Wall clock time and date at job start Wed Apr 1 2020 00:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47216 * 300.00601 * 3 2 1 6 6 H 1.48499 * 109.46920 * 60.01032 * 3 2 1 7 7 C 1.38803 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99842 * 197.66078 * 7 2 1 9 9 N 1.36941 * 120.00291 * 17.65362 * 7 2 1 10 10 C 1.46893 * 120.45820 * 28.46325 * 9 7 2 11 11 C 1.53354 * 108.74402 * 124.34249 * 10 9 7 12 12 C 1.52554 * 109.12688 * 52.25705 * 11 10 9 13 13 C 1.52955 * 114.06371 * 75.53971 * 12 11 10 14 14 N 1.47161 * 87.85528 * 139.44201 * 13 12 11 15 15 C 1.34780 * 136.00219 * 153.33683 * 14 13 12 16 16 O 1.21273 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99746 * 179.97438 * 15 14 13 18 18 H 1.08998 * 110.26186 * 60.60484 * 17 15 14 19 19 C 1.54341 * 110.29226 * 182.75811 * 17 15 14 20 20 C 1.54367 * 102.39251 * 92.59877 * 19 17 15 21 21 C 1.51219 * 105.11608 * 26.28835 * 20 19 17 22 22 C 1.38742 * 130.68903 * 162.84413 * 21 20 19 23 23 C 1.38577 * 118.56378 * 180.02562 * 22 21 20 24 24 C 1.38236 * 118.98290 * 359.97438 * 23 22 21 25 25 N 1.31689 * 120.80255 * 0.02562 * 24 23 22 26 26 C 1.32298 * 122.03199 * 359.97438 * 25 24 23 27 27 C 1.47168 * 87.99654 * 333.59371 * 14 13 12 28 28 C 1.52554 * 113.43055 * 302.66598 * 12 11 10 29 29 C 1.46883 * 120.46652 * 208.43411 * 9 7 2 30 30 H 0.97005 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.59704 * 4.55823 * 10 9 7 32 32 H 1.09007 * 109.58988 * 244.11862 * 10 9 7 33 33 H 1.09000 * 109.52491 * 292.36179 * 11 10 9 34 34 H 1.08996 * 109.52854 * 172.15256 * 11 10 9 35 35 H 1.09001 * 113.48976 * 24.69952 * 13 12 11 36 36 H 1.09001 * 113.54948 * 254.19457 * 13 12 11 37 37 H 1.09003 * 110.82189 * 210.82788 * 19 17 15 38 38 H 1.08997 * 110.82256 * 334.17185 * 19 17 15 39 39 H 1.08999 * 110.31204 * 145.19350 * 20 19 17 40 40 H 1.08995 * 110.31134 * 267.38022 * 20 19 17 41 41 H 1.08003 * 120.71898 * 0.03974 * 22 21 20 42 42 H 1.07995 * 120.51098 * 180.02562 * 23 22 21 43 43 H 1.07993 * 119.59552 * 180.27202 * 24 23 22 44 44 H 1.09002 * 113.48960 * 141.16097 * 27 14 13 45 45 H 1.09003 * 113.49014 * 271.66087 * 27 14 13 46 46 H 1.09001 * 109.52800 * 177.21698 * 28 12 11 47 47 H 1.08990 * 109.53275 * 297.42563 * 28 12 11 48 48 H 1.09000 * 109.58820 * 355.43009 * 29 9 7 49 49 H 1.08999 * 109.59330 * 115.72033 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0521 -1.2242 0.2832 9 7 1.3740 -2.3600 -0.3607 10 6 0.2451 -2.3281 -1.3001 11 6 0.5552 -3.2637 -2.4750 12 6 0.9432 -4.6357 -1.9325 13 6 -0.2388 -5.4620 -1.4231 14 7 0.3880 -6.6397 -2.0442 15 6 0.3753 -7.9705 -1.8311 16 8 -0.2852 -8.4332 -0.9253 17 6 1.1808 -8.8835 -2.7191 18 1 2.2400 -8.6343 -2.6550 19 6 0.9504 -10.3569 -2.3215 20 6 -0.2102 -10.7731 -3.2503 21 6 -0.0967 -9.8652 -4.4543 22 6 -0.6469 -9.9729 -5.7234 23 6 -0.3737 -8.9797 -6.6505 24 6 0.4337 -7.9208 -6.2794 25 7 0.9391 -7.8512 -5.0653 26 6 0.7018 -8.7788 -4.1523 27 6 1.0401 -5.7262 -2.9962 28 6 2.1324 -4.5964 -0.9777 29 6 1.8111 -3.6511 0.1864 30 1 -0.4850 0.8401 0.0004 31 1 0.1051 -1.3121 -1.6690 32 1 -0.6605 -2.6638 -0.7947 33 1 1.3809 -2.8554 -3.0577 34 1 -0.3270 -3.3583 -3.1080 35 1 -1.1901 -5.1857 -1.8779 36 1 -0.2926 -5.5212 -0.3360 37 1 1.8395 -10.9554 -2.5202 38 1 0.6594 -10.4346 -1.2740 39 1 -0.0997 -11.8151 -3.5504 40 1 -1.1672 -10.6216 -2.7511 41 1 -1.2748 -10.8124 -5.9832 42 1 -0.7859 -9.0317 -7.6473 43 1 0.6495 -7.1391 -6.9926 44 1 2.0657 -6.0076 -3.2353 45 1 0.4403 -5.5224 -3.8832 46 1 2.3231 -5.5978 -0.5919 47 1 3.0135 -4.2352 -1.5078 48 1 2.7027 -3.5065 0.7965 49 1 1.0155 -4.0774 0.7974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050637778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:31 Heat of formation + Delta-G solvation = 45.311945 kcal Electronic energy + Delta-G solvation = -30411.609521 eV Core-core repulsion = 26532.495144 eV Total energy + Delta-G solvation = -3879.114377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.36412 -41.46693 -39.68126 -37.63678 -36.78081 -34.31522 -33.66070 -32.28749 -31.45894 -30.35168 -29.76837 -28.18763 -27.07890 -25.92698 -24.44781 -24.00283 -23.32046 -22.55650 -22.13273 -20.17759 -19.49329 -18.54539 -18.15457 -17.79844 -17.17267 -17.09761 -16.78482 -16.48752 -15.98551 -15.67398 -15.44269 -15.35715 -14.99905 -14.90017 -14.57002 -14.40114 -14.23684 -13.95402 -13.86061 -13.72120 -13.35195 -13.08327 -12.99834 -12.92512 -12.85080 -12.69523 -12.58087 -12.25760 -12.24226 -12.08118 -12.00329 -11.81217 -11.46678 -11.29421 -11.17542 -10.93112 -10.63206 -10.49401 -10.26376 -9.74180 -9.67863 -8.63892 -7.84708 -5.30356 0.08222 0.33778 1.46004 1.47803 1.50031 1.60439 1.80875 2.53537 2.78055 2.95969 3.23351 3.34535 3.35598 3.49637 3.70297 3.78356 3.83345 3.93583 4.02336 4.09438 4.13015 4.24238 4.28730 4.39088 4.45875 4.49354 4.57035 4.58626 4.62206 4.65372 4.71340 4.78390 4.82429 4.83878 4.91353 4.93647 5.02132 5.06729 5.12425 5.14082 5.18727 5.23769 5.31395 5.34822 5.36282 5.54525 5.67977 5.76997 5.80260 6.42651 6.71300 6.98985 7.03858 7.18255 7.89249 8.40786 9.21145 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.002680 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.045167 B =10443.529828 C =11118.179804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.607 5.607 10 C 0.178 3.822 11 C -0.107 4.107 12 C -0.078 4.078 13 C 0.110 3.890 14 N -0.635 5.635 15 C 0.546 3.454 16 O -0.580 6.580 17 C -0.052 4.052 18 H 0.121 0.879 19 C -0.102 4.102 20 C -0.076 4.076 21 C -0.151 4.151 22 C -0.072 4.072 23 C -0.161 4.161 24 C 0.088 3.912 25 N -0.490 5.490 26 C 0.099 3.901 27 C 0.142 3.858 28 C -0.090 4.090 29 C 0.145 3.855 30 H 0.249 0.751 31 H 0.057 0.943 32 H -0.006 1.006 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.181 0.819 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -22.673 -16.118 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.222 1.222 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.052 3.948 11 C -0.146 4.146 12 C -0.079 4.079 13 C -0.012 4.012 14 N -0.368 5.368 15 C 0.337 3.663 16 O -0.461 6.461 17 C -0.073 4.073 18 H 0.139 0.861 19 C -0.140 4.140 20 C -0.113 4.113 21 C -0.153 4.153 22 C -0.098 4.098 23 C -0.180 4.180 24 C -0.069 4.069 25 N -0.198 5.198 26 C -0.038 4.038 27 C 0.020 3.980 28 C -0.129 4.129 29 C 0.019 3.981 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.012 0.988 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.176 0.824 42 H 0.187 0.813 43 H 0.198 0.802 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 1.399 -22.315 -15.375 27.135 hybrid contribution -0.615 0.708 0.298 0.984 sum 0.783 -21.607 -15.077 26.359 Atomic orbital electron populations 1.70198 1.06655 1.25725 1.55453 1.25772 0.95985 1.01423 1.01349 0.85241 0.78685 0.80001 0.76712 1.19110 1.21502 1.22248 1.19536 0.93009 0.86113 1.40369 0.91711 1.44291 1.37250 1.02013 1.49516 1.20597 0.87650 0.97978 0.88545 1.21814 1.01168 0.93577 0.98067 1.21577 0.95434 0.94184 0.96714 1.23023 0.97459 0.82016 0.98731 1.49687 1.48407 1.03943 1.34769 1.20275 0.81383 0.80485 0.84188 1.90653 1.45482 1.75038 1.34898 1.20732 1.01077 0.96834 0.88691 0.86074 1.22314 0.99909 0.90690 1.01078 1.20986 0.99194 0.99626 0.91535 1.21731 0.98454 0.98324 0.96771 1.21462 0.97483 0.99738 0.91097 1.22494 0.99043 0.94525 1.01955 1.23174 0.93538 0.98219 0.92014 1.66811 1.22776 1.27748 1.02500 1.21298 0.96753 0.91756 0.93979 1.22915 0.99060 0.83818 0.92211 1.21501 0.96434 0.98656 0.96322 1.20972 0.96855 0.86238 0.94015 0.94153 0.92471 0.98772 0.91591 0.90790 0.89755 0.92576 0.87334 0.89514 0.87426 0.90960 0.82389 0.81335 0.80213 0.89275 0.89034 0.91812 0.91031 0.92873 0.97710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 11.21 21.65 0.24 -55.01 16 2 C -0.05 -2.79 4.89 84.86 0.42 -2.37 16 3 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.26 -14.28 9.56 84.03 0.80 -13.47 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -30.39 2.96 -698.65 -2.07 -32.46 16 10 C 0.18 8.39 5.27 86.42 0.46 8.85 16 11 C -0.11 -3.75 5.31 30.57 0.16 -3.59 16 12 C -0.08 -2.46 0.83 -52.61 -0.04 -2.51 16 13 C 0.11 3.65 7.56 83.31 0.63 4.28 16 14 N -0.64 -19.10 3.42 -858.65 -2.94 -22.04 16 15 C 0.55 16.67 7.42 87.66 0.65 17.32 16 16 O -0.58 -21.54 16.23 -3.01 -0.05 -21.59 16 17 C -0.05 -1.16 3.14 -11.58 -0.04 -1.20 16 18 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.10 -1.82 6.39 31.51 0.20 -1.62 16 20 C -0.08 -1.24 6.76 30.48 0.21 -1.03 16 21 C -0.15 -2.78 6.16 -19.60 -0.12 -2.90 16 22 C -0.07 -0.99 10.17 22.47 0.23 -0.77 16 23 C -0.16 -1.95 10.12 22.35 0.23 -1.73 16 24 C 0.09 1.39 11.18 84.71 0.95 2.33 16 25 N -0.49 -10.48 8.86 -182.98 -1.62 -12.11 16 26 C 0.10 2.17 6.28 42.72 0.27 2.44 16 27 C 0.14 3.73 5.99 83.21 0.50 4.23 16 28 C -0.09 -3.03 5.25 30.57 0.16 -2.87 16 29 C 0.14 6.14 6.41 86.43 0.55 6.69 16 30 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 31 H 0.06 3.07 5.97 -2.39 -0.01 3.05 16 32 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.08 2.69 8.06 -2.39 -0.02 2.67 16 36 H 0.06 2.09 7.54 -2.39 -0.02 2.07 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.84 6.94 -2.39 -0.02 1.82 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.09 2.17 8.10 -2.39 -0.02 2.15 16 45 H 0.09 2.29 7.91 -2.39 -0.02 2.27 16 46 H 0.06 2.00 7.95 -2.39 -0.02 1.98 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.05 2.22 7.92 -2.39 -0.02 2.20 16 49 H 0.00 0.22 7.61 -2.39 -0.02 0.20 16 Total: -1.00 -71.63 385.72 2.74 -68.88 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.94 Total: 15.42 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.21 Total: 12.09 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.38 Total: -121.61 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.63 2.74 -68.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050637778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.196 kcal (2) G-P(sol) polarization free energy of solvation -71.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds