.25705 * 11 10 9 13 13 C 1.52955 * 114.06371 * 75.53971 * 12 11 10 14 14 N 1.47161 * 87.85528 * 139.44201 * 13 12 11 15 15 C 1.34780 * 136.00219 * 153.33683 * 14 13 12 16 16 O 1.21273 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99746 * 179.97438 * 15 14 13 18 18 H 1.08998 * 110.26186 * 60.60484 * 17 15 14 19 19 C 1.54341 * 110.29226 * 182.75811 * 17 15 14 20 20 C 1.54367 * 102.39251 * 92.59877 * 19 17 15 21 21 C 1.51219 * 105.11608 * 26.28835 * 20 19 17 22 22 C 1.38742 * 130.68903 * 162.84413 * 21 20 19 23 23 C 1.38577 * 118.56378 * 180.02562 * 22 21 20 24 24 C 1.38236 * 118.98290 * 359.97438 * 23 22 21 25 25 N 1.31689 * 120.80255 * 0.02562 * 24 23 22 26 26 C 1.32298 * 122.03199 * 359.97438 * 25 24 23 27 27 C 1.47168 * 87.99654 * 333.59371 * 14 13 12 28 28 C 1.52554 * 113.43055 * 302.66598 * 12 11 10 29 29 C 1.46883 * 120.46652 * 208.43411 * 9 7 2 30 30 H 0.97005 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.59704 * 4.55823 * 10 9 7 32 32 H 1.09007 * 109.58988 * 244.11862 * 10 9 7 33 33 H 1.09000 * 109.52491 * 292.36179 * 11 10 9 34 34 H 1.08996 * 109.52854 * 172.15256 * 11 10 9 35 35 H 1.09001 * 113.48976 * 24.69952 * 13 12 11 36 36 H 1.09001 * 113.54948 * 254.19457 * 13 12 11 37 37 H 1.09003 * 110.82189 * 210.82788 * 19 17 15 38 38 H 1.08997 * 110.82256 * 334.17185 * 19 17 15 39 39 H 1.08999 * 110.31204 * 145.19350 * 20 19 17 40 40 H 1.08995 * 110.31134 * 267.38022 * 20 19 17 41 41 H 1.08003 * 120.71898 * 0.03974 * 22 21 20 42 42 H 1.07995 * 120.51098 * 180.02562 * 23 22 21 43 43 H 1.07993 * 119.59552 * 180.27202 * 24 23 22 44 44 H 1.09002 * 113.48960 * 141.16097 * 27 14 13 45 45 H 1.09003 * 113.49014 * 271.66087 * 27 14 13 46 46 H 1.09001 * 109.52800 * 177.21698 * 28 12 11 47 47 H 1.08990 * 109.53275 * 297.42563 * 28 12 11 48 48 H 1.09000 * 109.58820 * 355.43009 * 29 9 7 49 49 H 1.08999 * 109.59330 * 115.72033 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0521 -1.2242 0.2832 9 7 1.3740 -2.3600 -0.3607 10 6 0.2451 -2.3281 -1.3001 11 6 0.5552 -3.2637 -2.4750 12 6 0.9432 -4.6357 -1.9325 13 6 -0.2388 -5.4620 -1.4231 14 7 0.3880 -6.6397 -2.0442 15 6 0.3753 -7.9705 -1.8311 16 8 -0.2852 -8.4332 -0.9253 17 6 1.1808 -8.8835 -2.7191 18 1 2.2400 -8.6343 -2.6550 19 6 0.9504 -10.3569 -2.3215 20 6 -0.2102 -10.7731 -3.2503 21 6 -0.0967 -9.8652 -4.4543 22 6 -0.6469 -9.9729 -5.7234 23 6 -0.3737 -8.9797 -6.6505 24 6 0.4337 -7.9208 -6.2794 25 7 0.9391 -7.8512 -5.0653 26 6 0.7018 -8.7788 -4.1523 27 6 1.0401 -5.7262 -2.9962 28 6 2.1324 -4.5964 -0.9777 29 6 1.8111 -3.6511 0.1864 30 1 -0.4850 0.8401 0.0004 31 1 0.1051 -1.3121 -1.6690 32 1 -0.6605 -2.6638 -0.7947 33 1 1.3809 -2.8554 -3.0577 34 1 -0.3270 -3.3583 -3.1080 35 1 -1.1901 -5.1857 -1.8779 36 1 -0.2926 -5.5212 -0.3360 37 1 1.8395 -10.9554 -2.5202 38 1 0.6594 -10.4346 -1.2740 39 1 -0.0997 -11.8151 -3.5504 40 1 -1.1672 -10.6216 -2.7511 41 1 -1.2748 -10.8124 -5.9832 42 1 -0.7859 -9.0317 -7.6473 43 1 0.6495 -7.1391 -6.9926 44 1 2.0657 -6.0076 -3.2353 45 1 0.4403 -5.5224 -3.8832 46 1 2.3231 -5.5978 -0.5919 47 1 3.0135 -4.2352 -1.5078 48 1 2.7027 -3.5065 0.7965 49 1 1.0155 -4.0774 0.7974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050637778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:32 Heat of formation + Delta-G solvation = 63.064559 kcal Electronic energy + Delta-G solvation = -30410.839710 eV Core-core repulsion = 26532.495144 eV Total energy + Delta-G solvation = -3878.344565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.39353 -40.37981 -38.50375 -36.14609 -35.72013 -33.05279 -32.39487 -30.67739 -29.82039 -29.61340 -28.70878 -26.78803 -25.84674 -24.15497 -23.75123 -22.49881 -22.28116 -21.55986 -20.72840 -19.00206 -17.94594 -17.36183 -17.04319 -16.45240 -16.34657 -15.96399 -15.43032 -15.13799 -14.81401 -14.56966 -14.06546 -13.85887 -13.73440 -13.58065 -13.46981 -13.36462 -13.02011 -12.92332 -12.53915 -12.36882 -12.14167 -12.02852 -11.82925 -11.55656 -11.48743 -11.37076 -11.27678 -11.05122 -10.72217 -10.43034 -10.32158 -10.14695 -10.01441 -9.91604 -9.75087 -9.59534 -9.51124 -9.37453 -8.90718 -8.47717 -8.43336 -6.63415 -5.77090 -3.19455 0.77336 0.99228 2.60538 2.97007 3.38168 3.46456 3.48612 3.49525 3.71200 4.08958 4.42006 4.48041 4.51470 4.58587 4.64346 4.71003 4.83081 4.93607 5.06423 5.18531 5.26659 5.30565 5.37987 5.41261 5.47556 5.53463 5.59861 5.67435 5.71456 5.76245 5.79387 5.80847 5.88847 5.92842 5.99503 6.01653 6.13591 6.17664 6.31894 6.39211 6.51377 6.61917 6.67965 6.70647 6.86569 7.00066 7.36435 7.67391 7.71435 7.82135 7.91698 8.22232 8.47934 9.23749 9.87330 10.43891 11.31007 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.002680 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.045167 B =10443.529828 C =11118.179804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.172 3.828 11 C -0.123 4.123 12 C -0.079 4.079 13 C 0.115 3.885 14 N -0.634 5.634 15 C 0.552 3.448 16 O -0.544 6.544 17 C -0.055 4.055 18 H 0.113 0.887 19 C -0.105 4.105 20 C -0.079 4.079 21 C -0.140 4.140 22 C -0.067 4.067 23 C -0.170 4.170 24 C 0.102 3.898 25 N -0.467 5.467 26 C 0.126 3.874 27 C 0.120 3.880 28 C -0.105 4.105 29 C 0.147 3.853 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 -20.993 -13.392 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.007 4.007 14 N -0.367 5.367 15 C 0.340 3.660 16 O -0.422 6.422 17 C -0.077 4.077 18 H 0.131 0.869 19 C -0.143 4.143 20 C -0.117 4.117 21 C -0.142 4.142 22 C -0.093 4.093 23 C -0.190 4.190 24 C -0.056 4.056 25 N -0.175 5.175 26 C -0.012 4.012 27 C -0.003 4.003 28 C -0.144 4.144 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.383 -20.608 -12.636 24.177 hybrid contribution -0.251 0.216 -0.563 0.653 sum 0.132 -20.392 -13.199 24.291 Atomic orbital electron populations 1.70046 1.05251 1.25341 1.53991 1.25035 0.95248 0.98396 1.00999 0.86256 0.79419 0.84073 0.77234 1.20273 1.21594 1.21804 1.19227 0.92794 0.84951 1.41043 0.91722 1.44029 1.37105 1.01439 1.48738 1.20782 0.88712 0.98623 0.87316 1.22045 1.00096 0.94019 1.00097 1.21689 0.95970 0.94518 0.95866 1.23073 0.96940 0.80859 0.99867 1.49614 1.48526 1.03851 1.34733 1.19529 0.81668 0.80430 0.84358 1.90676 1.43849 1.74455 1.33248 1.20708 1.01528 0.96632 0.88872 0.86874 1.22283 0.98472 0.91658 1.01889 1.20995 1.00325 0.98219 0.92113 1.21517 0.98460 0.98516 0.95743 1.21067 0.97709 0.98775 0.91777 1.22111 1.00419 0.95691 1.00754 1.22682 0.93470 0.97050 0.92360 1.66864 1.21823 1.27241 1.01546 1.21319 0.95169 0.90604 0.94120 1.23090 0.98242 0.85807 0.93152 1.21694 0.95857 0.99213 0.97632 1.20880 0.97537 0.86907 0.92614 0.93726 0.89227 0.96444 0.91885 0.93006 0.90222 0.90370 0.89972 0.87916 0.90078 0.89383 0.84974 0.84497 0.82317 0.90609 0.90031 0.93086 0.91704 0.92707 0.96443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.21 55.49 0.62 -25.27 16 2 C 0.00 0.05 4.89 -17.43 -0.09 -0.04 16 3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.78 9.56 -15.06 -0.14 -6.92 16 8 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -14.48 2.96 -172.18 -0.51 -14.99 16 10 C 0.17 3.94 5.27 -3.64 -0.02 3.92 16 11 C -0.12 -2.20 5.31 -26.78 -0.14 -2.34 16 12 C -0.08 -1.29 0.83 -155.17 -0.13 -1.42 16 13 C 0.11 1.89 7.56 -8.22 -0.06 1.83 16 14 N -0.63 -9.77 3.42 -185.33 -0.63 -10.41 16 15 C 0.55 8.51 7.42 -10.98 -0.08 8.43 16 16 O -0.54 -9.92 16.23 5.56 0.09 -9.83 16 17 C -0.06 -0.66 3.14 -91.84 -0.29 -0.95 16 18 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.11 -1.00 6.39 -25.31 -0.16 -1.17 16 20 C -0.08 -0.71 6.76 -26.91 -0.18 -0.89 16 21 C -0.14 -1.45 6.16 -104.21 -0.64 -2.09 16 22 C -0.07 -0.57 10.17 -39.27 -0.40 -0.97 16 23 C -0.17 -1.34 10.12 -39.46 -0.40 -1.74 16 24 C 0.10 0.95 11.18 -17.61 -0.20 0.76 16 25 N -0.47 -5.53 8.86 -9.19 -0.08 -5.61 16 26 C 0.13 1.49 6.28 -82.03 -0.52 0.98 16 27 C 0.12 1.69 5.99 -8.37 -0.05 1.64 16 28 C -0.10 -1.81 5.25 -26.77 -0.14 -1.95 16 29 C 0.15 3.07 6.41 -3.65 -0.02 3.05 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.08 1.40 7.54 -51.93 -0.39 1.01 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.10 6.94 -51.93 -0.36 0.74 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 45 H 0.08 1.13 7.91 -51.93 -0.41 0.72 16 46 H 0.05 0.83 7.95 -51.93 -0.41 0.42 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 49 H 0.02 0.38 7.61 -51.93 -0.40 -0.02 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -32.10 385.72 -11.12 -43.22 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.73 Total: 0.49 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.66 Total: 0.12 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.60 Total: -56.28 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.10 -11.12 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050637778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.280 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds