Wall clock time and date at job start Wed Apr 1 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48496 * 109.46872 * 270.00143 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47110 * 149.99670 * 3 2 1 7 7 C 1.38808 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00408 * 162.50716 * 7 2 1 9 9 N 1.36942 * 119.99991 * 342.22560 * 7 2 1 10 10 C 1.46886 * 120.46639 * 331.57165 * 9 7 2 11 11 C 1.52854 * 109.01644 * 235.48501 * 10 9 7 12 12 C 1.52669 * 109.17751 * 307.81614 * 11 10 9 13 13 C 1.53484 * 113.62695 * 188.98920 * 12 11 10 14 14 N 1.47671 * 85.98979 * 137.70881 * 13 12 11 15 15 C 1.34772 * 134.46051 * 155.70199 * 14 13 12 16 16 O 1.21515 * 120.00291 * 179.97438 * 15 14 13 17 17 C 1.48174 * 119.99476 * 359.97438 * 15 14 13 18 18 C 1.39307 * 119.71712 * 179.72836 * 17 15 14 19 19 C 1.38597 * 119.05722 * 179.74975 * 18 17 15 20 20 C 1.38633 * 118.48539 * 0.51282 * 19 18 17 21 21 C 1.50697 * 120.32362 * 179.70892 * 20 19 18 22 22 C 1.52999 * 117.49625 * 188.64197 * 21 20 19 23 23 C 1.53002 * 117.50071 * 120.01818 * 21 20 19 24 24 C 1.38564 * 119.35058 * 359.72444 * 20 19 18 25 25 N 1.31523 * 120.90300 * 0.02708 * 24 20 19 26 26 C 1.47671 * 91.08601 * 335.68293 * 14 13 12 27 27 C 1.52678 * 113.18563 * 57.46055 * 12 11 10 28 28 C 1.46878 * 120.46612 * 151.83908 * 9 7 2 29 29 H 0.97006 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58454 * 355.30644 * 10 9 7 31 31 H 1.08997 * 109.59165 * 115.74074 * 10 9 7 32 32 H 1.09002 * 109.61191 * 187.83719 * 11 10 9 33 33 H 1.09006 * 109.44979 * 67.69241 * 11 10 9 34 34 H 1.08995 * 113.79321 * 251.97690 * 13 12 11 35 35 H 1.09006 * 113.78568 * 23.44413 * 13 12 11 36 36 H 1.07999 * 120.47714 * 359.97357 * 18 17 15 37 37 H 1.07992 * 120.76073 * 180.23823 * 19 18 17 38 38 H 1.09003 * 115.54719 * 334.34810 * 21 20 19 39 39 H 1.09000 * 117.50083 * 0.02562 * 22 21 20 40 40 H 1.08999 * 117.49794 * 145.01913 * 22 21 20 41 41 H 1.08992 * 117.49932 * 214.97637 * 23 21 20 42 42 H 1.08995 * 117.49577 * 359.97438 * 23 21 20 43 43 H 1.07999 * 119.54360 * 180.02562 * 24 20 19 44 44 H 1.09000 * 113.79635 * 270.05104 * 26 14 13 45 45 H 1.09001 * 113.79504 * 138.57588 * 26 14 13 46 46 H 1.08994 * 109.53131 * 182.52489 * 27 12 11 47 47 H 1.08993 * 109.58843 * 62.33420 * 27 12 11 48 48 H 1.09003 * 109.58990 * 244.26002 * 28 9 7 49 49 H 1.09003 * 109.58843 * 4.69859 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2239 -0.2806 9 7 1.3745 -2.3596 0.3631 10 6 0.2470 -2.3268 1.3039 11 6 0.5494 -3.2594 2.4766 12 6 0.9354 -4.6345 1.9372 13 6 1.0489 -5.7120 3.0243 14 7 0.3481 -6.5981 2.0733 15 6 0.2840 -7.9329 1.8986 16 8 -0.3958 -8.3967 1.0045 17 6 1.0426 -8.8349 2.7967 18 6 0.9676 -10.2139 2.6143 19 6 1.6869 -11.0447 3.4590 20 6 2.4479 -10.4673 4.4638 21 6 3.2409 -11.3318 5.4096 22 6 3.8929 -10.6482 6.6132 23 6 4.7573 -11.1315 5.4469 24 6 2.4718 -9.0877 4.5900 25 7 1.7834 -8.3224 3.7713 26 6 -0.2547 -5.4356 1.3908 27 6 2.1312 -4.5942 0.9888 28 6 1.8144 -3.6520 -0.1788 29 1 -0.4850 0.8401 0.0004 30 1 0.1088 -1.3107 1.6734 31 1 -0.6597 -2.6609 0.7995 32 1 -0.3339 -3.3507 3.1087 33 1 1.3749 -2.8522 3.0605 34 1 2.0737 -6.0169 3.2359 35 1 0.4747 -5.4909 3.9241 36 1 0.3606 -10.6298 1.8238 37 1 1.6519 -12.1174 3.3400 38 1 2.8635 -12.3448 5.5492 39 1 3.7478 -9.5733 6.7211 40 1 3.9444 -11.2114 7.5450 41 1 5.3774 -12.0126 5.6114 42 1 5.1813 -10.3748 4.7870 43 1 3.0639 -8.6346 5.3714 44 1 -1.2162 -5.1323 1.8052 45 1 -0.2658 -5.5207 0.3042 46 1 2.3266 -5.5958 0.6060 47 1 3.0090 -4.2304 1.5227 48 1 1.0205 -4.0814 -0.7898 49 1 2.7085 -3.5086 -0.7855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050743642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:29 Heat of formation + Delta-G solvation = 88.496248 kcal Electronic energy + Delta-G solvation = -29476.721313 eV Core-core repulsion = 25599.479549 eV Total energy + Delta-G solvation = -3877.241765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.05840 -40.21993 -38.31380 -37.30434 -35.80892 -32.97918 -32.34654 -31.36826 -30.51002 -29.68627 -27.28727 -26.25763 -24.88323 -24.25668 -23.91072 -22.77349 -22.30892 -21.34745 -20.79734 -19.79345 -17.96055 -17.50755 -17.39995 -16.43468 -16.15348 -15.71910 -15.56267 -15.14637 -15.03023 -14.78891 -14.43255 -13.94474 -13.84815 -13.58304 -13.42670 -13.31133 -13.14079 -12.88905 -12.54816 -12.21104 -12.18586 -11.96446 -11.78894 -11.61283 -11.44342 -11.36837 -11.04522 -10.91900 -10.69120 -10.45990 -10.37437 -10.19306 -10.08338 -10.02204 -9.85461 -9.67061 -9.56602 -9.21642 -9.16402 -8.46441 -8.42111 -6.62707 -5.76733 -3.18802 0.37722 0.93412 2.62516 2.89850 3.34436 3.38780 3.46049 3.48346 3.73420 3.82493 4.08776 4.31568 4.39562 4.44628 4.51784 4.53331 4.60089 4.73667 4.92676 4.99896 5.14558 5.18828 5.29316 5.34901 5.41505 5.44265 5.47370 5.59846 5.61257 5.62279 5.69516 5.73884 5.81328 5.85085 5.98409 6.03528 6.13620 6.17869 6.31076 6.32768 6.52409 6.62080 6.68342 6.72299 6.87091 7.00279 7.36851 7.48796 7.67756 7.82133 7.83384 8.21121 8.48408 9.24206 9.87916 10.44432 11.31492 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019650 B = 0.002340 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.593979 B =11962.253762 C =12782.108641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.126 4.126 12 C -0.079 4.079 13 C 0.121 3.879 14 N -0.617 5.617 15 C 0.584 3.416 16 O -0.544 6.544 17 C 0.083 3.917 18 C -0.109 4.109 19 C -0.078 4.078 20 C -0.086 4.086 21 C -0.120 4.120 22 C -0.174 4.174 23 C -0.166 4.166 24 C 0.094 3.906 25 N -0.445 5.445 26 C 0.118 3.882 27 C -0.106 4.106 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.160 0.840 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.018 0.982 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -22.596 13.587 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.165 4.165 12 C -0.080 4.080 13 C -0.002 4.002 14 N -0.350 5.350 15 C 0.372 3.628 16 O -0.422 6.422 17 C -0.055 4.055 18 C -0.130 4.130 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.139 4.139 22 C -0.210 4.210 23 C -0.203 4.203 24 C -0.065 4.065 25 N -0.155 5.155 26 C -0.004 4.004 27 C -0.145 4.145 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.177 0.823 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.036 0.964 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.179 -21.956 13.118 26.095 hybrid contribution 0.318 -0.211 0.025 0.382 sum 5.497 -22.166 13.143 26.350 Atomic orbital electron populations 1.70036 1.05243 1.25451 1.53859 1.25025 0.95242 0.98368 1.01004 0.86340 0.79199 0.83802 0.77691 1.21462 1.21598 1.20528 1.19159 0.92731 0.85000 1.41186 0.91841 1.43999 1.37182 1.01343 1.48757 1.20680 0.88792 0.98682 0.87374 1.22043 1.00187 0.94148 1.00164 1.22048 0.95771 0.94698 0.95516 1.23425 0.98161 0.85500 0.93079 1.49901 1.47781 1.03141 1.34141 1.17511 0.80965 0.80747 0.83549 1.90775 1.42537 1.75220 1.33649 1.21202 0.97153 0.92178 0.94930 1.22127 0.98317 0.93035 0.99515 1.21395 0.94868 1.00701 0.93449 1.20355 0.97402 0.94926 0.96148 1.20976 0.94481 0.99566 0.98891 1.23099 1.03522 1.01434 0.92983 1.23070 0.91671 1.03827 1.01714 1.22725 0.96759 0.89764 0.97289 1.67753 1.05030 1.40031 1.02695 1.23368 0.97301 0.80454 0.99232 1.21739 0.95878 0.99186 0.97733 1.20890 0.97531 0.86900 0.92653 0.93673 0.89277 0.96424 0.92854 0.91951 0.89285 0.90140 0.83362 0.84130 0.86499 0.88050 0.88033 0.88102 0.88303 0.82291 0.89672 0.89857 0.93141 0.91753 0.96407 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.22 55.49 0.62 -25.23 16 2 C 0.00 0.06 4.89 -17.43 -0.09 -0.03 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.79 9.56 -15.06 -0.14 -6.94 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.45 2.97 -172.51 -0.51 -14.96 16 10 C 0.17 3.89 5.21 -3.91 -0.02 3.87 16 11 C -0.13 -2.23 5.24 -26.98 -0.14 -2.37 16 12 C -0.08 -1.29 0.77 -154.42 -0.12 -1.41 16 13 C 0.12 1.70 6.73 -3.16 -0.02 1.68 16 14 N -0.62 -9.78 3.44 -181.18 -0.62 -10.41 16 15 C 0.58 9.67 8.04 -12.18 -0.10 9.58 16 16 O -0.54 -10.41 17.05 5.35 0.09 -10.32 16 17 C 0.08 1.15 6.75 -83.01 -0.56 0.58 16 18 C -0.11 -1.23 9.63 -39.05 -0.38 -1.60 16 19 C -0.08 -0.67 9.88 -39.30 -0.39 -1.06 16 20 C -0.09 -0.71 5.63 -104.36 -0.59 -1.30 16 21 C -0.12 -0.70 6.06 -91.77 -0.56 -1.25 16 22 C -0.17 -0.84 9.87 -26.73 -0.26 -1.11 16 23 C -0.17 -0.85 10.17 -26.73 -0.27 -1.12 16 24 C 0.09 0.91 10.47 -17.56 -0.18 0.72 16 25 N -0.44 -5.55 7.90 -9.80 -0.08 -5.62 16 26 C 0.12 1.93 7.62 -3.14 -0.02 1.91 16 27 C -0.11 -1.85 5.22 -26.72 -0.14 -1.99 16 28 C 0.15 3.07 6.38 -3.66 -0.02 3.04 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.09 2.30 5.98 -51.93 -0.31 1.99 16 31 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 32 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.23 7.15 -51.93 -0.37 0.86 16 35 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.15 1.60 7.64 -52.49 -0.40 1.20 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.48 6.20 -51.93 -0.32 0.16 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.16 1.16 6.03 -52.49 -0.32 0.85 16 44 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 45 H 0.08 1.47 7.41 -51.93 -0.38 1.09 16 46 H 0.05 0.85 8.01 -51.93 -0.42 0.43 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 49 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -31.85 390.91 -11.15 -43.00 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.51 Total: -0.03 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -4.00 Total: 1.23 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.59 Total: -56.22 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.85 -11.15 -43.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050743642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.498 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds